Sabirov, Denis Sh.; Zimina, Alexandra D.; Tukhbatullina, Alina A. Hess’ law requires modified mathematical rules for information entropy of interdependent chemical reactions. (English) Zbl 07812591 J. Math. Chem. 62, No. 4, 819-835 (2024). MSC: 92E20 94A17 PDFBibTeX XMLCite \textit{D. Sh. Sabirov} et al., J. Math. Chem. 62, No. 4, 819--835 (2024; Zbl 07812591) Full Text: DOI
Meana-Pañeda, Rubén; Zheng, Jingjing; Bao, Junwei Lucas; Zhang, Shuxia; Lynch, Benjamin J.; Corchado, José C.; Chuang, Yao-Yuan; Fast, Patton L.; Hu, Wei-Ping; Liu, Yi-Ping; Lynch, Gillian C.; Nguyen, Kiet A.; Jackels, Charles F.; Fernández-Ramos, Antonio; Ellingson, Benjamin A.; Melissas, Vasilios S.; Villà, Jordi; Rossi, Ivan; Coitiño, Elena L.; Pu, Jingzhi; Albu, Titus V.; Zhang, Rui Ming; Xu, Xuefei; Ratkiewicz, Artur; Steckler, Rozeanne; Garrett, Bruce C.; Isaacson, Alan D.; Truhlar, Donald G. Polyrate 2023: a computer program for the calculation of chemical reaction rates for polyatomics. New version announcement. (English) Zbl 07763775 Comput. Phys. Commun. 294, Article ID 108933, 5 p. (2024). MSC: 81U26 80A30 92E20 60J35 80A30 14J20 81V45 81V55 80A23 81Q20 81-10 PDFBibTeX XMLCite \textit{R. Meana-Pañeda} et al., Comput. Phys. Commun. 294, Article ID 108933, 5 p. (2024; Zbl 07763775) Full Text: DOI
Müller, Stefan A new decomposition of the graph Laplacian and the binomial structure of mass-action systems. (English) Zbl 1519.05158 J. Nonlinear Sci. 33, No. 5, Paper No. 91, 29 p. (2023). MSC: 05C50 05C20 05C78 05C92 92E10 92E20 34D20 92C45 PDFBibTeX XMLCite \textit{S. Müller}, J. Nonlinear Sci. 33, No. 5, Paper No. 91, 29 p. (2023; Zbl 1519.05158) Full Text: DOI arXiv
Flores-Gallegos, N. On the information obtained using Shannon’s entropy through spin density. (English) Zbl 1519.92364 J. Math. Chem. 61, No. 7, 1532-1544 (2023). MSC: 92E20 81V55 94A17 PDFBibTeX XMLCite \textit{N. Flores-Gallegos}, J. Math. Chem. 61, No. 7, 1532--1544 (2023; Zbl 1519.92364) Full Text: DOI
Laffitte, Marcos E. González; Beier, Nora; Domschke, Nico; Stadler, Peter F. Comparison of atom maps. (English) Zbl 1519.92354 MATCH Commun. Math. Comput. Chem. 90, No. 1, 75-102 (2023). MSC: 92E10 05C92 92E20 PDFBibTeX XMLCite \textit{M. E. G. Laffitte} et al., MATCH Commun. Math. Comput. Chem. 90, No. 1, 75--102 (2023; Zbl 1519.92354) Full Text: DOI
Sun, Y. Z.; Wang, S. T. CNOK: a C++ Glauber model code for single-nucleon knockout reactions. (English) Zbl 1525.81039 Comput. Phys. Commun. 288, Article ID 108726, 16 p. (2023). MSC: 81U90 81V35 62F40 47A10 14G12 81U30 78A45 81V55 81-08 PDFBibTeX XMLCite \textit{Y. Z. Sun} and \textit{S. T. Wang}, Comput. Phys. Commun. 288, Article ID 108726, 16 p. (2023; Zbl 1525.81039) Full Text: DOI
Eilertsen, Justin; Schnell, Santiago; Walcher, Sebastian Natural parameter conditions for singular perturbations of chemical and biochemical reaction networks. (English) Zbl 1519.92362 Bull. Math. Biol. 85, No. 6, Paper No. 48, 75 p. (2023). Reviewer: Kai Wang (Bengbu) MSC: 92E20 92C40 92C42 92C45 34D15 PDFBibTeX XMLCite \textit{J. Eilertsen} et al., Bull. Math. Biol. 85, No. 6, Paper No. 48, 75 p. (2023; Zbl 1519.92362) Full Text: DOI arXiv
Hirono, Yuji; Hanai, Ryo Squeezing stationary distributions of stochastic chemical reaction systems. (English) Zbl 1509.92023 J. Stat. Phys. 190, No. 4, Paper No. 86, 24 p. (2023). MSC: 92E20 60J28 81V55 PDFBibTeX XMLCite \textit{Y. Hirono} and \textit{R. Hanai}, J. Stat. Phys. 190, No. 4, Paper No. 86, 24 p. (2023; Zbl 1509.92023) Full Text: DOI arXiv
Liu, Yunmei; Tian, Zejie; Li, Hui; Liu, Zhenhua; Shi, Lei; Yang, Lingyan 3D quantitative structure-activity relationships study on anti-gastric cancer of chrysin derivatives. (English) Zbl 1511.92025 J. Math. Chem. 61, No. 5, 1205-1216 (2023). MSC: 92C40 92E20 PDFBibTeX XMLCite \textit{Y. Liu} et al., J. Math. Chem. 61, No. 5, 1205--1216 (2023; Zbl 1511.92025) Full Text: DOI
Fortun, Noel T.; Mendoza, Eduardo R. Comparative analysis of carbon cycle models via kinetic representations. (English) Zbl 1516.92136 J. Math. Chem. 61, No. 5, 896-932 (2023). Reviewer: Dieter Erle (Dortmund) MSC: 92E20 92C40 92C42 92C45 34C60 PDFBibTeX XMLCite \textit{N. T. Fortun} and \textit{E. R. Mendoza}, J. Math. Chem. 61, No. 5, 896--932 (2023; Zbl 1516.92136) Full Text: DOI arXiv
Hernandez, Bryan S.; Mendoza, Eduardo R. Positive equilibria of power law kinetics on networks with independent linkage classes. (English) Zbl 1519.92365 J. Math. Chem. 61, No. 3, 630-651 (2023). Reviewer: Dieter Erle (Dortmund) MSC: 92E20 92C42 05C92 92C40 92C45 PDFBibTeX XMLCite \textit{B. S. Hernandez} and \textit{E. R. Mendoza}, J. Math. Chem. 61, No. 3, 630--651 (2023; Zbl 1519.92365) Full Text: DOI arXiv
Komatsu, Hirokazu; Yokota, Hiroshi Stability analysis for Butlerov chemical reaction in batch reactor. (English) Zbl 1515.37106 J. Math. Chem. 61, No. 4, 689-711 (2023). MSC: 37N25 92E20 92C40 80A30 80A32 PDFBibTeX XMLCite \textit{H. Komatsu} and \textit{H. Yokota}, J. Math. Chem. 61, No. 4, 689--711 (2023; Zbl 1515.37106) Full Text: DOI
Bertini, Marco; Ferrante, Francesco; Duca, Dario Empathes: a general code for nudged elastic band transition states search. (English) Zbl 1528.81002 Comput. Phys. Commun. 271, Article ID 108224, 10 p. (2022). MSC: 81-04 81V55 PDFBibTeX XMLCite \textit{M. Bertini} et al., Comput. Phys. Commun. 271, Article ID 108224, 10 p. (2022; Zbl 1528.81002) Full Text: DOI
Bermudo, Sergio; Higuita, Robinson A.; Rada, Juan \(k\)-domination and total \(k\)-domination numbers in catacondensed hexagonal systems. (English) Zbl 1512.92148 Math. Biosci. Eng. 19, No. 7, 7138-7155 (2022). Reviewer: Dieter Erle (Dortmund) MSC: 92E10 05C92 92C42 92E20 92C40 PDFBibTeX XMLCite \textit{S. Bermudo} et al., Math. Biosci. Eng. 19, No. 7, 7138--7155 (2022; Zbl 1512.92148) Full Text: DOI
Braichenko, Svitlana; Grima, Ramon; Sanguinetti, Guido Bayesian learning of effective chemical master equations in crowded intracellular conditions. (English) Zbl 1505.92071 Petre, Ion (ed.) et al., Computational methods in systems biology. 20th international conference, CMSB 2022, Bucharest, Romania, September 14–16, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13447, 239-258 (2022). MSC: 92C42 92C40 92C37 92-08 PDFBibTeX XMLCite \textit{S. Braichenko} et al., Lect. Notes Comput. Sci. 13447, 239--258 (2022; Zbl 1505.92071) Full Text: DOI arXiv
Marsh, Lewis; Dufresne, Emilie; Byrne, Helen M.; Harrington, Heather A. Algebra, geometry and topology of ERK kinetics. (English) Zbl 1506.92042 Bull. Math. Biol. 84, No. 12, Paper No. 137, 50 p. (2022). Reviewer: Dieter Erle (Dortmund) MSC: 92C45 92C42 92C37 55N31 92C40 92E20 62G07 37N25 62R40 PDFBibTeX XMLCite \textit{L. Marsh} et al., Bull. Math. Biol. 84, No. 12, Paper No. 137, 50 p. (2022; Zbl 1506.92042) Full Text: DOI arXiv
Narasimhan, D.; Vignesh, R.; Desikan, Kalyani Results on Revan and hyper Revan indices of some HEX derived networks. (English) Zbl 1512.92151 Kannan, S. R. (ed.) et al., Fuzzy mathematical analysis and advances in computational mathematics, FMAACM 2020, Pondicherry, India, February 25–26, 2021 (initially scheduled in 2020). Singapore: Springer. Stud. Fuzziness Soft Comput. 419, 209-220 (2022). MSC: 92E10 92E20 92C42 05C92 05C09 PDFBibTeX XMLCite \textit{D. Narasimhan} et al., Stud. Fuzziness Soft Comput. 419, 209--220 (2022; Zbl 1512.92151) Full Text: DOI
Blanchini, Franco; Colaneri, Patrizio; Giordano, Giulia; Zorzan, Irene Vertex results for the robust analysis of uncertain biochemical systems. (English) Zbl 1498.92079 J. Math. Biol. 85, No. 4, Paper No. 35, 43 p. (2022). MSC: 92C40 92C42 92E20 93B35 93D09 PDFBibTeX XMLCite \textit{F. Blanchini} et al., J. Math. Biol. 85, No. 4, Paper No. 35, 43 p. (2022; Zbl 1498.92079) Full Text: DOI
Unterberger, Jérémie; Nghe, Philippe Stoichiometric and dynamical autocatalysis for diluted chemical reaction networks. (English) Zbl 1497.92102 J. Math. Biol. 85, No. 3, Paper No. 26, 46 p. (2022). MSC: 92C42 92C40 92E20 60J28 PDFBibTeX XMLCite \textit{J. Unterberger} and \textit{P. Nghe}, J. Math. Biol. 85, No. 3, Paper No. 26, 46 p. (2022; Zbl 1497.92102) Full Text: DOI arXiv
Franchi, B.; Garcia, M. A. Herrero; Tora, V. Dynamics of a polymerization model on a graph. (English) Zbl 1498.92349 Matematiche 77, No. 1, 173-201 (2022). MSC: 92E20 92C40 05C92 35Q92 92C32 PDFBibTeX XMLCite \textit{B. Franchi} et al., Matematiche 77, No. 1, 173--201 (2022; Zbl 1498.92349) Full Text: DOI
Wentz, Jacqueline; Cameron, Jeffrey C.; Bortz, David M. Analytical singular value decomposition for a class of stoichiometry matrices. (English) Zbl 1494.15010 SIAM J. Matrix Anal. Appl. 43, No. 3, 1109-1147 (2022). MSC: 15A18 47A80 35Q92 92C40 92E20 80A30 80A32 PDFBibTeX XMLCite \textit{J. Wentz} et al., SIAM J. Matrix Anal. Appl. 43, No. 3, 1109--1147 (2022; Zbl 1494.15010) Full Text: DOI arXiv
Feliu, Elisenda; Kaihnsa, Nidhi; de Wolff, Timo; Yürük, Oğuzhan The kinetic space of multistationarity in dual phosphorylation. (English) Zbl 1496.92028 J. Dyn. Differ. Equations 34, No. 2, 825-852 (2022). Reviewer: Dieter Erle (Dortmund) MSC: 92C45 92C42 92C40 92C37 14P10 37N25 92E20 14M25 34A34 34C05 PDFBibTeX XMLCite \textit{E. Feliu} et al., J. Dyn. Differ. Equations 34, No. 2, 825--852 (2022; Zbl 1496.92028) Full Text: DOI arXiv
Flores-Gallegos, N. Rényi’s divergence as a chemical similarity criterion. (English) Zbl 1481.92189 J. Math. Chem. 60, No. 1, 239-254 (2022). MSC: 92E10 92E20 PDFBibTeX XMLCite \textit{N. Flores-Gallegos}, J. Math. Chem. 60, No. 1, 239--254 (2022; Zbl 1481.92189) Full Text: DOI
Zenteno-Catemaxca, Rolando; Moguel-Castañeda, Jazael G.; Rivera, Victor M.; Puebla, Hector; Hernandez-Martinez, Eliseo Monitoring a chemical reaction using pH measurements: an approach based on multiscale fractal analysis. (English) Zbl 1498.92353 Chaos Solitons Fractals 152, Article ID 111336, 9 p. (2021). MSC: 92E20 92C40 28A80 PDFBibTeX XMLCite \textit{R. Zenteno-Catemaxca} et al., Chaos Solitons Fractals 152, Article ID 111336, 9 p. (2021; Zbl 1498.92353) Full Text: DOI
Genovese, Fabrizio; Loregian, Fosco; Palombi, Daniele Nets with mana: a framework for chemical reaction modelling. (English) Zbl 1492.68095 Gadducci, Fabio (ed.) et al., Graph transformation. 14th international conference, ICGT 2021, held as part of STAF 2021, virtual event, June 24–25, 2021. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12741, 185-202 (2021). MSC: 68Q85 18C15 18M05 92C40 92E20 PDFBibTeX XMLCite \textit{F. Genovese} et al., Lect. Notes Comput. Sci. 12741, 185--202 (2021; Zbl 1492.68095) Full Text: DOI arXiv
Mizuno, Yuta; Takigawa, Mikoto; Miyashita, Saki; Nagahata, Yutaka; Teramoto, Hiroshi; Komatsuzaki, Tamiki An algorithm for computing phase space structures in chemical reaction dynamics using Voronoi tessellation. (English) Zbl 1490.92132 Physica D 428, Article ID 133047, 17 p. (2021). Reviewer: Dieter Erle (Dortmund) MSC: 92E20 65L50 34C45 37J99 37N25 81V55 PDFBibTeX XMLCite \textit{Y. Mizuno} et al., Physica D 428, Article ID 133047, 17 p. (2021; Zbl 1490.92132) Full Text: DOI
Craciun, Gheorghe; Jin, Jiaxin; Yu, Polly Y. Uniqueness of weakly reversible and deficiency zero realizations of dynamical systems. (English) Zbl 1483.92073 Math. Biosci. 342, Article ID 108720, 7 p. (2021). Reviewer: Dieter Erle (Dortmund) MSC: 92C45 92C42 92E20 37N25 34C60 92C40 34C41 34D20 93D05 PDFBibTeX XMLCite \textit{G. Craciun} et al., Math. Biosci. 342, Article ID 108720, 7 p. (2021; Zbl 1483.92073) Full Text: DOI arXiv
Tan, Zhixin Cyrillus; Meyer, Aaron S. A general model of multivalent binding with ligands of heterotypic subunits and multiple surface receptors. (English) Zbl 1480.92083 Math. Biosci. 342, Article ID 108714, 9 p. (2021). MSC: 92C40 PDFBibTeX XMLCite \textit{Z. C. Tan} and \textit{A. S. Meyer}, Math. Biosci. 342, Article ID 108714, 9 p. (2021; Zbl 1480.92083) Full Text: DOI
Pandey, Priyanka; Naik, Shibabrat; Keshavamurthy, Srihari Classical and quantum dynamical manifestations of index-\(2\) saddles: concerted versus sequential reaction mechanisms. (English) Zbl 1484.37062 Regul. Chaotic Dyn. 26, No. 2, 165-182 (2021). MSC: 37J25 37M21 37M05 81V55 PDFBibTeX XMLCite \textit{P. Pandey} et al., Regul. Chaotic Dyn. 26, No. 2, 165--182 (2021; Zbl 1484.37062) Full Text: DOI arXiv
Moschini, Laura; Diaz-Torres, Alexis Tracing the dynamical interplay of low-energy reaction processes of exotic nuclei using a two-center molecular continuum. (English) Zbl 07414512 Phys. Lett., B 820, Article ID 136513, 4 p. (2021). MSC: 81-XX 83-XX PDFBibTeX XMLCite \textit{L. Moschini} and \textit{A. Diaz-Torres}, Phys. Lett., B 820, Article ID 136513, 4 p. (2021; Zbl 07414512) Full Text: DOI arXiv
Puchhammer, Florian; Ben Abdellah, Amal; L’Ecuyer, Pierre Variance reduction with array-RQMC for tau-leaping simulation of stochastic biological and chemical reaction networks. (English) Zbl 1470.92125 Bull. Math. Biol. 83, No. 8, Paper No. 91, 31 p. (2021). MSC: 92C42 92C40 92E20 60J22 65C05 PDFBibTeX XMLCite \textit{F. Puchhammer} et al., Bull. Math. Biol. 83, No. 8, Paper No. 91, 31 p. (2021; Zbl 1470.92125) Full Text: DOI arXiv Link
Hernandez, Bryan S.; De la Cruz, Ralph John L. Independent decompositions of chemical reaction networks. (English) Zbl 1467.92256 Bull. Math. Biol. 83, No. 7, Paper No. 76, 23 p. (2021). MSC: 92E20 92C40 92C42 92D30 PDFBibTeX XMLCite \textit{B. S. Hernandez} and \textit{R. J. L. De la Cruz}, Bull. Math. Biol. 83, No. 7, Paper No. 76, 23 p. (2021; Zbl 1467.92256) Full Text: DOI arXiv
Cappelletti, Daniele; Pal Majumder, Abhishek; Wiuf, Carsten The dynamics of stochastic mono-molecular reaction systems in stochastic environments. (English) Zbl 1469.60354 Stochastic Processes Appl. 137, 106-148 (2021). MSC: 60K37 60J27 92E20 PDFBibTeX XMLCite \textit{D. Cappelletti} et al., Stochastic Processes Appl. 137, 106--148 (2021; Zbl 1469.60354) Full Text: DOI
Paşca, Daniel; Stoica, Cristina; Valls, Cláudia Anisotropic two-body problem under the Buckingham potential. (English) Zbl 1498.70004 J. Math. Chem. 59, No. 5, 1368-1377 (2021). Reviewer: Maria Gousidou-Koutita (Thessaloniki) MSC: 70-08 70F05 70K05 70G60 70H05 92E10 92E20 PDFBibTeX XMLCite \textit{D. Paşca} et al., J. Math. Chem. 59, No. 5, 1368--1377 (2021; Zbl 1498.70004) Full Text: DOI
Oarga, Alexandru; Bannerman, Bridget; Júlvez, Jorge Growth dependent computation of chokepoints in metabolic networks. (English) Zbl 1506.92036 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 102-119 (2020). MSC: 92C42 92C40 92-08 PDFBibTeX XMLCite \textit{A. Oarga} et al., Lect. Notes Comput. Sci. 12314, 102--119 (2020; Zbl 1506.92036) Full Text: DOI
Boros, Balázs; Müller, Stefan; Regensburger, Georg Complex-balanced equilibria of generalized mass-action systems: necessary conditions for linear stability. (English) Zbl 1478.92264 Math. Biosci. Eng. 17, No. 1, 442-459 (2020). Reviewer: Dieter Erle (Dortmund) MSC: 92E20 34C60 92E10 92C45 37C75 34D20 PDFBibTeX XMLCite \textit{B. Boros} et al., Math. Biosci. Eng. 17, No. 1, 442--459 (2020; Zbl 1478.92264) Full Text: DOI arXiv
Zhou, Jun Qualitative analysis of the Oregonator model. (English) Zbl 1467.35201 Ann. Pol. Math. 125, No. 3, 285-305 (2020). MSC: 35K51 35B32 35B35 35K57 35J57 35J61 92C40 92C45 92E20 PDFBibTeX XMLCite \textit{J. Zhou}, Ann. Pol. Math. 125, No. 3, 285--305 (2020; Zbl 1467.35201) Full Text: DOI
Winkelmann, Stefanie; Schütte, Christof Stochastic dynamics in computational biology. (English) Zbl 1467.92005 Frontiers in Applied Dynamical Systems: Reviews and Tutorials 8. Cham: Springer (ISBN 978-3-030-62386-9/pbk; 978-3-030-62387-6/ebook). xviii, 272 p. (2020). Reviewer: Chay Paterson (Midhurst) MSC: 92-02 92C40 92C45 92E20 60H10 60J74 60J28 PDFBibTeX XMLCite \textit{S. Winkelmann} and \textit{C. Schütte}, Stochastic dynamics in computational biology. Cham: Springer (2020; Zbl 1467.92005) Full Text: DOI
Merkli, Marco; Berman, Gennady P.; Saxena, Avadh Quantum electron transport in degenerate donor-acceptor systems. (English) Zbl 1454.81252 J. Math. Phys. 61, No. 7, 072102, 29 p. (2020). MSC: 81V55 80A30 82D20 92E20 PDFBibTeX XMLCite \textit{M. Merkli} et al., J. Math. Phys. 61, No. 7, 072102, 29 p. (2020; Zbl 1454.81252) Full Text: DOI arXiv
Wang, Qi; Liu, Yupeng Modelling antibody-antigen interactions. (English) Zbl 1453.92125 Pinelas, Sandra (ed.) et al., Differential and difference equations with applications. Selected papers based on the presentations at the fourth international conference, ICDDEA 2019, Lisbon, Portugal, July 1–5, 2019. Cham: Springer. Springer Proc. Math. Stat. 333, 621-639 (2020). MSC: 92C45 92C40 PDFBibTeX XMLCite \textit{Q. Wang} and \textit{Y. Liu}, Springer Proc. Math. Stat. 333, 621--639 (2020; Zbl 1453.92125) Full Text: DOI
Utsey, Kiersten; Keener, James P. A mathematical model for inheritance of DNA methylation patterns in somatic cells. (English) Zbl 1453.92108 Bull. Math. Biol. 82, No. 7, Paper No. 84, 23 p. (2020). MSC: 92C40 PDFBibTeX XMLCite \textit{K. Utsey} and \textit{J. P. Keener}, Bull. Math. Biol. 82, No. 7, Paper No. 84, 23 p. (2020; Zbl 1453.92108) Full Text: DOI
Johnson, Robert F.; Winfree, Erik Verifying polymer reaction networks using bisimulation. (English) Zbl 1460.68039 Theor. Comput. Sci. 843, 84-114 (2020). MSC: 68Q07 68Q60 92C40 92E20 PDFBibTeX XMLCite \textit{R. F. Johnson} and \textit{E. Winfree}, Theor. Comput. Sci. 843, 84--114 (2020; Zbl 1460.68039) Full Text: DOI Link
Deng, Qiqi; Zhou, Tianshou Memory-induced bifurcation and oscillations in the chemical Brusselator model. (English) Zbl 1448.80016 Int. J. Bifurcation Chaos Appl. Sci. Eng. 30, No. 10, Article ID 2050151, 14 p. (2020). Reviewer: Alain Brillard (Riedisheim) MSC: 80A32 92E20 60J25 44A10 34C23 PDFBibTeX XMLCite \textit{Q. Deng} and \textit{T. Zhou}, Int. J. Bifurcation Chaos Appl. Sci. Eng. 30, No. 10, Article ID 2050151, 14 p. (2020; Zbl 1448.80016) Full Text: DOI
Weller-Davies, Oliver; Steel, Mike; Hein, Jotun Complexity results for autocatalytic network models. (English) Zbl 1451.92153 Math. Biosci. 325, Article ID 108365, 10 p. (2020). MSC: 92C42 92C40 68Q17 PDFBibTeX XMLCite \textit{O. Weller-Davies} et al., Math. Biosci. 325, Article ID 108365, 10 p. (2020; Zbl 1451.92153) Full Text: DOI
Johnston, Stuart T.; Angstmann, Christopher N.; Arjunan, Satya N. V.; Beentjes, Casper H. L.; Coulier, Adrien; Isaacson, Samuel A.; Khan, Ash A.; Lipkow, Karen; Andrews, Steven S. Accurate particle-based reaction algorithms for fixed timestep simulators. (English) Zbl 1441.92003 Wood, David R. (ed.) et al., 2018 MATRIX annals. Cham: Springer. MATRIX Book Ser. 3, 149-164 (2020). MSC: 92-10 35Q92 35K57 92C40 92E20 PDFBibTeX XMLCite \textit{S. T. Johnston} et al., MATRIX Book Ser. 3, 149--164 (2020; Zbl 1441.92003) Full Text: DOI
Vassiliadis, Vassilios S.; Yuan, Ye; del Rio Chanona, Ehecatl Antonio; Kähm, Walter Optimization for chemical and biochemical engineering. Theory, algorithms, modeling and applications. (English) Zbl 1451.92002 Cambridge Series in Chemical Engineering. Cambridge: Cambridge University Press (ISBN 978-1-107-10683-3/hbk; 978-1-316-22726-8/ebook). xiv, 338 p. (2020). MSC: 92-02 92C40 92E20 PDFBibTeX XMLCite \textit{V. S. Vassiliadis} et al., Optimization for chemical and biochemical engineering. Theory, algorithms, modeling and applications. Cambridge: Cambridge University Press (2020; Zbl 1451.92002) Full Text: DOI
Cappelletti, Daniele; Ortiz-Muñoz, Andrés; Anderson, David F.; Winfree, Erik Stochastic chemical reaction networks for robustly approximating arbitrary probability distributions. (English) Zbl 1436.68111 Theor. Comput. Sci. 801, 64-95 (2020). MSC: 68Q07 60J28 68Q87 92E20 PDFBibTeX XMLCite \textit{D. Cappelletti} et al., Theor. Comput. Sci. 801, 64--95 (2020; Zbl 1436.68111) Full Text: DOI arXiv
Bihan, Frédéric; Dickenstein, Alicia; Giaroli, Magalí Lower bounds for positive roots and regions of multistationarity in chemical reaction networks. (English) Zbl 1453.92120 J. Algebra 542, 367-411 (2020). MSC: 92C45 92C40 14P25 92E20 PDFBibTeX XMLCite \textit{F. Bihan} et al., J. Algebra 542, 367--411 (2020; Zbl 1453.92120) Full Text: DOI arXiv
Venkateswarlu, Ch.; Jujjavarapu, Satya Eswari Stochastic global optimization. Methods and applications to chemical, biochemical, pharmaceutical and environmental processes. (English) Zbl 1440.93001 Amsterdam: Elsevier (ISBN 978-0-12-817392-3/pbk; 978-0-12-817393-0/ebook). xx, 289 p. (2020). Reviewer: Alex V. Kolnogorov (Novgorod) MSC: 93-01 93E20 92C40 92E20 00A06 90-06 90C59 68W50 PDFBibTeX XMLCite \textit{Ch. Venkateswarlu} and \textit{S. E. Jujjavarapu}, Stochastic global optimization. Methods and applications to chemical, biochemical, pharmaceutical and environmental processes. Amsterdam: Elsevier (2020; Zbl 1440.93001)
Anderson, David F.; Nguyen, Tung D. Results on stochastic reaction networks with non-mass action kinetics. (English) Zbl 1501.92223 Math. Biosci. Eng. 16, No. 4, 2118-2140 (2019). MSC: 92E20 92C40 92C45 92C42 PDFBibTeX XMLCite \textit{D. F. Anderson} and \textit{T. D. Nguyen}, Math. Biosci. Eng. 16, No. 4, 2118--2140 (2019; Zbl 1501.92223) Full Text: DOI arXiv
Kruff, Niclas; Walcher, Sebastian Coordinate-independent singular perturbation reduction for systems with three time scales. (English) Zbl 1497.92372 Math. Biosci. Eng. 16, No. 5, 5062-5091 (2019). MSC: 92E20 92C40 34D15 PDFBibTeX XMLCite \textit{N. Kruff} and \textit{S. Walcher}, Math. Biosci. Eng. 16, No. 5, 5062--5091 (2019; Zbl 1497.92372) Full Text: DOI arXiv
Craciun, Gheorghe; Müller, Stefan; Pantea, Casian; Yu, Polly Y. A generalization of Birch’s theorem and vertex-balanced steady states for generalized mass-action systems. (English) Zbl 1478.92073 Math. Biosci. Eng. 16, No. 6, 8243-8267 (2019). Reviewer: Dieter Erle (Dortmund) MSC: 92C45 92C40 92C42 92E20 57N75 57R99 62P10 PDFBibTeX XMLCite \textit{G. Craciun} et al., Math. Biosci. Eng. 16, No. 6, 8243--8267 (2019; Zbl 1478.92073) Full Text: DOI arXiv
Mckemmish, Laura K.; Tennyson, Jonathan General mathematical formulation of scattering processes in atom-diatomic collisions in the RmatReact methodology. (English) Zbl 1462.92061 Philos. Trans. R. Soc. Lond., A, Math. Phys. Eng. Sci. 377, No. 2154, Article ID 20180409, 20 p. (2019). MSC: 92E20 PDFBibTeX XMLCite \textit{L. K. Mckemmish} and \textit{J. Tennyson}, Philos. Trans. R. Soc. Lond., A, Math. Phys. Eng. Sci. 377, No. 2154, Article ID 20180409, 20 p. (2019; Zbl 1462.92061) Full Text: DOI arXiv
Hamed, Mohammad Abu; Nepomnyashchy, Alexander A. Longwave nonlinear theory for chemically active droplet division instability. (English) Zbl 1451.92352 Physica D 391, 1-7 (2019). MSC: 92E20 92C40 35Q92 PDFBibTeX XMLCite \textit{M. A. Hamed} and \textit{A. A. Nepomnyashchy}, Physica D 391, 1--7 (2019; Zbl 1451.92352) Full Text: DOI arXiv
Macías-Díaz, Jorge E. An efficient and fully explicit model to simulate delayed activator-inhibitor systems with anomalous diffusion. (English) Zbl 1421.92042 J. Math. Chem. 57, No. 8, 1902-1923 (2019). MSC: 92E20 35Q92 65M06 65M12 65Q10 PDFBibTeX XMLCite \textit{J. E. Macías-Díaz}, J. Math. Chem. 57, No. 8, 1902--1923 (2019; Zbl 1421.92042) Full Text: DOI
Chou, Tom; Liang, Jie; Manuchehrfar, Farid; Tian, Wei Evolution of coagulation-fragmentation stochastic processes using accurate chemical master equation approach. (English) Zbl 1509.82127 Commun. Inf. Syst. 19, No. 1, 37-55 (2019). MSC: 82D60 92C40 92C45 92E20 35Q82 35Q92 35R60 PDFBibTeX XMLCite \textit{T. Chou} et al., Commun. Inf. Syst. 19, No. 1, 37--55 (2019; Zbl 1509.82127) Full Text: DOI arXiv
Feinberg, Martin Foundations of chemical reaction network theory. (English) Zbl 1420.92001 Applied Mathematical Sciences 202. Cham: Springer (ISBN 978-3-030-03857-1/hbk; 978-3-030-03858-8/ebook). xxix, 454 p. (2019). Reviewer: Dieter Erle (Dortmund) MSC: 92-02 92E20 92C40 92C42 92C45 76V05 93D05 05C90 PDFBibTeX XMLCite \textit{M. Feinberg}, Foundations of chemical reaction network theory. Cham: Springer (2019; Zbl 1420.92001) Full Text: DOI
Sabelfeld, Karl K. A random walk on spheres based kinetic Monte Carlo method for simulation of the fluctuation-limited bimolecular reactions. (English) Zbl 1484.82047 Math. Comput. Simul. 143, 46-56 (2018). MSC: 82C41 82M31 60H35 82C44 82D37 82M20 81V55 PDFBibTeX XMLCite \textit{K. K. Sabelfeld}, Math. Comput. Simul. 143, 46--56 (2018; Zbl 1484.82047) Full Text: DOI
Kumar, Rohit; Puri, Ishita On the different clusterization algorithms and role of cross-sections in forming complex multi bound structures using Monte-Carlo simulations. (English) Zbl 07056013 Proc. Jangjeon Math. Soc. 21, No. 4, 745-758 (2018). MSC: 65Pxx 65Zxx 65Yxx PDFBibTeX XMLCite \textit{R. Kumar} and \textit{I. Puri}, Proc. Jangjeon Math. Soc. 21, No. 4, 745--758 (2018; Zbl 07056013)
Kuhn, Stefan Simulation of base excision repair in the calculus of covalent bonding. (English) Zbl 1515.68209 Kari, Jarkko (ed.) et al., Reversible computation. 10th international conference, RC 2018, Leicester, UK, September 12–14, 2018. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11106, 123-129 (2018). MSC: 68Q85 68Q09 92C40 92E20 PDFBibTeX XMLCite \textit{S. Kuhn}, Lect. Notes Comput. Sci. 11106, 123--129 (2018; Zbl 1515.68209) Full Text: DOI
Agazzi, A.; Dembo, A.; Eckmann, J.-P. On the geometry of chemical reaction networks: Lyapunov function and large deviations. (English) Zbl 1401.60042 J. Stat. Phys. 172, No. 2, 321-352 (2018). MSC: 60F10 80A30 92E20 PDFBibTeX XMLCite \textit{A. Agazzi} et al., J. Stat. Phys. 172, No. 2, 321--352 (2018; Zbl 1401.60042) Full Text: DOI arXiv
Agliari, Elena; Barra, Adriano; Landolfi, Giulio; Murciano, Sara; Perrone, Sarah Complex reaction kinetics in chemistry: a unified picture suggested by mechanics in physics. (English) Zbl 1390.92171 Complexity 2018, Article ID 7423297, 16 p. (2018). MSC: 92E20 PDFBibTeX XMLCite \textit{E. Agliari} et al., Complexity 2018, Article ID 7423297, 16 p. (2018; Zbl 1390.92171) Full Text: DOI arXiv
De Battista, Hernán; Jamilis, Martín; Garelli, Fabricio; Picó, Jesús Global stabilisation of continuous bioreactors: tools for analysis and design of feeding laws. (English) Zbl 1388.93072 Automatica 89, 340-348 (2018). MSC: 93D20 92C40 92E20 93C10 PDFBibTeX XMLCite \textit{H. De Battista} et al., Automatica 89, 340--348 (2018; Zbl 1388.93072) Full Text: DOI Link
Rezaei, Mehdi; Sardar, Muhammad Sh.; Zafar, Sohail; Farahani, Mohammad R. Narumi-Katayama and modified Narumi-Katayama indices of graphs. (English) Zbl 1448.05046 J. Prime Res. Math. 13, 8-15 (2017). MSC: 05C09 05C12 05C90 92E20 PDFBibTeX XMLCite \textit{M. Rezaei} et al., J. Prime Res. Math. 13, 8--15 (2017; Zbl 1448.05046) Full Text: Link
Cerrito, Serenella; Mayer, Marta Cialdea; Demolombe, Robert Temporal abductive reasoning about biochemical reactions. (English) Zbl 1398.03154 J. Appl. Non-Class. Log. 27, No. 3-4, 269-291 (2017). MSC: 03B80 03B44 92C40 92E20 PDFBibTeX XMLCite \textit{S. Cerrito} et al., J. Appl. Non-Class. Log. 27, No. 3--4, 269--291 (2017; Zbl 1398.03154) Full Text: DOI Link
Levien, Ethan; Bressloff, Paul C. Coupling sample paths to the thermodynamic limit in Monte Carlo estimators with applications to gene expression. (English) Zbl 1378.65023 J. Comput. Phys. 346, 1-13 (2017). MSC: 65C05 92E20 92C40 PDFBibTeX XMLCite \textit{E. Levien} and \textit{P. C. Bressloff}, J. Comput. Phys. 346, 1--13 (2017; Zbl 1378.65023) Full Text: DOI
Chen, Ho-Lin; Cummings, Rachel; Doty, David; Soloveichik, David Speed faults in computation by chemical reaction networks. (English) Zbl 1425.68108 Distrib. Comput. 30, No. 5, 373-390 (2017). MSC: 68Q05 68Q10 92C40 92E20 PDFBibTeX XMLCite \textit{H.-L. Chen} et al., Distrib. Comput. 30, No. 5, 373--390 (2017; Zbl 1425.68108) Full Text: DOI Link
Zhou, Jun Pattern formation in a general Degn-Harrison reaction model. (English) Zbl 1373.35044 Bull. Korean Math. Soc. 54, No. 2, 655-666 (2017). MSC: 35B36 35B32 35K57 35K51 92C40 92C45 92E20 PDFBibTeX XMLCite \textit{J. Zhou}, Bull. Korean Math. Soc. 54, No. 2, 655--666 (2017; Zbl 1373.35044) Full Text: DOI
Scherer, Philipp O. J.; Fischer, Sighart F. Theoretical molecular biophysics. 2nd edition. (English) Zbl 1395.92001 Biological and Medical Physics, Biomedical Engineering. Berlin: Springer (ISBN 978-3-662-55670-2/hbk; 978-3-662-55671-9/ebook). xvi, 513 p. (2017). Reviewer: Eugene Kryachko (Liège) MSC: 92-01 92C05 92E10 81-01 81V55 92E20 92D20 PDFBibTeX XMLCite \textit{P. O. J. Scherer} and \textit{S. F. Fischer}, Theoretical molecular biophysics. 2nd edition. Berlin: Springer (2017; Zbl 1395.92001) Full Text: DOI
Dougoud, M.; Mazza, C.; Vinckenbosch, L. Ultrasensitivity and sharp threshold theorems for multisite systems. (English) Zbl 1358.92041 J. Phys. A, Math. Theor. 50, No. 7, Article ID 075601, 25 p. (2017). MSC: 92C40 60K35 60J85 PDFBibTeX XMLCite \textit{M. Dougoud} et al., J. Phys. A, Math. Theor. 50, No. 7, Article ID 075601, 25 p. (2017; Zbl 1358.92041) Full Text: DOI arXiv
Dehmer, Matthias (ed.); Shi, Yongtang (ed.); Emmert-Streib, Frank (ed.) Computational network analysis with R. Applications in biology, medicine and chemistry. (English) Zbl 1348.92001 Quantitative and Network Biology 7. Weinheim: Wiley-VCH (ISBN 978-3-527-33958-7/hbk; 978-3-527-69436-5/ebook). xvii, 343 p. (2017). MSC: 92-01 92-08 92C42 92D15 92C40 92E20 PDFBibTeX XMLCite \textit{M. Dehmer} (ed.) et al., Computational network analysis with R. Applications in biology, medicine and chemistry. Weinheim: Wiley-VCH (2017; Zbl 1348.92001) Full Text: DOI
Sirakoulis, Georgios Ch. Parallel application of hybrid DNA cellular automata for pseudorandom number generation. (English) Zbl 1432.68294 J. Cell. Autom. 11, No. 1, 63-89 (2016). MSC: 68Q80 65C10 68Q07 PDFBibTeX XMLCite \textit{G. Ch. Sirakoulis}, J. Cell. Autom. 11, No. 1, 63--89 (2016; Zbl 1432.68294) Full Text: Link
Krüger, Thilo; Wolf, Verena Hybrid stochastic simulation of rule-based polymerization models. (English) Zbl 1428.92133 Cinquemani, Eugenio (ed.) et al., Hybrid systems biology. 5th international workshop, HSB 2016, Grenoble, France, October 20–21, 2016. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 9957, 39-53 (2016). MSC: 92E20 80A30 92C40 92C45 60H30 PDFBibTeX XMLCite \textit{T. Krüger} and \textit{V. Wolf}, Lect. Notes Comput. Sci. 9957, 39--53 (2016; Zbl 1428.92133) Full Text: DOI Link
Scalise, Dominic; Schulman, Rebecca Emulating cellular automata in chemical reaction-diffusion networks. (English) Zbl 1416.92198 Nat. Comput. 15, No. 2, 197-214 (2016). MSC: 92E20 68Q05 68Q10 68Q80 PDFBibTeX XMLCite \textit{D. Scalise} and \textit{R. Schulman}, Nat. Comput. 15, No. 2, 197--214 (2016; Zbl 1416.92198) Full Text: DOI
Prokudina, L. A. Mathematical modeling of oregonator with a diffusion type communication. (English) Zbl 1357.92029 J. Comput. Eng. Math. 3, No. 2, 48-56 (2016). MSC: 92C40 92E20 35K57 35B32 PDFBibTeX XMLCite \textit{L. A. Prokudina}, J. Comput. Eng. Math. 3, No. 2, 48--56 (2016; Zbl 1357.92029) Full Text: DOI
Feliu, Elisenda On the positive solutions of systems of parametrized polynomials in biology. (Sobre las soluciones positivas de sistemas de polinomios parametrizados en biología.) (Spanish) Zbl 1356.92031 Gac. R. Soc. Mat. Esp. 19, No. 1, 113-132 (2016). MSC: 92C40 92E20 34B18 65L05 PDFBibTeX XMLCite \textit{E. Feliu}, Gac. R. Soc. Mat. Esp. 19, No. 1, 113--132 (2016; Zbl 1356.92031)
Harwood, Stuart M.; Höffner, Kai; Barton, Paul I. Efficient solution of ordinary differential equations with a parametric lexicographic linear program embedded. (English) Zbl 1351.65048 Numer. Math. 133, No. 4, 623-653 (2016). Reviewer: Kanakadurga Sivakumar (Chennai) MSC: 65L05 34A38 90C05 90C99 65L80 34A09 92C40 PDFBibTeX XMLCite \textit{S. M. Harwood} et al., Numer. Math. 133, No. 4, 623--653 (2016; Zbl 1351.65048) Full Text: DOI Link
Flegg, Mark B. Smoluchowski reaction kinetics for reactions of any order. (English) Zbl 1362.37162 SIAM J. Appl. Math. 76, No. 4, 1403-1432 (2016). Reviewer: Ilya A. Chernov (Petrozavodsk) MSC: 37N25 37M05 68U20 92E20 60J70 80A30 92C40 PDFBibTeX XMLCite \textit{M. B. Flegg}, SIAM J. Appl. Math. 76, No. 4, 1403--1432 (2016; Zbl 1362.37162) Full Text: DOI arXiv
Giordano, Giulia; Cuba Samaniego, Christian; Franco, Elisa; Blanchini, Franco Computing the structural influence matrix for biological systems. (English) Zbl 1359.92040 J. Math. Biol. 72, No. 7, 1927-1958 (2016). MSC: 92C42 15B35 34A34 92C40 92E20 PDFBibTeX XMLCite \textit{G. Giordano} et al., J. Math. Biol. 72, No. 7, 1927--1958 (2016; Zbl 1359.92040) Full Text: DOI
Bykov, V.; Gol’dshtein, V. Model reduction of the intracellular-signaling subsystem of apoptosis. (English) Zbl 1338.92038 Math. Biosci. 275, 39-50 (2016). MSC: 92C37 92C40 PDFBibTeX XMLCite \textit{V. Bykov} and \textit{V. Gol'dshtein}, Math. Biosci. 275, 39--50 (2016; Zbl 1338.92038) Full Text: DOI
Gupta, V. P. Principles and applications of quantum chemistry. (English) Zbl 1334.81005 Amsterdam: Elsevier/Academic Press (ISBN 978-0-12-803478-1/pbk). xxxi, 446 p. (2016). Reviewer: T. C. Mohan (Chennai) MSC: 81-02 81V55 00A79 92E20 82B30 82B35 80A32 PDFBibTeX XMLCite \textit{V. P. Gupta}, Principles and applications of quantum chemistry. Amsterdam: Elsevier/Academic Press (2016; Zbl 1334.81005) Full Text: Link
Li, Chun; Yang, Yan; Fei, Wenchao; He, Ping-an; Yu, Xiaoqing; Zhang, Defu; Yi, Shumin; Li, Xuepeng; Zhu, Jin; Wang, Changzhong; Wang, Zhifu Prediction of success for polymerase chain reactions using the Markov maximal order model and support vector machine. (English) Zbl 1406.92194 J. Theor. Biol. 369, 51-58 (2015). MSC: 92C40 68T05 60J20 PDFBibTeX XMLCite \textit{C. Li} et al., J. Theor. Biol. 369, 51--58 (2015; Zbl 1406.92194) Full Text: DOI
Bouraoui, Ibtissem; Farza, Mondher; Ménard, Tomas; Abdennour, Ridha Ben; M’Saad, Mohammed; Mosrati, Henda Observer design for a class of uncertain nonlinear systems with sampled outputs – application to the estimation of kinetic rates in bioreactors. (English) Zbl 1378.93023 Automatica 55, 78-87 (2015). MSC: 93B07 93C10 92C40 93D15 93C57 PDFBibTeX XMLCite \textit{I. Bouraoui} et al., Automatica 55, 78--87 (2015; Zbl 1378.93023) Full Text: DOI
Pavlova, J.; Fasano, A.; Janela, J.; Sequeira, A. Numerical validation of a synthetic cell-based model of blood coagulation. (English) Zbl 1343.92113 J. Theor. Biol. 380, 367-379 (2015). MSC: 92C35 76Z05 92C40 PDFBibTeX XMLCite \textit{J. Pavlova} et al., J. Theor. Biol. 380, 367--379 (2015; Zbl 1343.92113) Full Text: DOI
Qian, Hong Book review of: P. Érdi and G. Lente, Stochastic chemical kinetics. Theory and (mostly) systems biological applications. (English) Zbl 1336.00068 SIAM Rev. 57, No. 3, 475-477 (2015). MSC: 00A17 92-02 92E20 92C40 92C42 PDFBibTeX XMLCite \textit{H. Qian}, SIAM Rev. 57, No. 3, 475--477 (2015; Zbl 1336.00068) Full Text: DOI
Huang, Ya-Jing; Hong, Liu; Yong, Wen-An Partial equilibrium approximations in apoptosis. II: The death-inducing signaling complex subsystem. (English) Zbl 1364.92008 Math. Biosci. 270, Part A, 126-134 (2015). MSC: 92C37 92C40 PDFBibTeX XMLCite \textit{Y.-J. Huang} et al., Math. Biosci. 270, Part A, 126--134 (2015; Zbl 1364.92008) Full Text: DOI
Radulescu, O.; Vakulenko, S.; Grigoriev, D. Model reduction of biochemical reactions networks by tropical analysis methods. (English) Zbl 1369.92047 Math. Model. Nat. Phenom. 10, No. 3, 124-138 (2015). MSC: 92C45 92C40 PDFBibTeX XMLCite \textit{O. Radulescu} et al., Math. Model. Nat. Phenom. 10, No. 3, 124--138 (2015; Zbl 1369.92047) Full Text: DOI arXiv Link
Vasas, Vera; Fernando, Chrisantha; Szilágyi, András; Zachár, István; Santos, Mauro; Szathmáry, Eörs Primordial evolvability: impasses and challenges. (English) Zbl 1321.92053 J. Theor. Biol. 381, 29-38 (2015). MSC: 92C45 92D15 92C40 92E20 PDFBibTeX XMLCite \textit{V. Vasas} et al., J. Theor. Biol. 381, 29--38 (2015; Zbl 1321.92053) Full Text: DOI
Frost, V. A. The reaction zone in the turbulent reactive fluid. (Russian. English summary) Zbl 1340.76038 Mat. Model. 27, No. 2, 63-73 (2015). Reviewer: Sergei Georgievich Zhuravlev (Moskva) MSC: 76F05 76F25 92E20 PDFBibTeX XMLCite \textit{V. A. Frost}, Mat. Model. 27, No. 2, 63--73 (2015; Zbl 1340.76038) Full Text: MNR
Bayón, L.; Otero, J. A.; Ruiz, M. M.; Suárez, P. M.; Tasis, C. Sensitivity analysis of a linear and unbranched chemical process with \(n\) steps. (English) Zbl 1318.49003 J. Math. Chem. 53, No. 3, 925-940 (2015). MSC: 49J15 49K15 49K40 49M05 92E20 80A30 92C40 PDFBibTeX XMLCite \textit{L. Bayón} et al., J. Math. Chem. 53, No. 3, 925--940 (2015; Zbl 1318.49003) Full Text: DOI
Yuste, S. B.; Abad, E.; Lindenberg, K. A reaction-subdiffusion model of fluorescence recovery after photobleaching (FRAP). (English) Zbl 1456.92068 J. Stat. Mech. Theory Exp. 2014, No. 11, Paper No. P11014, 21 p. (2014). MSC: 92C40 60J70 92E20 PDFBibTeX XMLCite \textit{S. B. Yuste} et al., J. Stat. Mech. Theory Exp. 2014, No. 11, Paper No. P11014, 21 p. (2014; Zbl 1456.92068) Full Text: DOI arXiv
Chen, Jiang-Xing; Zhu, Jin-Xing; Zhao, Ye-Hua; Sun, Wei-Gang; Xu, Jiang-Rong; Ying, He-ping Simulating bistable biochemical systems by means of reactive multiparticle collision dynamics. (English) Zbl 1457.92204 Commun. Nonlinear Sci. Numer. Simul. 19, No. 7, 2505-2512 (2014). MSC: 92E20 92C40 37N99 PDFBibTeX XMLCite \textit{J.-X. Chen} et al., Commun. Nonlinear Sci. Numer. Simul. 19, No. 7, 2505--2512 (2014; Zbl 1457.92204) Full Text: DOI
Liu, Rong-Xiang; Tian, Bo; Jiang, Yan; Wang, Pan Dark solitonic excitations and collisions from a fourth-order dispersive nonlinear Schrödinger model for the alpha helical protein. (English) Zbl 1470.35335 Commun. Nonlinear Sci. Numer. Simul. 19, No. 3, 520-529 (2014). MSC: 35Q55 35C08 92C40 92E20 PDFBibTeX XMLCite \textit{R.-X. Liu} et al., Commun. Nonlinear Sci. Numer. Simul. 19, No. 3, 520--529 (2014; Zbl 1470.35335) Full Text: DOI
Mogharrab, M. (ed.) Special issue: Extended abstracts of the 6th conference and workshop on mathematical chemistry, Persian Gulf University, Bushehr, Iran, February 13–14, 2013. (English) Zbl 1368.92004 Iran. J. Math. Chem. 5, Suppl. 1, 51 p. (2014). MSC: 92-06 92E10 92E20 00B05 00B25 PDFBibTeX XML Full Text: Link
van Heerden, Johan H.; Worte, Meike T.; Bruggeman, Frank J.; Heijnen, Joseph J.; Bollen, Yves J. M.; Planqué, Robert; Hulshof, Josephus; O’Toole, Tom G.; Wahl, S. Aljoscha; Teusink, Bas Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells. (English) Zbl 1355.92047 Science 343, No. 6174, 1245114, 4 p. (2014). MSC: 92C45 92C40 PDFBibTeX XMLCite \textit{J. H. van Heerden} et al., Science 343, No. 6174, 1245114, 4 p. (2014; Zbl 1355.92047) Full Text: DOI
Karamitros, M.; Luan, S.; Bernal, M. A.; Allison, J.; Baldacchino, G.; Davidkova, M.; Francis, Z.; Friedland, W.; Ivantchenko, V.; Ivantchenko, A.; Mantero, A.; Nieminem, P.; Santin, G.; Tran, H. N.; Stepan, V.; Incerti, S. Diffusion-controlled reactions modeling in Geant4-DNA. (English) Zbl 1352.92054 J. Comput. Phys. 274, 841-882 (2014). MSC: 92C40 92E20 82C80 PDFBibTeX XMLCite \textit{M. Karamitros} et al., J. Comput. Phys. 274, 841--882 (2014; Zbl 1352.92054) Full Text: DOI
Andersen, Jakob Lykke; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F. 50 shades of rule composition. From chemical reactions to higher levels of abstraction. (English) Zbl 1402.92166 Fages, François (ed.) et al., Formal methods in macro-biology. First international conference, FMMB 2014, Nouméa, New Caledonia, September 22–24, 2014. Proceedings. Berlin: Springer (ISBN 978-3-319-10397-6/pbk). Lecture Notes in Computer Science 8738. Lecture Notes in Bioinformatics, 117-135 (2014). MSC: 92C40 05C90 PDFBibTeX XMLCite \textit{J. L. Andersen} et al., Lect. Notes Comput. Sci. 8738, 117--135 (2014; Zbl 1402.92166) Full Text: DOI
Érdi, Péter; Lente, Gábor Stochastic chemical kinetics. Theory and (mostly) systems biological applications. (English) Zbl 1307.92005 Springer Series in Synergetics. New York, NY: Springer (ISBN 978-1-4939-0386-3/hbk; 978-1-4939-0387-0/ebook). xiv, 162 p. (2014). MSC: 92-02 92E20 92C40 92C42 PDFBibTeX XMLCite \textit{P. Érdi} and \textit{G. Lente}, Stochastic chemical kinetics. Theory and (mostly) systems biological applications. New York, NY: Springer (2014; Zbl 1307.92005) Full Text: DOI
Chen, Ho-Lin; Cummings, Rachel; Doty, David; Soloveichik, David Speed faults in computation by chemical reaction networks. (English) Zbl 1425.68107 Kuhn, Fabian (ed.), Distributed computing. 28th international symposium, DISC 2014, Austin, TX, USA, October 12–15, 2014. Proceedings. Berlin: Springer. Lect. Notes Comput. Sci. 8784, 16-30 (2014). MSC: 68Q05 68Q10 92C40 92E20 PDFBibTeX XMLCite \textit{H.-L. Chen} et al., Lect. Notes Comput. Sci. 8784, 16--30 (2014; Zbl 1425.68107) Full Text: DOI Link
Simpson, D. J. W. Book review of: Z. Schuss, Brownian dynamics at boundaries and interfaces. In physics, chemistry, and biology. (English) Zbl 1306.00024 SIAM Rev. 56, No. 4, 72-723 (2014). MSC: 00A17 60-02 60-08 60H10 60J60 35Q84 92E20 92C05 92C20 92C40 PDFBibTeX XMLCite \textit{D. J. W. Simpson}, SIAM Rev. 56, No. 4, 72--723 (2014; Zbl 1306.00024) Full Text: DOI