Boileau, Philippe; Hejazi, Nima S.; van der Laan, Mark J.; Dudoit, Sandrine Cross-validated loss-based covariance matrix estimator selection in high dimensions. (English) Zbl 07747461 J. Comput. Graph. Stat. 32, No. 2, 601-612 (2023). MSC: 62-XX PDFBibTeX XMLCite \textit{P. Boileau} et al., J. Comput. Graph. Stat. 32, No. 2, 601--612 (2023; Zbl 07747461) Full Text: DOI arXiv
Cleynen, Alice; Dudoit, Sandrine; Robin, Stéphane Comparing segmentation methods for genome annotation based on RNA-seq data. (English) Zbl 1303.62064 J. Agric. Biol. Environ. Stat. 19, No. 1, 101-118 (2014). MSC: 62P12 PDFBibTeX XMLCite \textit{A. Cleynen} et al., J. Agric. Biol. Environ. Stat. 19, No. 1, 101--118 (2014; Zbl 1303.62064) Full Text: DOI
Datta, Somnath (ed.); Nettleton, Dan (ed.) [Bickel, Peter J.; Boley, Nathan; Brown, James Bentley; Chen, Mengjie; Chen, Yunshun; Chung, Dongjun; Collado Torres, Leonardo; Datta, Somnath; Datta, Susmita; Du, Ruofei; Dudoit, Sandrine; Fang, Zhide; Frazee, Alyssa C.; Ghosh, Debashis; Gill, Ryan S.; Girirajan, Santhosh; Hou, Lin; Hu, Yijuan; Huang, Haiyan; Jaffe, Andrew E.; Keleş, Sündüz; Langmead, Ben; Leek, Jeffrey T.; Li, Hongzhe; Liu, Peng; Lorenz, Douglas J.; Lun, Aaron T. L.; Mitra, Ritendranath; Müller, Peter; Nettleton, Dan; Ngai, John; Petersen, Ashley; Riebler, Andrea; Risso, Davide; Robinson, Mark D.; Salzman, Julia; Seshan, Venkatraman E.; Si, Yaqing; Smyth, Gordon K.; Speed, Terence P.; Sun, Wei; Tan, Kean Ming; van de Wiel, Mark A.; Witten, Daniela; Xiong, Hao; Zhang, Kui; Zhang, Qi; Zhao, Hongyu; Zhi, Degui] Statistical analysis of next generation sequencing data. (English) Zbl 1296.92001 Frontiers in Probability and the Statistical Sciences. Cham: Springer (ISBN 978-3-319-07211-1/hbk; 978-3-319-07212-8/ebook). xiv, 432 p. (2014). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-01 92-02 92-06 92-08 92C40 92D20 62P10 PDFBibTeX XMLCite \textit{S. Datta} (ed.) and \textit{D. Nettleton} (ed.), Statistical analysis of next generation sequencing data. Cham: Springer (2014; Zbl 1296.92001) Full Text: DOI
Jacob, Laurent; Neuvial, Pierre; Dudoit, Sandrine More power via graph-structured tests for differential expression of gene networks. (English) Zbl 1243.62080 Ann. Appl. Stat. 6, No. 2, 561-600 (2012). MSC: 62H15 05C90 92C42 92C40 62P10 65C60 PDFBibTeX XMLCite \textit{L. Jacob} et al., Ann. Appl. Stat. 6, No. 2, 561--600 (2012; Zbl 1243.62080) Full Text: DOI arXiv Euclid
Speed, Terry Dudoit, Sandrine (ed.) Selected works of Terry Speed. Edited by Sandrine Dudoit. (English) Zbl 1271.01047 Selected Works in Probability and Statistics. New York, NY: Springer (ISBN 978-1-4614-1346-2/hbk; 978-1-4614-1347-9/ebook). xxx, 665 p. (2012). MSC: 01A75 62-03 60-03 92-03 62B05 62Jxx 62P10 60K35 92Dxx PDFBibTeX XMLCite \textit{T. Speed} and \textit{S. Dudoit} (ed.), Selected works of Terry Speed. Edited by Sandrine Dudoit. New York, NY: Springer (2012; Zbl 1271.01047) Full Text: DOI
Dudoit, Sandrine; Gilbert, Houston N.; van der Laan, Mark J. Resampling-based empirical Bayes multiple testing procedures for controlling generalized tail probability and expected value error rates: focus on the false discovery rate and simulation study. (English) Zbl 1442.62338 Biom. J. 50, No. 5, 716-744 (2008). MSC: 62P10 PDFBibTeX XMLCite \textit{S. Dudoit} et al., Biom. J. 50, No. 5, 716--744 (2008; Zbl 1442.62338) Full Text: DOI Link
Dudoit, Sandrine; Keleş, Sündüz; van der Laan, Mark J. Multiple tests of association with biological annotation metadata. (English) Zbl 1168.62100 Nolan, Deborah (ed.) et al., Probability and statistics: Essays in honor of David A. Freedman. Beachwood, OH: IMS, Institute of Mathematical Statistics (ISBN 978-0-940600-74-4/pbk). Institute of Mathematical Statistics Collections 2, 153-218 (2008). MSC: 62P10 62N03 92D10 92C40 PDFBibTeX XMLCite \textit{S. Dudoit} et al., Inst. Math. Stat. Collect. 2, 153--218 (2008; Zbl 1168.62100) Full Text: DOI arXiv
Durbin, Blythe; Dudoit, Sandrine; van der Laan, Mark J. A deletion/substitution/addition algorithm for classification neural networks, with applications to biomedical data. (English) Zbl 1138.62058 J. Stat. Plann. Inference 138, No. 2, 464-488 (2008). MSC: 62M45 65C60 62H30 62P10 PDFBibTeX XMLCite \textit{B. Durbin} et al., J. Stat. Plann. Inference 138, No. 2, 464--488 (2008; Zbl 1138.62058) Full Text: DOI
Dudoit, Sandrine; van der Laan, Mark J. Multiple testing procedures with applications to genomics. (English) Zbl 1261.62014 Springer Series in Statistics. New York, NY: Springer (ISBN 978-0-387-49316-9/hbk). xxxiii, 588 p. (2008). MSC: 62F03 62-02 62P10 62J15 92C40 PDFBibTeX XMLCite \textit{S. Dudoit} and \textit{M. J. van der Laan}, Multiple testing procedures with applications to genomics. New York, NY: Springer (2008; Zbl 1261.62014) Full Text: DOI
Rubin, Daniel; Dudoit, Sandrine; Van der Laan, Mark A method to increase the power of multiple testing procedures through sample splitting. (English) Zbl 1166.62318 Stat. Appl. Genet. Mol. Biol. 5, No. 1, Article 19 (2006). MSC: 62J15 62P10 PDFBibTeX XMLCite \textit{D. Rubin} et al., Stat. Appl. Genet. Mol. Biol. 5, No. 1, Article 19 (2006; Zbl 1166.62318) Full Text: DOI Link Link
van der Laan, Mark J.; Dudoit, Sandrine; van der Vaart, Aad W. The cross-validated adaptive epsilon-net estimator. (English) Zbl 1111.62003 Stat. Decis. 24, No. 3, 373-395 (2006). MSC: 62A01 62G07 62J99 65C60 PDFBibTeX XMLCite \textit{M. J. van der Laan} et al., Stat. Decis. 24, No. 3, 373--395 (2006; Zbl 1111.62003) Full Text: DOI Link
van der Vaart, Aad W.; Dudoit, Sandrine; van der Laan, Mark J. Oracle inequalities for multi-fold cross validation. (English) Zbl 1117.62042 Stat. Decis. 24, No. 3, 351-371 (2006). MSC: 62G08 60E15 62G15 62G20 62F25 PDFBibTeX XMLCite \textit{A. W. van der Vaart} et al., Stat. Decis. 24, No. 3, 351--371 (2006; Zbl 1117.62042) Full Text: DOI Link
Hothorn, Torsten; Bühlmann, Peter; Dudoit, Sandrine; Molinaro, Annette; Van der Laan, Mark J. Survival ensembles. (English) Zbl 1170.62385 Biostatistics 7, No. 3, 355-373 (2006). MSC: 62P10 92C50 62N01 PDFBibTeX XMLCite \textit{T. Hothorn} et al., Biostatistics 7, No. 3, 355--373 (2006; Zbl 1170.62385) Full Text: DOI
Dudoit, Sandrine; Van der Laan, Mark J. Asymptotics of cross-validated risk estimation in estimator selection and performance assessment. (English) Zbl 1248.62004 Stat. Methodol. 2, No. 2, 131-154 (2005). MSC: 62A99 62C99 62G07 PDFBibTeX XMLCite \textit{S. Dudoit} and \textit{M. J. Van der Laan}, Stat. Methodol. 2, No. 2, 131--154 (2005; Zbl 1248.62004) Full Text: DOI
Gentleman, Robert (ed.); Carey, Vincent J. (ed.); Huber, Wolfgang (ed.); Irizarry, Rafael A. (ed.); Dudoit, Sandrine (ed.) Bioinformatics and computational biology solutions using R and Bioconductor. (English) Zbl 1142.62100 Statistics for Biology and Health. New York, NY: Springer (ISBN 0-387-25146-4/hbk). xix, 473 p. (2005). MSC: 62P10 92-08 62-04 92C40 92-04 62-06 92-06 00B15 PDFBibTeX XMLCite \textit{R. Gentleman} (ed.) et al., Bioinformatics and computational biology solutions using R and Bioconductor. New York, NY: Springer (2005; Zbl 1142.62100) Full Text: DOI
Van der Laan, Mark J.; Dudoit, Sandrine; Pollard, Katherine S. Augmentation procedures for control of the generalized family-wise error rate and tail probabilities for the proportion of false positives. (English) Zbl 1166.62379 Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 15 (2004). MSC: 62P10 PDFBibTeX XMLCite \textit{M. J. Van der Laan} et al., Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 15 (2004; Zbl 1166.62379) Full Text: Link
Van der Laan, Mark J.; Dudoit, Sandrine; Pollard, Katherine S. Multiple testing. II: Step-down procedures for control of the family-wise error rate. (English) Zbl 1166.62378 Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 14 (2004). MSC: 62P10 PDFBibTeX XMLCite \textit{M. J. Van der Laan} et al., Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 14 (2004; Zbl 1166.62378) Full Text: Link
Dudoit, Sandrine; Van der Laan, Mark J.; Pollard, Katherine S. Multiple testing. I: Single-step procedures for control of general type I error rates. (English) Zbl 1166.62338 Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 13 (2004). MSC: 62P10 PDFBibTeX XMLCite \textit{S. Dudoit} et al., Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 13 (2004; Zbl 1166.62338) Full Text: DOI Link
Keleş, Sündüz; van der Laan, Mark; Dudoit, Sandrine Asymptotically optimal model selection method with right censored outcomes. (English) Zbl 1064.62047 Bernoulli 10, No. 6, 1011-1037 (2004). MSC: 62G08 62N02 62N01 62G20 PDFBibTeX XMLCite \textit{S. Keleş} et al., Bernoulli 10, No. 6, 1011--1037 (2004; Zbl 1064.62047) Full Text: DOI
Molinaro, Annette M.; Dudoit, Sandrine; Van der Laan, Mark J. Tree-based multivariate regression and density estimation with right-censored data. (English) Zbl 1048.62046 J. Multivariate Anal. 90, No. 1, 154-177 (2004). MSC: 62G08 62H99 62N02 62G07 62N01 62P10 PDFBibTeX XMLCite \textit{A. M. Molinaro} et al., J. Multivariate Anal. 90, No. 1, 154--177 (2004; Zbl 1048.62046) Full Text: DOI Link
Van der Laan, Mark J.; Dudoit, Sandrine; Keles, Sunduz Asymptotic optimality of likelihood-based cross-validation. (English) Zbl 1038.62040 Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 4 (2004). MSC: 62G07 62P10 92C40 62G20 PDFBibTeX XMLCite \textit{M. J. Van der Laan} et al., Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 4 (2004; Zbl 1038.62040) Full Text: Link
Dudoit, Sandrine; Shaffer, Juliet Popper; Boldrick, Jennifer C. Multiple hypothesis testing in microarray experiments. (English) Zbl 1048.62099 Stat. Sci. 18, No. 1, 71-103 (2003). MSC: 62P10 92C40 62F03 PDFBibTeX XMLCite \textit{S. Dudoit} et al., Stat. Sci. 18, No. 1, 71--103 (2003; Zbl 1048.62099) Full Text: DOI
Keles, Sunduz; Van der Laan, Mark L.; Dudoit, Sandrine; Xing, Biao; Eisen, Michael B. Supervised detection of regulatory motifs in DNA sequences. (English) Zbl 1038.92017 Stat. Appl. Genet. Mol. Biol. 2, No. 1, Article 5 (2003). MSC: 92C40 62P10 PDFBibTeX XMLCite \textit{S. Keles} et al., Stat. Appl. Genet. Mol. Biol. 2, No. 1, Article 5 (2003; Zbl 1038.92017) Full Text: DOI Link Link
Ge, Yongchao; Dudoit, Sandrine; Speed, Terence P. Resampling-based multiple testing for microarray data analysis (With comments). (English) Zbl 1056.62117 Test 12, No. 1, 1-77 (2003). MSC: 62P10 62G09 62J15 65C60 PDFBibTeX XMLCite \textit{Y. Ge} et al., Test 12, No. 1, 1--77 (2003; Zbl 1056.62117) Full Text: DOI
Dudoit, Sandrine; Fridlyand, Jane; Speed, Terence P. Comparison of discrimination methods for the classification of tumors using gene expression data. (English) Zbl 1073.62576 J. Am. Stat. Assoc. 97, No. 457, 77-87 (2002). MSC: 62P10 62H30 92C50 92C40 PDFBibTeX XMLCite \textit{S. Dudoit} et al., J. Am. Stat. Assoc. 97, No. 457, 77--87 (2002; Zbl 1073.62576) Full Text: DOI
Dudoit, Sandrine; Yang, Yee Hwa; Callow, Matthew J.; Speed, Terence P. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. (English) Zbl 1004.62088 Stat. Sin. 12, No. 1, 111-139 (2002). MSC: 62P10 62G10 92C40 92D10 PDFBibTeX XMLCite \textit{S. Dudoit} et al., Stat. Sin. 12, No. 1, 111--139 (2002; Zbl 1004.62088)
Dudoit, Sandrine; Speed, Terence P. A score test for the linkage analysis of qualitative and quantitative traits based on identity by descent data from sib-pairs. (English) Zbl 1110.62337 Biostatistics 1, No. 1, 1-26 (2000). MSC: 62P10 92D10 PDFBibTeX XMLCite \textit{S. Dudoit} and \textit{T. P. Speed}, Biostatistics 1, No. 1, 1--26 (2000; Zbl 1110.62337) Full Text: DOI
Dudoit, Sandrine; Speed, Terence P. A score test for linkage using identity by descent data from sibships. (English) Zbl 0957.62101 Ann. Stat. 27, No. 3, 943-986 (1999). MSC: 62P10 62F03 60J20 15A18 05C30 05C90 92D10 PDFBibTeX XMLCite \textit{S. Dudoit} and \textit{T. P. Speed}, Ann. Stat. 27, No. 3, 943--986 (1999; Zbl 0957.62101) Full Text: DOI
Dudoit, Sandrine; Speed, Terence P. Triangle constraints for sib-pair identity by descent probabilities under a general multilocus model for disease susceptibility. (English) Zbl 0954.92018 Halloran, Elizabeth M. (ed.) et al., Statistics in genetics. New York, NY: Springer. IMA Vol. Math. Appl. 112, 181-221 (1999). Reviewer: S.R.Wilson (Canberra) MSC: 92D10 62P10 92D20 PDFBibTeX XMLCite \textit{S. Dudoit} and \textit{T. P. Speed}, IMA Vol. Math. Appl. 112, 181--221 (1999; Zbl 0954.92018)