Ciocchetta, Federica The BlenX language with biological transactions. (English) Zbl 1241.92026 Priami, Corrado (ed.), Transactions on Computational Systems Biology IX. Berlin: Springer (ISBN 978-3-540-88764-5/pbk). Lecture Notes in Computer Science 5121. Lecture Notes in Bioinformatics. Journal Subline, 114-152 (2008). Summary: An extension of the BlenX language with biological transactions, called TBlenX, is presented. The aim of this extension is to model a sequence of elementary actions as if it were atomic. This extension is useful when we need to specify multi-reactant multi-product reactions or when we use a sequence of actions to represent a biological interaction. Some properties of these transactions are discussed and some examples are reported to illustrate our extension.For the entire collection see [Zbl 1167.92303]. Cited in 1 Document MSC: 92C42 Systems biology, networks 68W99 Algorithms in computer science Keywords:systems biology; process algebras; multiple-reactants; multiple-product reactions Software:Bio-PEPA; BlenX PDF BibTeX XML Cite \textit{F. Ciocchetta}, Lect. Notes Comput. Sci. 5121, 114--152 (2008; Zbl 1241.92026) Full Text: DOI