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The BlenX language with biological transactions. (English) Zbl 1241.92026
Priami, Corrado (ed.), Transactions on Computational Systems Biology IX. Berlin: Springer (ISBN 978-3-540-88764-5/pbk). Lecture Notes in Computer Science 5121. Lecture Notes in Bioinformatics. Journal Subline, 114-152 (2008).
Summary: An extension of the BlenX language with biological transactions, called TBlenX, is presented. The aim of this extension is to model a sequence of elementary actions as if it were atomic. This extension is useful when we need to specify multi-reactant multi-product reactions or when we use a sequence of actions to represent a biological interaction. Some properties of these transactions are discussed and some examples are reported to illustrate our extension.
For the entire collection see [Zbl 1167.92303].

MSC:
92C42 Systems biology, networks
68W99 Algorithms in computer science
Software:
Bio-PEPA; BlenX
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