zbMATH — the first resource for mathematics

Preface: Petri nets for systems and synthetic biology. (English) Zbl 1217.68151
68Q85 Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.)
92C42 Systems biology, networks
Full Text: DOI
[1] Ajmone Marsan M, Balbo G, Conte G, Donatelli S, Franceschinis G (1995) Modelling with generalized stochastic Petri nets. Wiley series in parallel computing. 2nd edn. Wiley, Newyork · Zbl 0843.68080
[2] Baldan P, Cocco N, Marin A, Simeoni M (2010) Petri nets for modelling metabolic pathways: a survey. J Nat Comput 9:955–989 · Zbl 1206.68209
[3] Chaouiya C (2007) Petri net modelling of biological networks. Brief in Bioinform 8(4):210–219
[4] David R, Alla H (2005) Discrete, continuous, and hybrid Petri nets. Springer, Berlin · Zbl 1074.93002
[5] Doi A, Drath R, Nagaska M, Matsuno H, Miyano S (1999) Protein dynamics observations of Lambda-Phage by hybrid Petri net. Genome Inform 10:217–218
[6] Heiner M, Gilbert D, Donaldson R (2008) Petri nets in systems and synthetic biology. In: Schools on formal methods (SFM), LNCS, vol 5016. Springer, Heidelberg, pp 215–264
[7] Heiner M, Lehrack S, Gilbert D, Marwan W (2009a) Extended stochastic Petri nets for model-based design of Wetlab experiments. transactions on computational systems biology XI. Springer, Heidelberg, pp 138–163 · Zbl 1260.68268
[8] Heiner M, Schwarick M, Tovchigrechko A (2009b) DSSZ-MC–a tool for symbolic analysis of extended Petri nets. In: Proceedings of the PETRI NETS 2009. LNCS, vol 5606. Springer, pp 323–332, June
[9] Herajy M, Heiner M (2010) Hybrid Petri Nets for modelling of hybrid biochemical interactions. In: Proceedings of the 17th German workshop on algorithms and tools for Petri nets (AWPN 2010). CEUR workshop proceedings, vol 643, pp 66–79. CEUR-WS.org, October
[10] Merlin PM (1974) A study of the recoverability of computing systems. PhD Thesis, University of California, Irvine 1974. Available from University Microfilms, Ann Arbor, No. 75–11026
[11] Valk R (1978) Self-modifying nets, a natural extension of Petri nets. In: LNCS, automata, languages and programming, vol 62, pp 464–476 · Zbl 0415.68025
This reference list is based on information provided by the publisher or from digital mathematics libraries. Its items are heuristically matched to zbMATH identifiers and may contain data conversion errors. It attempts to reflect the references listed in the original paper as accurately as possible without claiming the completeness or perfect precision of the matching.