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Inferring large graphs using \(\ell_1\)-penalized likelihood. (English) Zbl 1384.62177
Stat. Comput. 28, No. 4, 905-921 (2018); correction ibid. 28, No. 6, 1231 (2018).
Summary: We address the issue of recovering the structure of large sparse directed acyclic graphs from noisy observations of the system. We propose a novel procedure based on a specific formulation of the \(\ell_1\)-norm regularized maximum likelihood, which decomposes the graph estimation into two optimization sub-problems: topological structure and node order learning. We provide convergence inequalities for the graph estimator, as well as an algorithm to solve the induced optimization problem, in the form of a convex program embedded in a genetic algorithm. We apply our method to various data sets (including data from the DREAM4 challenge) and show that it compares favorably to state-of-the-art methods. This algorithm is available on CRAN as the R package GADAG.

62H12 Estimation in multivariate analysis
62J05 Linear regression; mixed models
62J07 Ridge regression; shrinkage estimators (Lasso)
68T05 Learning and adaptive systems in artificial intelligence
90C90 Applications of mathematical programming
Full Text: DOI
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