High-throughput data analysis in behavior genetics. (English) Zbl 1194.62120

Sakov, Anat; Golani, Ilan; Lipkind, Dina; Benjamini, Yoav

Ann. Appl. Stat. 4, No. 2, 743-763 (2010).

Summary: In recent years, a growing need has arisen in different fields for the development of computational systems for automated analysis of large amounts of data (high-throughput). Dealing with nonstandard noise structure and outliers, that could have been detected and corrected in manual analysis, must now be built into the system with the aid of robust methods. We discuss such problems and present insights and solutions in the context of behavior genetics, where data consists of a time series of locations of a mouse in a circular arena. In order to estimate the location, velocity and acceleration of the mouse, and identify stops, we use a nonstandard mix of robust and resistant methods: LOWESS and repeated running median. In addition, we argue that protection against small deviations from experimental protocols can be handled automatically using statistical methods. In our case, it is of biological interest to measure a rodent’s distance from the arena’s wall, but this measure is corrupted if the arena is not a perfect circle, as required in the protocol. The problem is addressed by estimating robustly the actual boundary of the arena and its center using a nonparametric regression quantile of the behavioral data, with the aid of a fast algorithm developed for that purpose.

MSC:

62P10	Applications of statistics to biology and medical sciences; meta analysis
92D10	Genetics and epigenetics
62M10	Time series, auto-correlation, regression, etc. in statistics (GARCH)

Keywords:

robustness; LOWESS; path data; behavior genetics; outliers; regression quantile; running median; boundary estimation; center estimation

Software:

EthoVision; fda (R)

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