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17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. (English) Zbl 1372.68022
LIPIcs – Leibniz International Proceedings in Informatics 88. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-95977-050-7). xiii, 27 articles, not consecutively paged, electronic only, open access (2017).

Show indexed articles as search result.

The articles of this volume will be reviewed individually. For the preceding workshop see [Zbl 1343.68008].
Indexed articles:
Alipanahi, Bahar; Salmela, Leena; Puglisi, Simon J.; Muggli, Martin; Boucher, Christina, Disentangled long-read de Bruijn graphs via optical maps, Article 1, 14 p. [Zbl 1443.92132]
Bayzid, Md. Shamsuzzoha; Warnow, Tandy, Gene tree parsimony for incomplete gene trees, Article 2, 13 p. [Zbl 1443.92117]
Brubach, Brian; Ghurye, Jay; Pop, Mihai; Srinivasan, Aravind, Better greedy sequence clustering with fast banded alignment, Article 3, 13 p. [Zbl 1443.92136]
Almirantis, Yannis; Charalampopoulos, Panagiotis; Gao, Jia; Iliopoulos, Costas S.; Mohamed, Manal; Pissis, Solon P.; Polychronopoulos, Dimitris, Optimal computation of overabundant words, Article 4, 14 p. [Zbl 1443.92133]
Ciach, Michał Aleksander; Muszewska, Anna; Górecki, Paweł, Detecting locus acquisition events in gene trees, Article 5, 13 p. [Zbl 1443.92119]
Bayegan, Amir H.; Clote, Peter, An IP algorithm for RNA folding trajectories, Article 6, 16 p. [Zbl 1443.92135]
Girotto, Samuele; Comin, Matteo; Pizzi, Cinzia, Fast spaced seed hashing, Article 7, 14 p. [Zbl 1443.92138]
El-Mabrouk, Nadia; Ouangraoua, Aïda, A general framework for gene tree correction based on duplication-loss reconciliation, Article 8, 14 p. [Zbl 1443.92128]
Crochemore, Maxime; Francisco, Alexandre P.; Pissis, Solon P.; Vaz, Cátia, Towards distance-based phylogenetic inference in average-case linear-time, Article 9, 14 p. [Zbl 1443.92127]
Gunady, Mohamed K.; Cornwell, Steffen; Mount, Stephen M.; Bravo, Héctor Corrada, Yanagi: transcript segment library construction for RNA-seq quantification, Article 10, 14 p. [Zbl 1443.92139]
Hu, Chenyue W.; Li, Hanyang; Qutub, Amina A., Shrinkage clustering: a fast and size-constrained algorithm for biomedical applications, Article 11, 13 p. [Zbl 1443.92100]
Jabbari, Hosna; Wark, Ian; Montemagno, Carlo; Will, Sebastian, Sparsification enables predicting kissing hairpin pseudoknot structures of long RNAs in practice, Article 12, 13 p. [Zbl 1443.92140]
Kim, Jongkyu; Reinert, Knut, Vaquita: fast and accurate identification of structural variation using combined evidence, Article 13, 14 p. [Zbl 1443.92141]
Abramova, Anastasiia; Korobeynikov, Anton, Assessing the significance of peptide spectrum match scores, Article 14, 11 p. [Zbl 1443.92131]
Mao, Shunfu; Mohajer, Soheil; Ramachandran, Kannan; Tse, David; Kannan, Sreeram, abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation, Article 15, 14 p. [Zbl 1443.92143]
Nikumbh, Sarvesh; Ebert, Peter; Pfeifer, Nico, All fingers are not the same: handling variable-length sequences in a discriminative setting using conformal multi-instance kernels, Article 16, 14 p. [Zbl 1443.92144]
Nøjgaard, Nikolai; Geiß, Manuela; Merkle, Daniel; Stadler, Peter F.; Wieseke, Nicolas; Hellmuth, Marc, Forbidden time travel: characterization of time-consistent tree reconciliation maps, Article 17, 12 p. [Zbl 1443.92122]
Almodaresi, Fatemeh; Pandey, Prashant; Patro, Rob, Rainbowfish: a succinct colored de Bruijn graph representation, Article 18, 15 p. [Zbl 1436.92008]
Polishko, Anton; Hasan, Md. Abid; Pan, Weihua; Bunnik, Evelien M.; Le Roch, Karine; Lonardi, Stefano, ThIEF: finding genome-wide trajectories of epigenetics marks, Article 19, 16 p. [Zbl 1443.92123]
Procházka, Petr; Holub, Jan, Byte-aligned pattern matching in encoded genomic sequences, Article 20, 13 p. [Zbl 1443.92145]
Quedenfeld, Jens; Rahmann, Sven, Analysis of min-hashing for variant tolerant DNA read mapping, Article 21, 13 p. [Zbl 1443.92146]
Ardakany, Abbas Roayaei; Lonardi, Stefano, Efficient and accurate detection of topologically associating domains from contact maps, Article 22, 11 p. [Zbl 1443.92134]
Shah, Nidhi; Altschul, Stephen F.; Pop, Mihai, Outlier detection in BLAST hits, Article 23, 11 p. [Zbl 1443.92046]
Simonaitis, Pijus; Swenson, Krister M., Finding local genome rearrangements, Article 24, 13 p. [Zbl 1443.92124]
Toivonen, Jarkko; Taipale, Jussi; Ukkonen, Esko, Seed-driven learning of position probability matrices from large sequence sets, Article 25, 13 p. [Zbl 1443.92147]
Frank, Yves; Hruz, Tomas; Tschager, Thomas; Venzin, Valentin, Improved de novo peptide sequencing using LC retention time information, Article 26, 17 p. [Zbl 1443.92137]
Christensen, Sarah; Molloy, Erin K.; Vachaspati, Pranjal; Warnow, Tandy, Optimal completion of incomplete gene trees in polynomial time using OCTAL, Article 27, 14 p. [Zbl 1443.92118]

MSC:
68-06 Proceedings, conferences, collections, etc. pertaining to computer science
92-06 Proceedings, conferences, collections, etc. pertaining to biology
92-08 Computational methods for problems pertaining to biology
00B25 Proceedings of conferences of miscellaneous specific interest
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