Huo, Yanhao; Xin, Lihui; Kang, Chuanze; Wang, Minghui; Ma, Qin; Yu, Bin SGL-SVM: a novel method for tumor classification via support vector machine with sparse group lasso. (English) Zbl 1429.92057 J. Theor. Biol. 486, Article ID 110098, 13 p. (2020). MSC: 92C32 62P10 92C40 PDFBibTeX XMLCite \textit{Y. Huo} et al., J. Theor. Biol. 486, Article ID 110098, 13 p. (2020; Zbl 1429.92057) Full Text: DOI
Pan, Yi; Wang, Shiyuan; Zhang, Qi; Lu, Qianzi; Su, Dongqing; Zuo, Yongchun; Yang, Lei Analysis and prediction of animal toxins by various Chou’s pseudo components and reduced amino acid compositions. (English) Zbl 1406.92205 J. Theor. Biol. 462, 221-229 (2019). MSC: 92C40 68T05 PDFBibTeX XMLCite \textit{Y. Pan} et al., J. Theor. Biol. 462, 221--229 (2019; Zbl 1406.92205) Full Text: DOI
Jia, Jianhua; Li, Xiaoyan; Qiu, Wangren; Xiao, Xuan; Chou, Kuo-Chen iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC. (English) Zbl 1406.92189 J. Theor. Biol. 460, 195-203 (2019). MSC: 92C40 92D20 68T05 62P10 92-08 PDFBibTeX XMLCite \textit{J. Jia} et al., J. Theor. Biol. 460, 195--203 (2019; Zbl 1406.92189) Full Text: DOI
Kakade, Aishwarya; Kumari, Baby; Dholaniya, Pankaj Singh Feature selection using logistic regression in case-control DNA methylation data of Parkinson’s disease: a comparative study. (English) Zbl 1406.92191 J. Theor. Biol. 457, 14-18 (2018). MSC: 92C40 92C20 62P10 62H25 62J02 PDFBibTeX XMLCite \textit{A. Kakade} et al., J. Theor. Biol. 457, 14--18 (2018; Zbl 1406.92191) Full Text: DOI
Mei, Juan; Fu, Yi; Zhao, Ji Analysis and prediction of ion channel inhibitors by using feature selection and Chou’s general pseudo amino acid composition. (English) Zbl 1406.92198 J. Theor. Biol. 456, 41-48 (2018). MSC: 92C40 62F40 62P10 PDFBibTeX XMLCite \textit{J. Mei} et al., J. Theor. Biol. 456, 41--48 (2018; Zbl 1406.92198) Full Text: DOI
Arif, Muhammad; Hayat, Maqsood; Jan, Zahoor IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou’s pseudo amino acid composition. (English) Zbl 1397.92180 J. Theor. Biol. 442, 11-21 (2018). MSC: 92C40 92D20 92-08 PDFBibTeX XMLCite \textit{M. Arif} et al., J. Theor. Biol. 442, 11--21 (2018; Zbl 1397.92180) Full Text: DOI
Jia, Cangzhi; Yang, Qing; Zou, Quan NucPosPred: predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC. (English) Zbl 1397.92010 J. Theor. Biol. 450, 15-21 (2018). MSC: 92-08 92C40 PDFBibTeX XMLCite \textit{C. Jia} et al., J. Theor. Biol. 450, 15--21 (2018; Zbl 1397.92010) Full Text: DOI
Khan, Muslim; Hayat, Maqsood; Khan, Sher Afzal; Ahmad, Saeed; Iqbal, Nadeem Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins. (English) Zbl 1394.92002 J. Theor. Biol. 435, 116-124 (2017). MSC: 92-08 92C40 PDFBibTeX XMLCite \textit{M. Khan} et al., J. Theor. Biol. 435, 116--124 (2017; Zbl 1394.92002) Full Text: DOI
Jiao, Xiong; Ranganathan, Shoba Prediction of interface residue based on the features of residue interaction network. (English) Zbl 1393.92011 J. Theor. Biol. 432, 49-54 (2017). MSC: 92C40 92-08 PDFBibTeX XMLCite \textit{X. Jiao} and \textit{S. Ranganathan}, J. Theor. Biol. 432, 49--54 (2017; Zbl 1393.92011) Full Text: DOI
Ali, Farman; Hayat, Maqsood Machine learning approaches for discrimination of extracellular matrix proteins using hybrid feature space. (English) Zbl 1343.92007 J. Theor. Biol. 403, 30-37 (2016). MSC: 92B15 62P10 92C40 PDFBibTeX XMLCite \textit{F. Ali} and \textit{M. Hayat}, J. Theor. Biol. 403, 30--37 (2016; Zbl 1343.92007) Full Text: DOI
Jia, Jianhua; Liu, Zi; Xiao, Xuan; Liu, Bingxiang; Chou, Kuo-Chen pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. (English) Zbl 1343.92153 J. Theor. Biol. 394, 223-230 (2016). MSC: 92C40 92D20 92-04 PDFBibTeX XMLCite \textit{J. Jia} et al., J. Theor. Biol. 394, 223--230 (2016; Zbl 1343.92153) Full Text: DOI
Fernandez-Lozano, Carlos; Cuiñas, Rubén F.; Seoane, José A.; Fernández-Blanco, Enrique; Dorado, Julian; Munteanu, Cristian R. Classification of signaling proteins based on molecular star graph descriptors using machine learning models. (English) Zbl 1343.92011 J. Theor. Biol. 384, 50-58 (2015). MSC: 92B15 92C40 PDFBibTeX XMLCite \textit{C. Fernandez-Lozano} et al., J. Theor. Biol. 384, 50--58 (2015; Zbl 1343.92011) Full Text: DOI arXiv
Golzari, Fahimeh; Jalili, Saeed VR-BFDT: a variance reduction based binary fuzzy decision tree induction method for protein function prediction. (English) Zbl 1341.92052 J. Theor. Biol. 377, 10-24 (2015). MSC: 92D20 68T05 PDFBibTeX XMLCite \textit{F. Golzari} and \textit{S. Jalili}, J. Theor. Biol. 377, 10--24 (2015; Zbl 1341.92052) Full Text: DOI
Lin, Thy-Hou; Tsai, Tsung-Lin Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM. (English) Zbl 1412.92094 J. Theor. Biol. 356, 85-97 (2014). MSC: 92C40 68T05 PDFBibTeX XMLCite \textit{T.-H. Lin} and \textit{T.-L. Tsai}, J. Theor. Biol. 356, 85--97 (2014; Zbl 1412.92094) Full Text: DOI
Fernandez-Lozano, Carlos; Gestal, Marcos; González-Díaz, Humberto; Dorado, Julián; Pazos, Alejandro; Munteanu, Cristian R. Markov mean properties for cell death-related protein classification. (English) Zbl 1412.92087 J. Theor. Biol. 349, 12-21 (2014). MSC: 92C40 92-08 PDFBibTeX XMLCite \textit{C. Fernandez-Lozano} et al., J. Theor. Biol. 349, 12--21 (2014; Zbl 1412.92087) Full Text: DOI Link
Mahalingam, Rajasekaran; Peng, Hung-Pin; Yang, An-Suei Prediction of FMN-binding residues with three-dimensional probability distributions of interacting atoms on protein surfaces. (English) Zbl 1411.92103 J. Theor. Biol. 343, 154-161 (2014). MSC: 92C40 92-08 PDFBibTeX XMLCite \textit{R. Mahalingam} et al., J. Theor. Biol. 343, 154--161 (2014; Zbl 1411.92103) Full Text: DOI
Ma, Xin; Sun, Xiao Sequence-based predictor of ATP-binding residues using random forest and mrmr-IFS feature selection. (English) Zbl 1343.92014 J. Theor. Biol. 360, 59-66 (2014). MSC: 92B15 92C40 92-08 PDFBibTeX XMLCite \textit{X. Ma} and \textit{X. Sun}, J. Theor. Biol. 360, 59--66 (2014; Zbl 1343.92014) Full Text: DOI
McGillen, Jessica B.; Kelly, Catherine J.; Martínez-González, Alicia; Martin, Natasha K.; Gaffney, Eamonn A.; Maini, Philip K.; Pérez-García, Víctor M. Glucose-lactate metabolic cooperation in cancer: insights from a spatial mathematical model and implications for targeted therapy. (English) Zbl 1303.92032 J. Theor. Biol. 361, 190-203 (2014). MSC: 92C40 92C50 PDFBibTeX XMLCite \textit{J. B. McGillen} et al., J. Theor. Biol. 361, 190--203 (2014; Zbl 1303.92032) Full Text: DOI
Jahandideh, Samad; Mahdavi, Abbas RFCRYS: sequence-based protein crystallization propensity prediction by means of random forest. (English) Zbl 1397.92530 J. Theor. Biol. 306, 115-119 (2012). MSC: 92D20 62P10 68T05 PDFBibTeX XMLCite \textit{S. Jahandideh} and \textit{A. Mahdavi}, J. Theor. Biol. 306, 115--119 (2012; Zbl 1397.92530) Full Text: DOI
Jahandideh, Samad; Srinivasasainagendra, Vinodh; Zhi, Degui Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection. (English) Zbl 1337.92062 J. Theor. Biol. 312, 65-75 (2012). MSC: 92C40 92D20 PDFBibTeX XMLCite \textit{S. Jahandideh} et al., J. Theor. Biol. 312, 65--75 (2012; Zbl 1337.92062) Full Text: DOI Link
Qiu, Zhijun; Wang, Xicheng Prediction of protein-protein interaction sites using patch-based residue characterization. (English) Zbl 1307.92088 J. Theor. Biol. 293, 143-150 (2012). MSC: 92C40 PDFBibTeX XMLCite \textit{Z. Qiu} and \textit{X. Wang}, J. Theor. Biol. 293, 143--150 (2012; Zbl 1307.92088) Full Text: DOI
Agüero-Chapin, Guillermin; de la Riva, Gustavo A.; Molina-Ruiz, Reinaldo; Sánchez-Rodríguez, Aminael; Pérez-Machado, Gisselle; Vasconcelos, Vítor; Antunes, Agostinho Non-linear models based on simple topological indices to identify RNase III protein members. (English) Zbl 1405.92210 J. Theor. Biol. 273, 167-178 (2011). MSC: 92D20 68T05 62H30 62P10 PDFBibTeX XMLCite \textit{G. Agüero-Chapin} et al., J. Theor. Biol. 273, 167--178 (2011; Zbl 1405.92210) Full Text: DOI HAL
Masso, Majid; Vaisman, Iosif I. Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms. (English) Zbl 1407.92082 J. Theor. Biol. 266, No. 4, 560-568 (2010). MSC: 92D10 92D20 68T05 62P10 PDFBibTeX XMLCite \textit{M. Masso} and \textit{I. I. Vaisman}, J. Theor. Biol. 266, No. 4, 560--568 (2010; Zbl 1407.92082) Full Text: DOI
Caliebe, Amke; Jochens, Arne; Krawczak, Michael; Rösler, Uwe A Markov chain description of the stepwise mutation model: local and global behaviour of the allele process. (English) Zbl 1407.92088 J. Theor. Biol. 266, No. 2, 336-342 (2010). MSC: 92D15 92D10 60J20 PDFBibTeX XMLCite \textit{A. Caliebe} et al., J. Theor. Biol. 266, No. 2, 336--342 (2010; Zbl 1407.92088) Full Text: DOI HAL
Ren, Yanrong; Chen, Xiaolin; Li, Xiaobo; Lai, Han; Wang, Qiang; Zhou, Peng; Chen, Guoping Quantitative prediction of the thermal motion and intrinsic disorder of protein cofactors in crystalline state: a case study on halide anions. (English) Zbl 1407.92050 J. Theor. Biol. 266, No. 2, 291-298 (2010). MSC: 92C40 68T05 PDFBibTeX XMLCite \textit{Y. Ren} et al., J. Theor. Biol. 266, No. 2, 291--298 (2010; Zbl 1407.92050) Full Text: DOI
Wedge, David C.; Rowe, William; Kell, Douglas B.; Knowles, Joshua In silico modelling of directed evolution: implications for experimental design and stepwise evolution. (English) Zbl 1400.92384 J. Theor. Biol. 257, No. 1, 131-141 (2009). MSC: 92D15 68T20 68W05 PDFBibTeX XMLCite \textit{D. C. Wedge} et al., J. Theor. Biol. 257, No. 1, 131--141 (2009; Zbl 1400.92384) Full Text: DOI
Cai, Yu-Dong; Feng, Kai-Yan; Lu, Wen-Cong; Chou, Kuo-Chen Using LogitBoost classifier to predict protein structural classes. (English) Zbl 1445.92220 J. Theor. Biol. 238, No. 1, 172-176 (2006). MSC: 92D20 92-04 PDFBibTeX XMLCite \textit{Y.-D. Cai} et al., J. Theor. Biol. 238, No. 1, 172--176 (2006; Zbl 1445.92220) Full Text: DOI