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Found 35 Documents (Results 1–35)

Algorithms for indexing highly similar DNA sequences. (English) Zbl 1457.68332

Elloumi, Mourad (ed.), Algorithms for next-generation sequencing data. Techniques, approaches, and applications. Cham: Springer. 3-39 (2017).
MSC:  68W32 92D20
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Byte-aligned pattern matching in encoded genomic sequences. (English) Zbl 1443.92145

Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 20, 13 p. (2017).
MSC:  92D20 92-04
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Self-indexing based on LZ77. (English) Zbl 1339.68334

Giancarlo, Raffaele (ed.) et al., Combinatorial pattern matching. 22nd annual symposium, CPM 2011, Palermo, Italy, June 27–29, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-21457-8/pbk). Lecture Notes in Computer Science 6661, 41-54 (2011).
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On the structure of consistent partitions of substring set of a word. (English) Zbl 1248.68176

Deng, Xiaotie (ed.) et al., Frontiers in algorithmics. Third international workshop, FAW 2009, Hefei, China, June 20–23, 2009. Proceedings. Berlin: Springer (ISBN 978-3-642-02269-2/pbk). Lecture Notes in Computer Science 5598, 326-335 (2009).
MSC:  68P05 68R15
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Linear time suffix array construction using D-critical substrings. (English) Zbl 1247.68071

Kucherov, Gregory (ed.) et al., Combinatorial pattern matching. 20th annual symposium, CPM 2009, Lille, France, June 22–24, 2009. Proceedings. Berlin: Springer (ISBN 978-3-642-02440-5/pbk). Lecture Notes in Computer Science 5577, 54-67 (2009).
MSC:  68P10 68W32
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