Albi, Giacomo; Chignola, Roberto; Ferrarese, Federica Efficient ensemble stochastic algorithms for agent-based models with spatial predator-prey dynamics. (English) Zbl 07538464 Math. Comput. Simul. 199, 317-340 (2022). MSC: 92-XX 91-XX PDFBibTeX XMLCite \textit{G. Albi} et al., Math. Comput. Simul. 199, 317--340 (2022; Zbl 07538464) Full Text: DOI arXiv
Erban, Radek Coarse-graining molecular dynamics: stochastic models with non-Gaussian force distributions. (English) Zbl 1434.82064 J. Math. Biol. 80, No. 1-2, 457-479 (2020). MSC: 82C31 92C40 60H10 65C35 60G15 60J65 82M37 PDFBibTeX XMLCite \textit{R. Erban}, J. Math. Biol. 80, No. 1--2, 457--479 (2020; Zbl 1434.82064) Full Text: DOI arXiv
Sayyidmousavi, Alireza; Rohlf, Katrin Stochastic simulations of the Schnakenberg model with spatial inhomogeneities using reactive multiparticle collision dynamics. (English) Zbl 1486.37044 AIMS Math. 4, No. 6, 1805-1823 (2019). MSC: 37M05 65C35 82C05 92D25 92B05 PDFBibTeX XMLCite \textit{A. Sayyidmousavi} and \textit{K. Rohlf}, AIMS Math. 4, No. 6, 1805--1823 (2019; Zbl 1486.37044) Full Text: DOI
Martinson, W. Duncan; Byrne, Helen M.; Maini, Philip K. Multiscale modeling and simulation of traveling waves in biology: a review. (English) Zbl 1441.92004 Rend. Mat. Appl., VII. Ser. 40, No. 3-4, 191-216 (2019). MSC: 92B05 35Q92 35C07 65M06 92-02 PDFBibTeX XMLCite \textit{W. D. Martinson} et al., Rend. Mat. Appl., VII. Ser. 40, No. 3--4, 191--216 (2019; Zbl 1441.92004) Full Text: Link
Sayyidmousavi, Alireza; Rohlf, Katrin; Ilie, Silvana A hybrid method for micro-mesoscopic stochastic simulation of reaction-diffusion systems. (English) Zbl 1425.92080 Math. Biosci. 312, 23-32 (2019). MSC: 92C40 60H30 PDFBibTeX XMLCite \textit{A. Sayyidmousavi} et al., Math. Biosci. 312, 23--32 (2019; Zbl 1425.92080) Full Text: DOI
Kang, Hye-Won; Erban, Radek Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations. (English) Zbl 1422.92055 Bull. Math. Biol. 81, No. 8, 3185-3213 (2019). MSC: 92C42 92C45 60J28 35R60 65C40 92-08 PDFBibTeX XMLCite \textit{H.-W. Kang} and \textit{R. Erban}, Bull. Math. Biol. 81, No. 8, 3185--3213 (2019; Zbl 1422.92055) Full Text: DOI
Engblom, Stefan; Hellander, Andreas; Lötstedt, Per Multiscale simulation of stochastic reaction-diffusion networks. (English) Zbl 1401.92091 Holcman, David (ed.), Stochastic processes, multiscale modeling, and numerical methods for computational cellular biology. Cham: Springer (ISBN 978-3-319-62626-0/hbk; 978-3-319-62627-7/ebook). 55-79 (2017). MSC: 92C45 35K57 92C42 PDFBibTeX XMLCite \textit{S. Engblom} et al., in: Stochastic processes, multiscale modeling, and numerical methods for computational cellular biology. Cham: Springer. 55--79 (2017; Zbl 1401.92091) Full Text: DOI
Dobramysl, Ulrich; Rüdiger, Sten; Erban, Radek Particle-based multiscale modeling of calcium puff dynamics. (English) Zbl 1352.65022 Multiscale Model. Simul. 14, No. 3, 997-1016 (2016). MSC: 65C35 92C42 PDFBibTeX XMLCite \textit{U. Dobramysl} et al., Multiscale Model. Simul. 14, No. 3, 997--1016 (2016; Zbl 1352.65022) Full Text: DOI arXiv