Williamson, Brian D.; Hughes, James P.; Willis, Amy D. A multiview model for relative and absolute microbial abundances. (English) Zbl 1520.62371 Biometrics 78, No. 3, 1181-1194 (2022). MSC: 62P10 PDFBibTeX XMLCite \textit{B. D. Williamson} et al., Biometrics 78, No. 3, 1181--1194 (2022; Zbl 1520.62371) Full Text: DOI OA License
Crook, Oliver M.; Lilley, Kathryn S.; Gatto, Laurent; Kirk, Paul D. W. Semi-supervised nonparametric Bayesian modelling of spatial proteomics. (English) Zbl 1498.62204 Ann. Appl. Stat. 16, No. 4, 2554-2576 (2022). MSC: 62P10 62F15 62H30 62-08 PDFBibTeX XMLCite \textit{O. M. Crook} et al., Ann. Appl. Stat. 16, No. 4, 2554--2576 (2022; Zbl 1498.62204) Full Text: DOI arXiv
Jeganathan, Pratheepa; Holmes, Susan P. A statistical perspective on the challenges in molecular microbial biology. (English) Zbl 07603058 J. Agric. Biol. Environ. Stat. 26, No. 2, 131-160 (2021). MSC: 62P12 PDFBibTeX XMLCite \textit{P. Jeganathan} and \textit{S. P. Holmes}, J. Agric. Biol. Environ. Stat. 26, No. 2, 131--160 (2021; Zbl 07603058) Full Text: DOI arXiv
Mohammed, Shariq; Bharath, Karthik; Kurtek, Sebastian; Rao, Arvind; Baladandayuthapani, Veerabhadran RADIOHEAD: radiogenomic analysis incorporating tumor heterogeneity in imaging through densities. (English) Zbl 1498.62245 Ann. Appl. Stat. 15, No. 4, 1808-1830 (2021). MSC: 62P10 62F15 62G08 62H25 92C55 PDFBibTeX XMLCite \textit{S. Mohammed} et al., Ann. Appl. Stat. 15, No. 4, 1808--1830 (2021; Zbl 1498.62245) Full Text: DOI arXiv
Mayrink, Vinícius Diniz; Gonçalves, Flávio B. Identifying atypically expressed chromosome regions using RNA-Seq data. (English) Zbl 1458.62261 Stat. Methods Appl. 29, No. 3, 619-649 (2020). MSC: 62P10 62F15 92D20 PDFBibTeX XMLCite \textit{V. D. Mayrink} and \textit{F. B. Gonçalves}, Stat. Methods Appl. 29, No. 3, 619--649 (2020; Zbl 1458.62261) Full Text: DOI arXiv
Madsen, Tobias; Świtnicki, Michał; Juul, Malene; Skou Pedersen, Jakob EBADIMEX: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples. (English) Zbl 1445.92115 Stat. Appl. Genet. Mol. Biol. 18, No. 6, Article ID 20180050, 23 p. (2019). MSC: 92C40 92C50 62P10 62F15 PDFBibTeX XMLCite \textit{T. Madsen} et al., Stat. Appl. Genet. Mol. Biol. 18, No. 6, Article ID 20180050, 23 p. (2019; Zbl 1445.92115) Full Text: DOI
de Campos, Luis M.; Cano, Andrés; Castellano, Javier G.; Moral, Serafín Combining gene expression data and prior knowledge for inferring gene regulatory networks via Bayesian networks using structural restrictions. (English) Zbl 1420.92019 Stat. Appl. Genet. Mol. Biol. 18, No. 3, Article ID 20180042, 14 p. (2019). MSC: 92C40 92C42 62P10 62F15 PDFBibTeX XMLCite \textit{L. M. de Campos} et al., Stat. Appl. Genet. Mol. Biol. 18, No. 3, Article ID 20180042, 14 p. (2019; Zbl 1420.92019) Full Text: DOI Link
Bhattacharjee, Atanu; Vishwakarma, Gajendra K. Time-course data prediction for repeatedly measured gene expression. (English) Zbl 1419.62310 Int. J. Biomath. 12, No. 4, Article ID 1950033, 16 p. (2019). MSC: 62P10 62N02 62H12 62F15 PDFBibTeX XMLCite \textit{A. Bhattacharjee} and \textit{G. K. Vishwakarma}, Int. J. Biomath. 12, No. 4, Article ID 1950033, 16 p. (2019; Zbl 1419.62310) Full Text: DOI
Chakraborty, Sounak; Lozano, Aurelie C. A graph Laplacian prior for Bayesian variable selection and grouping. (English) Zbl 1507.62024 Comput. Stat. Data Anal. 136, 72-91 (2019). MSC: 62-08 62F15 62J05 62P10 PDFBibTeX XMLCite \textit{S. Chakraborty} and \textit{A. C. Lozano}, Comput. Stat. Data Anal. 136, 72--91 (2019; Zbl 1507.62024) Full Text: DOI
Zhao, Lili; Wu, Weisheng; Feng, Dai; Jiang, Hui; Nguyen, Xuanlong Bayesian analysis of RNA-Seq data using a family of negative binomial models. (English) Zbl 1407.62414 Bayesian Anal. 13, No. 2, 411-436 (2018). MSC: 62P10 62F15 92D20 PDFBibTeX XMLCite \textit{L. Zhao} et al., Bayesian Anal. 13, No. 2, 411--436 (2018; Zbl 1407.62414) Full Text: DOI Euclid
Franks, Alexander M.; Markowetz, Florian; Airoldi, Edoardo M. Refining cellular pathway models using an ensemble of heterogeneous data sources. (English) Zbl 1405.62174 Ann. Appl. Stat. 12, No. 3, 1361-1384 (2018). MSC: 62P10 62F15 PDFBibTeX XMLCite \textit{A. M. Franks} et al., Ann. Appl. Stat. 12, No. 3, 1361--1384 (2018; Zbl 1405.62174) Full Text: DOI arXiv Euclid
Papastamoulis, Panagiotis; Rattray, Magnus Bayesian estimation of differential transcript usage from RNA-seq data. (English) Zbl 1396.92061 Stat. Appl. Genet. Mol. Biol. 16, No. 5-6, 367-386 (2017). MSC: 92D20 62P10 62F15 PDFBibTeX XMLCite \textit{P. Papastamoulis} and \textit{M. Rattray}, Stat. Appl. Genet. Mol. Biol. 16, No. 5--6, 367--386 (2017; Zbl 1396.92061) Full Text: DOI arXiv Link
Mathé, Ewy (ed.); Davis, Sean (ed.) Statistical genomics. Methods and protocols. (English) Zbl 1346.92003 Methods in Molecular Biology 1418. New York, NY: Humana Press/Springer (ISBN 978-1-4939-3576-5/hbk; 978-1-4939-3578-9/ebook). xi, 418 p. (2016). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-02 92B15 92D10 62P10 62B15 62F15 62K05 PDFBibTeX XMLCite \textit{E. Mathé} (ed.) and \textit{S. Davis} (ed.), Statistical genomics. Methods and protocols. New York, NY: Humana Press/Springer (2016; Zbl 1346.92003) Full Text: DOI
Chekouo, Thierry; Stingo, Francesco C.; Doecke, James D.; Do, Kim-Anh miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer. (English) Zbl 1390.62241 Biometrics 71, No. 2, 428-438 (2015). MSC: 62P10 62N05 62F15 PDFBibTeX XMLCite \textit{T. Chekouo} et al., Biometrics 71, No. 2, 428--438 (2015; Zbl 1390.62241) Full Text: DOI Link
Cui, Shiqi; Guha, Subharup; Ferreira, Marco A. R.; Tegge, Allison N. HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data. (English) Zbl 1454.62323 Ann. Appl. Stat. 9, No. 2, 901-925 (2015). MSC: 62P10 62F15 62M05 PDFBibTeX XMLCite \textit{S. Cui} et al., Ann. Appl. Stat. 9, No. 2, 901--925 (2015; Zbl 1454.62323) Full Text: DOI arXiv Euclid
Wang, Zhishi; He, Qiuling; Larget, Bret; Newton, Michael A. A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis. (English) Zbl 1454.62417 Ann. Appl. Stat. 9, No. 1, 225-246 (2015). MSC: 62P10 PDFBibTeX XMLCite \textit{Z. Wang} et al., Ann. Appl. Stat. 9, No. 1, 225--246 (2015; Zbl 1454.62417) Full Text: DOI arXiv Euclid
Mayrink, Vinicius D.; Lucas, Joseph E. Bayesian factor models for the detection of coherent patterns in gene expression data. (English) Zbl 1329.92089 Braz. J. Probab. Stat. 29, No. 1, 1-33 (2015). MSC: 92D10 62P10 62F15 PDFBibTeX XMLCite \textit{V. D. Mayrink} and \textit{J. E. Lucas}, Braz. J. Probab. Stat. 29, No. 1, 1--33 (2015; Zbl 1329.92089) Full Text: DOI Euclid
Datta, Somnath (ed.); Nettleton, Dan (ed.) [Bickel, Peter J.; Boley, Nathan; Brown, James Bentley; Chen, Mengjie; Chen, Yunshun; Chung, Dongjun; Collado Torres, Leonardo; Datta, Somnath; Datta, Susmita; Du, Ruofei; Dudoit, Sandrine; Fang, Zhide; Frazee, Alyssa C.; Ghosh, Debashis; Gill, Ryan S.; Girirajan, Santhosh; Hou, Lin; Hu, Yijuan; Huang, Haiyan; Jaffe, Andrew E.; Keleş, Sündüz; Langmead, Ben; Leek, Jeffrey T.; Li, Hongzhe; Liu, Peng; Lorenz, Douglas J.; Lun, Aaron T. L.; Mitra, Ritendranath; Müller, Peter; Nettleton, Dan; Ngai, John; Petersen, Ashley; Riebler, Andrea; Risso, Davide; Robinson, Mark D.; Salzman, Julia; Seshan, Venkatraman E.; Si, Yaqing; Smyth, Gordon K.; Speed, Terence P.; Sun, Wei; Tan, Kean Ming; van de Wiel, Mark A.; Witten, Daniela; Xiong, Hao; Zhang, Kui; Zhang, Qi; Zhao, Hongyu; Zhi, Degui] Statistical analysis of next generation sequencing data. (English) Zbl 1296.92001 Frontiers in Probability and the Statistical Sciences. Cham: Springer (ISBN 978-3-319-07211-1/hbk; 978-3-319-07212-8/ebook). xiv, 432 p. (2014). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-01 92-02 92-06 92-08 92C40 92D20 62P10 PDFBibTeX XMLCite \textit{S. Datta} (ed.) and \textit{D. Nettleton} (ed.), Statistical analysis of next generation sequencing data. Cham: Springer (2014; Zbl 1296.92001) Full Text: DOI
Peterson, Christine; Vannucci, Marina; Karakas, Cemal; Choi, William; Ma, Lihua; Maletic-Savatic, Mirjana Inferring metabolic networks using the Bayesian adaptive graphical Lasso with informative priors. (English) Zbl 1326.92028 Stat. Interface 6, No. 4, 547-558 (2013). MSC: 92C42 62A09 62P10 62F15 62J07 PDFBibTeX XMLCite \textit{C. Peterson} et al., Stat. Interface 6, No. 4, 547--558 (2013; Zbl 1326.92028) Full Text: DOI
Caron, François; Doucet, Arnaud; Gottardo, Raphael On-line changepoint detection and parameter estimation with application to genomic data. (English) Zbl 1322.62085 Stat. Comput. 22, No. 2, 579-595 (2012). MSC: 62F10 62L10 62F15 62P10 62M20 92D10 PDFBibTeX XMLCite \textit{F. Caron} et al., Stat. Comput. 22, No. 2, 579--595 (2012; Zbl 1322.62085) Full Text: DOI
Marín, J. M.; Rodríguez-Bernal, M. T. Multiple hypothesis testing and clustering with mixtures of non-central \(t\)-distributions applied in microarray data analysis. (English) Zbl 1242.62079 Comput. Stat. Data Anal. 56, No. 6, 1898-1907 (2012). MSC: 62J15 62P10 92C40 65C40 62F15 PDFBibTeX XMLCite \textit{J. M. Marín} and \textit{M. T. Rodríguez-Bernal}, Comput. Stat. Data Anal. 56, No. 6, 1898--1907 (2012; Zbl 1242.62079) Full Text: DOI
Stingo, Francesco C.; Chen, Yian A.; Tadesse, Mahlet G.; Vannucci, Marina Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes. (English) Zbl 1228.62150 Ann. Appl. Stat. 5, No. 3, 1978-2002 (2011). MSC: 62P10 92C40 62F15 65C40 62N01 PDFBibTeX XMLCite \textit{F. C. Stingo} et al., Ann. Appl. Stat. 5, No. 3, 1978--2002 (2011; Zbl 1228.62150) Full Text: DOI arXiv
Zhang, Xuekui; Robertson, Gordon; Krzywinski, Martin; Ning, Kaida; Droit, Arnaud; Jones, Steven; Gottardo, Raphael PICS: Probabilistic Inference for ChIP-seq. (English) Zbl 1216.62184 Biometrics 67, No. 1, 151-163 (2011). MSC: 62P10 62F15 92C40 65C60 PDFBibTeX XMLCite \textit{X. Zhang} et al., Biometrics 67, No. 1, 151--163 (2011; Zbl 1216.62184) Full Text: DOI arXiv
Bar, Haim; Booth, James; Schifano, Elizabeth; Wells, Martin T. Laplace approximated EM microarray analysis: an empirical Bayes approach for comparative microarray experiments. (English) Zbl 1329.62114 Stat. Sci. 25, No. 3, 388-407 (2010). MSC: 62F15 62H30 62F12 62J15 62P10 62K99 PDFBibTeX XMLCite \textit{H. Bar} et al., Stat. Sci. 25, No. 3, 388--407 (2010; Zbl 1329.62114) Full Text: DOI arXiv Euclid
Tai, Yu Chuan; Speed, Terence P. On gene ranking using replicated microarray time course data. (English) Zbl 1159.62081 Biometrics 65, No. 1, 40-51 (2009). MSC: 62P10 62F15 92D10 65C60 PDFBibTeX XMLCite \textit{Y. C. Tai} and \textit{T. P. Speed}, Biometrics 65, No. 1, 40--51 (2009; Zbl 1159.62081) Full Text: DOI
Nott, David J.; Yu, Zeming; Chan, Eva; Cotsapas, Chris; Cowley, Mark J.; Pulvers, Jeremy; Williams, Rohan; Little, Peter Hierarchical Bayes variable selection and microarray experiments. (English) Zbl 1118.62035 J. Multivariate Anal. 98, No. 4, 852-872 (2007). MSC: 62F15 62P10 62C12 62F07 65C40 92C40 PDFBibTeX XMLCite \textit{D. J. Nott} et al., J. Multivariate Anal. 98, No. 4, 852--872 (2007; Zbl 1118.62035) Full Text: DOI