Bonvicini, Simona; Ferrari, Margherita Maria On the minimum number of bond-edge types and tile types: an approach by edge-colorings of graphs. (English) Zbl 1435.05053 Discrete Appl. Math. 277, 1-13 (2020). MSC: 05C09 05C90 05C15 92D20 PDF BibTeX XML Cite \textit{S. Bonvicini} and \textit{M. M. Ferrari}, Discrete Appl. Math. 277, 1--13 (2020; Zbl 1435.05053) Full Text: DOI
Han, Yo-Sub; Kim, Hwee Ruleset optimization on isomorphic oritatami systems. (English) Zbl 1423.68169 Theor. Comput. Sci. 785, 128-139 (2019). MSC: 68Q05 92D20 PDF BibTeX XML Cite \textit{Y.-S. Han} and \textit{H. Kim}, Theor. Comput. Sci. 785, 128--139 (2019; Zbl 1423.68169) Full Text: DOI
Deng, Tao Configuration of DNA polyhedra of truncated tetrahedron, cuboctahedron, truncated octahedron. (English) Zbl 1412.92239 J. Theor. Biol. 472, 4-10 (2019). MSC: 92D20 PDF BibTeX XML Cite \textit{T. Deng}, J. Theor. Biol. 472, 4--10 (2019; Zbl 1412.92239) Full Text: DOI
Ellis-Monaghan, Joanna; Jonoska, Nataša; Pangborn, Greta Tile-based DNA nanostructures. Mathematical design and problem encoding. (English) Zbl 1409.92182 Robeva, Raina (ed.) et al., Algebraic and combinatorial computational biology. Amsterdam: Elsevier/Academic Press. Math. Sci. Eng., 35-60 (2019). MSC: 92D20 05C90 PDF BibTeX XML Cite \textit{J. Ellis-Monaghan} et al., in: Algebraic and combinatorial computational biology. Amsterdam: Elsevier/Academic Press. 35--60 (2019; Zbl 1409.92182) Full Text: DOI
Chalk, Cameron; Martinez, Eric; Schweller, Robert; Vega, Luis; Winslow, Andrew; Wylie, Tim Optimal staged self-assembly of linear assemblies. (English) Zbl 06958385 Stepney, Susan (ed.) et al., Unconventional computation and natural computation. 17th international conference, UCNC 2018, Fontainebleau, France, June 25–29, 2018. Proceedings. Cham: Springer (ISBN 978-3-319-92434-2/pbk; 978-3-319-92435-9/ebook). Lecture Notes in Computer Science 10867, 32-45 (2018). MSC: 68Q05 68Q10 PDF BibTeX XML Cite \textit{C. Chalk} et al., Lect. Notes Comput. Sci. 10867, 32--45 (2018; Zbl 06958385) Full Text: DOI
Ferrari, Margherita Maria; Cook, Anna; Houlihan, Alana; Rouleau, Rebecca; Seeman, Nadrian C.; Pangborn, Greta; Ellis-Monaghan, Joanna Design formalism for DNA self-assembly of polyhedral skeletons using rigid tiles. (English) Zbl 1390.92161 J. Math. Chem. 56, No. 5, 1365-1392 (2018). MSC: 92E10 92D20 PDF BibTeX XML Cite \textit{M. M. Ferrari} et al., J. Math. Chem. 56, No. 5, 1365--1392 (2018; Zbl 1390.92161) Full Text: DOI
Furcy, David; Summers, Scott M. Scaled pier fractals do not strictly self-assemble. (English) Zbl 1415.68083 Nat. Comput. 16, No. 2, 317-338 (2017). MSC: 68Q05 28A80 68Q10 PDF BibTeX XML Cite \textit{D. Furcy} and \textit{S. M. Summers}, Nat. Comput. 16, No. 2, 317--338 (2017; Zbl 1415.68083) Full Text: DOI
Seki, Shinnosuke; Winslow, Andrew The complexity of fixed-height patterned tile self-assembly. (English) Zbl 1380.68181 Int. J. Found. Comput. Sci. 28, No. 5, 465-482 (2017). MSC: 68Q05 68Q17 68W40 PDF BibTeX XML Cite \textit{S. Seki} and \textit{A. Winslow}, Int. J. Found. Comput. Sci. 28, No. 5, 465--482 (2017; Zbl 1380.68181) Full Text: DOI
Rogers, Trent A.; Seki, Shinnosuke Oritatami system; a survey and the impossibility of simple simulation at small delays. (English) Zbl 1382.92211 Fundam. Inform. 154, No. 1-4, 359-372 (2017). MSC: 92D20 68Q05 PDF BibTeX XML Cite \textit{T. A. Rogers} and \textit{S. Seki}, Fundam. Inform. 154, No. 1--4, 359--372 (2017; Zbl 1382.92211) Full Text: DOI
Kari, Lila; Simjour, Amirhossein Smart tile self-assembly and replication. (English) Zbl 1378.68041 Fundam. Inform. 154, No. 1-4, 239-260 (2017). MSC: 68Q05 68T40 PDF BibTeX XML Cite \textit{L. Kari} and \textit{A. Simjour}, Fundam. Inform. 154, No. 1--4, 239--260 (2017; Zbl 1378.68041) Full Text: DOI
Brenner, Michael P. Ideas about self assembly. (English) Zbl 1380.82010 Bowick, Mark J. (ed.) et al., Mathematics and materials. Lectures presented at the IAS/Park City Mathematics Institute (PCMI) Graduate Summer School, Park City, UT, USA, July 2014. Providence, RI: American Mathematical Society (AMS); Princeton, NJ: Institute for Advanced Study (IAS); Philadelphia, PA: Society for Industrial and Applied Mathematics (SIAM) (ISBN 978-1-4704-2919-5/hbk; 978-1-4704-3749-7/ebook). IAS/Park City Mathematics Series 23, 169-199 (2017). MSC: 82B03 82D60 92D20 82C31 97M50 PDF BibTeX XML Cite \textit{M. P. Brenner}, IAS/Park City Math. Ser. 23, 169--199 (2017; Zbl 1380.82010)
Meunier, Pierre-Étienne; Woods, Damien The non-cooperative tile assembly model is not intrinsically universal or capable of bounded Turing machine simulation. (English) Zbl 1370.68095 Hatami, Hamed (ed.) et al., Proceedings of the 49th annual ACM SIGACT symposium on theory of computing, STOC ’17, Montreal, QC, Canada, June 19–23, 2017. New York, NY: Association for Computing Machinery (ACM) (ISBN 978-1-4503-4528-6). 328-341 (2017). MSC: 68Q05 68Q10 PDF BibTeX XML Cite \textit{P.-É. Meunier} and \textit{D. Woods}, in: Proceedings of the 49th annual ACM SIGACT symposium on theory of computing, STOC '17, Montreal, QC, Canada, June 19--23, 2017. New York, NY: Association for Computing Machinery (ACM). 328--341 (2017; Zbl 1370.68095) Full Text: DOI
Ellis-Monaghan, Joanna A.; Pangborn, Greta; Seeman, Nadrian C.; Blakeley, Sam; Disher, Conor; Falcigno, Mary; Healy, Brianna; Morse, Ada; Singh, Bharti; Westland, Melissa Design tools for reporter strands and DNA origami scaffold strands. (English) Zbl 1370.68091 Theor. Comput. Sci. 671, 69-78 (2017). MSC: 68Q05 05C45 68Q10 68R10 68U05 92D20 PDF BibTeX XML Cite \textit{J. A. Ellis-Monaghan} et al., Theor. Comput. Sci. 671, 69--78 (2017; Zbl 1370.68091) Full Text: DOI
Ota, Makoto; Seki, Shinnosuke Rule set design problems for oritatami systems. (English) Zbl 1370.68096 Theor. Comput. Sci. 671, 26-35 (2017). MSC: 68Q05 68Q10 68Q25 68U05 92D20 PDF BibTeX XML Cite \textit{M. Ota} and \textit{S. Seki}, Theor. Comput. Sci. 671, 26--35 (2017; Zbl 1370.68096) Full Text: DOI
Kari, Lila; Kopecki, Steffen; Meunier, Pierre-Étienne; Patitz, Matthew J.; Seki, Shinnosuke Binary pattern tile set synthesis is NP-hard. (English) Zbl 1370.68109 Algorithmica 78, No. 1, 1-46 (2017). MSC: 68Q17 05B45 68Q80 68T15 PDF BibTeX XML Cite \textit{L. Kari} et al., Algorithmica 78, No. 1, 1--46 (2017; Zbl 1370.68109) Full Text: DOI
Furcy, David; Micka, Samuel; Summers, Scott M. Optimal program-size complexity for self-assembled squares at temperature 1 in 3D. (English) Zbl 1364.68196 Algorithmica 77, No. 4, 1240-1282 (2017). MSC: 68Q05 68Q10 68Q25 PDF BibTeX XML Cite \textit{D. Furcy} et al., Algorithmica 77, No. 4, 1240--1282 (2017; Zbl 1364.68196) Full Text: DOI
Enaganti, Srujan Kumar; Ibarra, Oscar H.; Kari, Lila; Kopecki, Steffen Further remarks on DNA overlap assembly. (English) Zbl 1359.68069 Inf. Comput. 253, Part 1, 143-154 (2017). MSC: 68Q05 68Q45 PDF BibTeX XML Cite \textit{S. K. Enaganti} et al., Inf. Comput. 253, Part 1, 143--154 (2017; Zbl 1359.68069) Full Text: DOI
Chalk, Cameron T.; Fu, Bin; Martinez, Eric; Schweller, Robert; Wylie, Tim Concentration independent random number generation in tile self-assembly. (English) Zbl 1359.68068 Theor. Comput. Sci. 667, 1-15 (2017). MSC: 68Q05 68Q10 PDF BibTeX XML Cite \textit{C. T. Chalk} et al., Theor. Comput. Sci. 667, 1--15 (2017; Zbl 1359.68068) Full Text: DOI
Johnsen, Aleck; Kao, Ming-Yang; Seki, Shinnosuke A manually-checkable proof for the NP-hardness of 11-color pattern self-assembly tileset synthesis. (English) Zbl 1361.90050 J. Comb. Optim. 33, No. 2, 496-529 (2017). MSC: 90C27 PDF BibTeX XML Cite \textit{A. Johnsen} et al., J. Comb. Optim. 33, No. 2, 496--529 (2017; Zbl 1361.90050) Full Text: DOI
Majumder, Urmi; Garg, Sudhanshu; LaBean, Thomas H.; Reif, John H. Activatable tiles for compact robust programmable molecular assembly and other applications. (English) Zbl 1415.68093 Nat. Comput. 15, No. 4, 611-634 (2016). MSC: 68Q05 92D20 PDF BibTeX XML Cite \textit{U. Majumder} et al., Nat. Comput. 15, No. 4, 611--634 (2016; Zbl 1415.68093) Full Text: DOI
Chalk, Cameron; Martinez, Eric; Schweller, Robert; Vega, Luis; Winslow, Andrew; Wylie, Tim Optimal staged self-assembly of general shapes. (English) Zbl 1397.68094 Sankowski, Piotr (ed.) et al., 24th annual European symposium on algorithms, ESA 2016, Aarhus, Denmark, August 22–24, 2016. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-95977-015-6). LIPIcs – Leibniz International Proceedings in Informatics 57, Article 26, 17 p. (2016). MSC: 68Q25 68Q05 68Q30 PDF BibTeX XML Cite \textit{C. Chalk} et al., LIPIcs -- Leibniz Int. Proc. Inform. 57, Article 26, 17 p. (2016; Zbl 1397.68094) Full Text: DOI
Bellia, Marco; Occhiuto, M. Eugenia Programming self-assembly of DNA tiles. (English) Zbl 1358.68099 Fundam. Inform. 143, No. 1-2, 35-49 (2016). MSC: 68Q05 03B40 68Q60 PDF BibTeX XML Cite \textit{M. Bellia} and \textit{M. E. Occhiuto}, Fundam. Inform. 143, No. 1--2, 35--49 (2016; Zbl 1358.68099) Full Text: DOI
Seki, Shinnosuke; Winslow, Andrew The complexity of fixed-height patterned tile self-assembly. (English) Zbl 1379.68122 Han, Yo-Sub (ed.) et al., Implementation and application of automata. 21st international conference, CIAA 2016, Seoul, South Korea, July 19–22, 2016. Proceedings. Cham: Springer (ISBN 978-3-319-40945-0/pbk; 978-3-319-40946-7/ebook). Lecture Notes in Computer Science 9705, 248-259 (2016). MSC: 68Q05 68Q17 68W40 PDF BibTeX XML Cite \textit{S. Seki} and \textit{A. Winslow}, Lect. Notes Comput. Sci. 9705, 248--259 (2016; Zbl 1379.68122) Full Text: DOI
Chalk, Cameron T.; Fernandez, Dominic A.; Huerta, Alejandro; Maldonado, Mario A.; Schweller, Robert T.; Sweet, Leslie Strict self-assembly of fractals using multiple hands. (English) Zbl 1348.68052 Algorithmica 76, No. 1, 195-224 (2016). MSC: 68Q05 28A80 PDF BibTeX XML Cite \textit{C. T. Chalk} et al., Algorithmica 76, No. 1, 195--224 (2016; Zbl 1348.68052) Full Text: DOI
Ellis-Monaghan, Joanna A.; McDowell, Andrew; Moffatt, Iain; Pangborn, Greta DNA origami and the complexity of Eulerian circuits with turning costs. (English) Zbl 1415.68081 Nat. Comput. 14, No. 3, 491-503 (2015). MSC: 68Q05 05C45 05C85 68Q25 90C27 92D20 PDF BibTeX XML Cite \textit{J. A. Ellis-Monaghan} et al., Nat. Comput. 14, No. 3, 491--503 (2015; Zbl 1415.68081) Full Text: DOI
Jonoska, Nataša; Karpenko, Daria; Seki, Shinnosuke Dynamic simulation of 1D cellular automata in the Active aTAM. (English) Zbl 1333.68192 New Generation Comput. 33, No. 3, 271-295 (2015). MSC: 68Q80 PDF BibTeX XML Cite \textit{N. Jonoska} et al., New Generation Comput. 33, No. 3, 271--295 (2015; Zbl 1333.68192) Full Text: DOI
Zhou, Xu; Zhou, Yantao; Li, Kenli; Pan, Guo An efficient tile assembly model for maximum matching problem. (Chinese. English summary) Zbl 1340.68039 J. Hunan Univ., Nat. Sci. 42, No. 2, 114-120 (2015). MSC: 68Q10 68T20 92D20 68W10 68W40 PDF BibTeX XML Cite \textit{X. Zhou} et al., J. Hunan Univ., Nat. Sci. 42, No. 2, 114--120 (2015; Zbl 1340.68039)
Hirabayashi, Miki; Kinoshita, Syunsuke; Tanaka, Shukichi; Honda, Hajime; Kojima, Hiroaki; Oiwa, Kazuhiro Cellular automata approach for characterizing of DNA tile computing. (English) Zbl 1337.68101 J. Cell. Autom. 9, No. 2-3, 111-123 (2014). MSC: 68Q05 68Q80 PDF BibTeX XML Cite \textit{M. Hirabayashi} et al., J. Cell. Autom. 9, No. 2--3, 111--123 (2014; Zbl 1337.68101) Full Text: Link
Demaine, Erik D.; Demaine, Martin L.; Fekete, Sándor P.; Patitz, Matthew J.; Schweller, Robert T.; Winslow, Andrew; Woods, Damien One tile to rule them all: simulating any tile assembly system with a single universal tile. (English) Zbl 1410.68123 Esparza, Javier (ed.) et al., Automata, languages, and programming. 41st international colloquium, ICALP 2014, Copenhagen, Denmark, July 8–11, 2014. Proceedings, Part I. Berlin: Springer. Lect. Notes Comput. Sci. 8572, 368-379 (2014). MSC: 68Q05 92D20 PDF BibTeX XML Cite \textit{E. D. Demaine} et al., Lect. Notes Comput. Sci. 8572, 368--379 (2014; Zbl 1410.68123) Full Text: DOI
Göös, Mika; Lempiäinen, Tuomo; Czeizler, Eugen; Orponen, Pekka Search methods for tile sets in patterned DNA self-assembly. (English) Zbl 1311.68150 J. Comput. Syst. Sci. 80, No. 1, 297-319 (2014). MSC: 68T20 52C20 68Q17 92D20 PDF BibTeX XML Cite \textit{M. Göös} et al., J. Comput. Syst. Sci. 80, No. 1, 297--319 (2014; Zbl 1311.68150) Full Text: DOI
Cannon, Sarah; Demaine, Erik D.; Demaine, Martin L.; Eisenstat, Sarah; Patitz, Matthew J.; Schweller, Robert T.; Summers, Scott M.; Winslow, Andrew Two hands are better than one (up to constant factors): self-assembly in the 2HAM vs. aTAM. (English) Zbl 1354.68078 Portier, Natacha (ed.) et al., 30th international symposium on theoretical aspects of computer science, STACS’ 13, Kiel, Germany, February 27 – March 2, 2013. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-50-7). LIPIcs – Leibniz International Proceedings in Informatics 20, 172-184 (2013). MSC: 68Q05 68Q10 68Q25 PDF BibTeX XML Cite \textit{S. Cannon} et al., LIPIcs -- Leibniz Int. Proc. Inform. 20, 172--184 (2013; Zbl 1354.68078) Full Text: DOI
Czeizler, Eugen; Popa, Alexandru Synthesizing minimal tile sets for complex patterns in the framework of patterned DNA self-assembly. (English) Zbl 1296.68065 Theor. Comput. Sci. 499, 23-37 (2013). MSC: 68Q17 05B45 92D20 PDF BibTeX XML Cite \textit{E. Czeizler} and \textit{A. Popa}, Theor. Comput. Sci. 499, 23--37 (2013; Zbl 1296.68065) Full Text: DOI
Doty, David; Kari, Lila; Masson, Benoît Negative interactions in irreversible self-assembly. (English) Zbl 1262.68040 Algorithmica 66, No. 1, 153-172 (2013). MSC: 68Q05 PDF BibTeX XML Cite \textit{D. Doty} et al., Algorithmica 66, No. 1, 153--172 (2013; Zbl 1262.68040) Full Text: DOI
Chandran, Harish; Gopalkrishnan, Nikhil; Reif, John Tile complexity of approximate squares. (English) Zbl 1262.68185 Algorithmica 66, No. 1, 1-17 (2013). MSC: 68W25 68Q25 92D20 PDF BibTeX XML Cite \textit{H. Chandran} et al., Algorithmica 66, No. 1, 1--17 (2013; Zbl 1262.68185) Full Text: DOI
Padilla, Jennifer E.; Liu, Wenyan; Seeman, Nadrian C. Hierarchical self assembly of patterns from the Robinson tilings: DNA tile design in an enhanced tile assembly model. (English) Zbl 1360.68469 Nat. Comput. 11, No. 2, 323-338 (2012). MSC: 68Q05 68Q10 PDF BibTeX XML Cite \textit{J. E. Padilla} et al., Nat. Comput. 11, No. 2, 323--338 (2012; Zbl 1360.68469) Full Text: DOI
Chandran, Harish; Gopalkrishnan, Nikhil; Reif, John Tile complexity of linear assemblies. (English) Zbl 1253.68133 SIAM J. Comput. 41, No. 4, 1051-1073 (2012). MSC: 68Q10 68R05 68Q87 68Q17 PDF BibTeX XML Cite \textit{H. Chandran} et al., SIAM J. Comput. 41, No. 4, 1051--1073 (2012; Zbl 1253.68133) Full Text: DOI
Maňuch, Ján; Stacho, Ladislav; Stoll, Christine Step-wise tile assembly with a constant number of tile types. (English) Zbl 1251.68103 Nat. Comput. 11, No. 3, 535-550 (2012). MSC: 68Q05 92D20 52C45 90C27 PDF BibTeX XML Cite \textit{J. Maňuch} et al., Nat. Comput. 11, No. 3, 535--550 (2012; Zbl 1251.68103) Full Text: DOI
Patitz, Matthew J. An introduction to tile-based self-assembly. (English) Zbl 1269.68052 Durand-Lose, Jérôme (ed.) et al., Unconventional computation and natural computation. 11th international conference, UCNC 2012, Orléan, France, September 3–7, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-32893-0/pbk). Lecture Notes in Computer Science 7445, 34-62 (2012). Reviewer: Gregory Loren McColm (Tampa) MSC: 68Q05 68Q10 82D80 PDF BibTeX XML Cite \textit{M. J. Patitz}, Lect. Notes Comput. Sci. 7445, 34--62 (2012; Zbl 1269.68052) Full Text: DOI
Brijder, Robert; Gillis, Joris J. M.; Van den Bussche, Jan A comparison of graph-theoretic DNA hybridization models. (English) Zbl 1242.68082 Theor. Comput. Sci. 429, 46-53 (2012). MSC: 68P05 68P15 68R10 68Q10 05C78 92D20 PDF BibTeX XML Cite \textit{R. Brijder} et al., Theor. Comput. Sci. 429, 46--53 (2012; Zbl 1242.68082) Full Text: DOI
Kari, Lila; Masson, Benoît Polyominoes simulating arbitrary-neighborhood zippers and tilings. (English) Zbl 1246.68242 Theor. Comput. Sci. 412, No. 43, 6083-6100 (2011). Reviewer: Attila Fazekas (Debrecen) MSC: 68U05 68R05 05B45 05B50 PDF BibTeX XML Cite \textit{L. Kari} and \textit{B. Masson}, Theor. Comput. Sci. 412, No. 43, 6083--6100 (2011; Zbl 1246.68242) Full Text: DOI
Patitz, Matthew J.; Summers, Scott M. Self-assembly of decidable sets. (English) Zbl 1217.68097 Nat. Comput. 10, No. 2, 853-877 (2011). MSC: 68Q05 05B45 68Q10 PDF BibTeX XML Cite \textit{M. J. Patitz} and \textit{S. M. Summers}, Nat. Comput. 10, No. 2, 853--877 (2011; Zbl 1217.68097) Full Text: DOI
Majumder, Urmi; Reif, John H. Design of a biomolecular device that executes process algebra. (English) Zbl 1214.68250 Nat. Comput. 10, No. 1, 447-466 (2011). MSC: 68Q85 68Q05 92C40 92D20 PDF BibTeX XML Cite \textit{U. Majumder} and \textit{J. H. Reif}, Nat. Comput. 10, No. 1, 447--466 (2011; Zbl 1214.68250) Full Text: DOI
Reif, John H.; Sahu, Sudheer; Yin, Peng Complexity of graph self-assembly in accretive systems and self-destructible systems. (English) Zbl 1237.68103 Theor. Comput. Sci. 412, No. 17, 1592-1605 (2011). Reviewer: Hebert Pérez-Rosés (Lleida) MSC: 68Q25 68R10 92D10 PDF BibTeX XML Cite \textit{J. H. Reif} et al., Theor. Comput. Sci. 412, No. 17, 1592--1605 (2011; Zbl 1237.68103) Full Text: DOI
Doty, David Randomized self-assembly for exact shapes. (English) Zbl 1247.68318 SIAM J. Comput. 39, No. 8, 3521-3552 (2010). Reviewer: Gregory Loren McColm (Tampa) MSC: 68W20 05D40 68Q05 68Q10 PDF BibTeX XML Cite \textit{D. Doty}, SIAM J. Comput. 39, No. 8, 3521--3552 (2010; Zbl 1247.68318) Full Text: DOI
Reif, John H.; Majumder, Urmi Isothermal reactivating whiplash PCR for locally programmable molecular computation. (English) Zbl 1205.68155 Nat. Comput. 9, No. 1, 183-206 (2010). MSC: 68Q10 68U99 PDF BibTeX XML Cite \textit{J. H. Reif} and \textit{U. Majumder}, Nat. Comput. 9, No. 1, 183--206 (2010; Zbl 1205.68155) Full Text: DOI
Luhrs, Chris Polyomino-safe DNA self-assembly via block replacement. (English) Zbl 1287.68048 Nat. Comput. 9, No. 1, 97-109 (2010). MSC: 68Q05 05B50 92D10 PDF BibTeX XML Cite \textit{C. Luhrs}, Nat. Comput. 9, No. 1, 97--109 (2010; Zbl 1287.68048) Full Text: DOI
Pidaparti, Ramana M.; Svintradze, David V.; Shan, YingFeng; Yokota, Hiroki Optimization of hydrogen bonds for combined DNA/collagen complex. (English) Zbl 1400.92198 J. Theor. Biol. 256, No. 2, 149-156 (2009). MSC: 92C40 PDF BibTeX XML Cite \textit{R. M. Pidaparti} et al., J. Theor. Biol. 256, No. 2, 149--156 (2009; Zbl 1400.92198) Full Text: DOI
Schulman, Rebecca; Winfree, Erik Programmable control of nucleation for algorithmic self-assembly. (English) Zbl 1205.68497 SIAM J. Comput. 39, No. 4, 1581-1616 (2009). MSC: 68W05 82D25 68W40 PDF BibTeX XML Cite \textit{R. Schulman} and \textit{E. Winfree}, SIAM J. Comput. 39, No. 4, 1581--1616 (2009; Zbl 1205.68497) Full Text: DOI
Adleman, Leonard; Kari, Jarkko; Kari, Lila; Reishus, Dustin; Sosik, Petr The undecidability of the infinite ribbon problem: implications for computing by self-assembly. (English) Zbl 1191.68419 SIAM J. Comput. 38, No. 6, 2356-2381 (2009). MSC: 68Q80 37B15 03D35 92B05 PDF BibTeX XML Cite \textit{L. Adleman} et al., SIAM J. Comput. 38, No. 6, 2356--2381 (2009; Zbl 1191.68419) Full Text: DOI
Fujibayashi, Kenichi; Zhang, David Yu; Winfree, Erik; Murata, Satoshi Error suppression mechanisms for DNA tile self-assembly and their simulation. (English) Zbl 1192.68825 Nat. Comput. 8, No. 3, 589-612 (2009). MSC: 68W05 PDF BibTeX XML Cite \textit{K. Fujibayashi} et al., Nat. Comput. 8, No. 3, 589--612 (2009; Zbl 1192.68825) Full Text: DOI
Reif, John H.; Sahu, Sudheer Autonomous programmable DNA nanorobotic devices using DNAzymes. (English) Zbl 1178.68325 Theor. Comput. Sci. 410, No. 15, 1428-1439 (2009). MSC: 68Q45 68U99 PDF BibTeX XML Cite \textit{J. H. Reif} and \textit{S. Sahu}, Theor. Comput. Sci. 410, No. 15, 1428--1439 (2009; Zbl 1178.68325) Full Text: DOI
Jonoska, Nataša; McColm, Gregory L. Complexity classes for self-assembling flexible tiles. (English) Zbl 1169.68019 Theor. Comput. Sci. 410, No. 4-5, 332-346 (2009). MSC: 68Q15 68Q10 92D20 PDF BibTeX XML Cite \textit{N. Jonoska} and \textit{G. L. McColm}, Theor. Comput. Sci. 410, No. 4--5, 332--346 (2009; Zbl 1169.68019) Full Text: DOI
Demaine, Erik D.; Demaine, Martin L.; Fekete, Sándor P.; Ishaque, Mashhood; Rafalin, Eynat; Schweller, Robert T.; Souvaine, Diane L. Staged self-assembly: nanomanufacture of arbitrary shapes with \(O(1)\) glues. (English) Zbl 1156.68023 Nat. Comput. 7, No. 3, 347-370 (2008). MSC: 68Q10 PDF BibTeX XML Cite \textit{E. D. Demaine} et al., Nat. Comput. 7, No. 3, 347--370 (2008; Zbl 1156.68023) Full Text: DOI
Thies, William; Urbanski, John Paul; Thorsen, Todd; Amarasinghe, Saman Abstraction layers for scalable microfluidic biocomputing. (English) Zbl 1147.68524 Nat. Comput. 7, No. 2, 255-275 (2008). MSC: 68Q10 PDF BibTeX XML Cite \textit{W. Thies} et al., Nat. Comput. 7, No. 2, 255--275 (2008; Zbl 1147.68524) Full Text: DOI
Garzon, Max H.; Phan, Vinhthuy; Roy, Sujoy; Neel, Andrew J. In search of optimal codes for DNA computing. (English) Zbl 1132.68392 Mao, Chengde (ed.) et al., DNA computing. 12th international meeting on DNA computing, DNA12, Seoul, Korea, June 5–9, 2006. Revised selected papers. Berlin: Springer (ISBN 978-3-540-49024-1/pbk). Lecture Notes in Computer Science 4287, 143-156 (2006). MSC: 68Q10 68Q05 PDF BibTeX XML Cite \textit{M. H. Garzon} et al., Lect. Notes Comput. Sci. 4287, 143--156 (2008; Zbl 1132.68392) Full Text: DOI
Garzon, Max H.; Blain, Derrel R.; West, Michael Embedded models of self-assembly of DNA complexes. (English) Zbl 1297.92053 Botelho, Fernanda (ed.) et al., Fluids and waves. Recent trends in applied analysis. Research conference, May 11–13, 2006, The University of Memphis, Memphis, TN, USA. Providence, RI: American Mathematical Society (AMS) (ISBN 978-0-8218-4247-8/pbk). Contemporary Mathematics 440, 145-158 (2007). MSC: 92D10 68Q05 68Q10 PDF BibTeX XML Cite \textit{M. H. Garzon} et al., Contemp. Math. 440, 145--158 (2007; Zbl 1297.92053)
Franco, Giuditta; Jonoska, Nataša Forbidding-enforcing graphs for self-assembly. (English) Zbl 1089.68041 Congr. Numerantium 177, 51-63 (2005). MSC: 68Q10 68R10 92D20 PDF BibTeX XML Cite \textit{G. Franco} and \textit{N. Jonoska}, Congr. Numerantium 177, 51--63 (2005; Zbl 1089.68041)
Sa-Ardyen, Phiset; Jonoska, Nataša; Seeman, Nadrian C. Self-assembling DNA graphs. (English) Zbl 1059.68604 Nat. Comput. 2, No. 4, 427-438 (2003). MSC: 68R10 68Q05 92D20 PDF BibTeX XML Cite \textit{P. Sa-Ardyen} et al., Nat. Comput. 2, No. 4, 427--438 (2003; Zbl 1059.68604) Full Text: DOI
Reif, John H. Molecular assembly and computation: From theory to experimental demonstrations. (English) Zbl 1056.68544 Widmayer, Peter (ed.) et al., Automata, languages and programming. 29th international colloquium, ICALP 2002, Málaga, Spain, July 8–13, 2002. Proceedings. Berlin: Springer (ISBN 3-540-43864-5). Lect. Notes Comput. Sci. 2380, 1-21 (2002). MSC: 68Q05 68Q10 PDF BibTeX XML Cite \textit{J. H. Reif}, Lect. Notes Comput. Sci. 2380, 1--21 (2002; Zbl 1056.68544) Full Text: Link
Carbone, Alessandra; Seeman, Nadrian C. A route to fractal DNA-assembly. (English) Zbl 1020.68080 Nat. Comput. 1, No. 4, 469-480 (2002). MSC: 68T10 PDF BibTeX XML Cite \textit{A. Carbone} and \textit{N. C. Seeman}, Nat. Comput. 1, No. 4, 469--480 (2002; Zbl 1020.68080) Full Text: DOI
Wąsiewicz, P.; Malinowski, A.; Nowak, R.; Mulawka, J. J.; Borsuk, P. DNA computing: Implementation of data flow logical operations. (English) Zbl 1016.68039 FGCS. Future Generation Computer Systems 17, No. 4, 361-378 (2001). MSC: 68Q10 PDF BibTeX XML Cite \textit{P. Wąsiewicz} et al., Future Gener. Comput. Syst. 17, No. 4, 361--378 (2001; Zbl 1016.68039) Full Text: DOI
Lagoudakis, Michail G.; LaBean, Thomas H. 2D DNA self-assembly for satisfiability. (English) Zbl 0969.68085 Winfree, Erik (ed.) et al., DNA based computers V. DIMACS workshop, Massachusetts Institute of Technology, Cambridge, MA, USA, June 14-15, 1999. Providence, RI: AMS, American Mathematical Society. DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 54, 141-154 (1999). MSC: 68Q25 68Q05 52C20 PDF BibTeX XML Cite \textit{M. G. Lagoudakis} and \textit{T. H. LaBean}, DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 54, 141--154 (1999; Zbl 0969.68085)
Berger, Bonnie; Shor, Peter W.; Tucker-Kellogg, Lisa; King, Jonathan Local rule-based theory of virus shell assembly. (English) Zbl 0799.92004 Proc. Natl. Acad. Sci. USA 91, No. 16, 7732-7736 (1994). MSC: 92C40 PDF BibTeX XML Cite \textit{B. Berger} et al., Proc. Natl. Acad. Sci. USA 91, No. 16, 7732--7736 (1994; Zbl 0799.92004) Full Text: DOI