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Pérez-Arancibia, Carlos; Turc, Catalin; Faria, Luiz Planewave density interpolation methods for 3D Helmholtz boundary integral equations. (English) Zbl 1430.45001 SIAM J. Sci. Comput. 41, No. 4, A2088-A2116 (2019). MSC: 45A05 45E99 65R20 35J05 PDFBibTeX XMLCite \textit{C. Pérez-Arancibia} et al., SIAM J. Sci. Comput. 41, No. 4, A2088--A2116 (2019; Zbl 1430.45001) Full Text: DOI arXiv
Hazra, Tania; Ullah, Sheik Ahmed; Wang, Siwen; Alexov, Emil; Zhao, Shan A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states. (English) Zbl 1418.92042 J. Math. Biol. 79, No. 2, 631-672 (2019). MSC: 92C40 35Q92 65M06 PDFBibTeX XMLCite \textit{T. Hazra} et al., J. Math. Biol. 79, No. 2, 631--672 (2019; Zbl 1418.92042) Full Text: DOI
Chen, Jiahui; Geng, Weihua On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver. (English) Zbl 1416.65487 J. Comput. Phys. 373, 750-762 (2018). MSC: 65N38 92C40 65F08 PDFBibTeX XMLCite \textit{J. Chen} and \textit{W. Geng}, J. Comput. Phys. 373, 750--762 (2018; Zbl 1416.65487) Full Text: DOI
Deng, Weishan; Xu, Jin; Zhao, Shan On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics. (English) Zbl 1383.78036 J. Comput. Appl. Math. 330, 456-474 (2018). Reviewer: Jichun Li (Las Vegas) MSC: 78M10 78A30 92C40 65N50 35Q20 35Q60 35B65 65M06 65M12 78A70 PDFBibTeX XMLCite \textit{W. Deng} et al., J. Comput. Appl. Math. 330, 456--474 (2018; Zbl 1383.78036) Full Text: DOI
Qiao, Yu; Liu, Xuejiao; Chen, Minxin; Lu, Benzhuo A local approximation of fundamental measure theory incorporated into three dimensional Poisson-Nernst-Planck equations to account for hard sphere repulsion among ions. (English) Zbl 1345.35113 J. Stat. Phys. 163, No. 1, 156-174 (2016). Reviewer: Eugene Postnikov (Kursk) MSC: 35Q82 78A57 82B80 PDFBibTeX XMLCite \textit{Y. Qiao} et al., J. Stat. Phys. 163, No. 1, 156--174 (2016; Zbl 1345.35113) Full Text: DOI arXiv
Zhang, Bo; Peng, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai; Lu, Benzhuo Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy. (English) Zbl 1344.78004 Comput. Phys. Commun. 190, 173-181 (2015). MSC: 78-04 78M16 78A70 65Y05 PDFBibTeX XMLCite \textit{B. Zhang} et al., Comput. Phys. Commun. 190, 173--181 (2015; Zbl 1344.78004) Full Text: DOI
Lu, Benzhuo Finite element modeling of biomolecular systems in ionic solution. (English) Zbl 1397.92209 Zhang, Yongjie (Jessica) (ed.), Image-based geometric modeling and mesh generation. Dordrecht: Springer (ISBN 978-94-007-4254-3/hbk; 978-94-007-4255-0/ebook). Lecture Notes in Computational Vision and Biomechanics 3, 271-301 (2013). MSC: 92C40 65N30 92C05 PDFBibTeX XMLCite \textit{B. Lu}, Lect. Notes Comput. Vis. Biomech. 3, 271--301 (2013; Zbl 1397.92209) Full Text: DOI
Geng, Weihua; Krasny, Robert A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules. (English) Zbl 1349.78084 J. Comput. Phys. 247, 62-78 (2013). MSC: 78M15 65N38 78A30 92C30 PDFBibTeX XMLCite \textit{W. Geng} and \textit{R. Krasny}, J. Comput. Phys. 247, 62--78 (2013; Zbl 1349.78084) Full Text: DOI
Li, Chuan; Li, Lin; Petukh, Marharyta; Alexov, Emil Progress in developing Poisson-Boltzmann equation solvers. (English) Zbl 1277.65086 Mol. Based Math. Biol. 1, 42-62 (2013). MSC: 65N06 65N38 68W10 92-08 92C05 92C40 PDFBibTeX XMLCite \textit{C. Li} et al., Mol. Based Math. Biol. 1, 42--62 (2013; Zbl 1277.65086) Full Text: DOI