Gasior, K.; Forest, M. G.; Gladfelter, A. S.; Newby, J. M. Modeling the mechanisms by which coexisting biomolecular RNA-protein condensates form. (English) Zbl 07308615 Bull. Math. Biol. 82, No. 12, Paper No. 153, 16 p. (2020). MSC: 92C40 35Q92 PDF BibTeX XML Cite \textit{K. Gasior} et al., Bull. Math. Biol. 82, No. 12, Paper No. 153, 16 p. (2020; Zbl 07308615) Full Text: DOI
Roy, Suvam; Bapat, Niraja V.; Derr, Julien; Rajamani, Sudha; Sengupta, Supratim Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic Earth. (English) Zbl 07294149 J. Theor. Biol. 506, Article ID 110446, 13 p. (2020). MSC: 92C40 PDF BibTeX XML Cite \textit{S. Roy} et al., J. Theor. Biol. 506, Article ID 110446, 13 p. (2020; Zbl 07294149) Full Text: DOI
Agarwal, Divyansh; Wang, Jingshu; Zhang, Nancy R. Data denoising and post-denoising corrections in single cell RNA sequencing. (English) Zbl 07292499 Stat. Sci. 35, No. 1, 112-128 (2020). MSC: 62 PDF BibTeX XML Cite \textit{D. Agarwal} et al., Stat. Sci. 35, No. 1, 112--128 (2020; Zbl 07292499) Full Text: DOI Euclid
Li, Bo Simultaneous inference of gene isoform expression for RNA sequencing data. (English) Zbl 07289276 REVSTAT 18, No. 2, 153-163 (2020). MSC: 62P10 62F40 62K15 92D20 PDF BibTeX XML Cite \textit{B. Li}, REVSTAT 18, No. 2, 153--163 (2020; Zbl 07289276) Full Text: Link
Cao, Meng; Zhou, Wen; Breidt, F. Jay; Peers, Graham Large scale maximum average power multiple inference on time-course count data with application to RNA-seq analysis. (English) Zbl 1451.62114 Biometrics 76, No. 1, 9-22 (2020). MSC: 62P10 62M10 92D20 92B15 PDF BibTeX XML Cite \textit{M. Cao} et al., Biometrics 76, No. 1, 9--22 (2020; Zbl 1451.62114) Full Text: DOI
Xu, Hongyan Big data challenges in genomics. (English) Zbl 1444.62126 Rao, Arni Srinivasa (ed.) et al., Principles and methods for data science. Amsterdam: Elsevier/North Holland. Handb. Stat. 43, 337-348 (2020). MSC: 62P10 62R07 92-08 PDF BibTeX XML Cite \textit{H. Xu}, Handb. Stat. 43, 337--348 (2020; Zbl 1444.62126) Full Text: DOI
Rashid, Naim U.; Li, Quefeng; Yeh, Jen Jen; Ibrahim, Joseph G. Modeling between-study heterogeneity for improved replicability in gene signature selection and clinical prediction. (English) Zbl 1441.62471 J. Am. Stat. Assoc. 115, No. 531, 1125-1138 (2020). MSC: 62P10 62J12 PDF BibTeX XML Cite \textit{N. U. Rashid} et al., J. Am. Stat. Assoc. 115, No. 531, 1125--1138 (2020; Zbl 1441.62471) Full Text: DOI
Wilson, Douglas R.; Jin, Chong; Ibrahim, Joseph G.; Sun, Wei ICeD-t provides accurate estimates of immune cell abundance in tumor samples by allowing for aberrant gene expression patterns. (English) Zbl 1441.62534 J. Am. Stat. Assoc. 115, No. 531, 1055-1065 (2020). MSC: 62P10 62H30 PDF BibTeX XML Cite \textit{D. R. Wilson} et al., J. Am. Stat. Assoc. 115, No. 531, 1055--1065 (2020; Zbl 1441.62534) Full Text: DOI
Wilson, Douglas R.; Ibrahim, Joseph G.; Sun, Wei Mapping tumor-specific expression QTLs in impure tumor samples. (English) Zbl 1437.62657 J. Am. Stat. Assoc. 115, No. 529, 79-89 (2020). MSC: 62P10 92D99 PDF BibTeX XML Cite \textit{D. R. Wilson} et al., J. Am. Stat. Assoc. 115, No. 529, 79--89 (2020; Zbl 1437.62657) Full Text: DOI
Jedwab, Jonathan; Petrie, Tara; Simon, Samuel An infinite class of unsaturated rooted trees corresponding to designable RNA secondary structures. (English) Zbl 07226876 Theor. Comput. Sci. 833, 147-163 (2020). MSC: 92D20 PDF BibTeX XML Cite \textit{J. Jedwab} et al., Theor. Comput. Sci. 833, 147--163 (2020; Zbl 07226876) Full Text: DOI
Liu, Ming; Meng, Fanwei; Hu, Dongpo Impacts of multiple time delays on a gene regulatory network mediated by small noncoding RNA. (English) Zbl 1446.34102 Int. J. Bifurcation Chaos Appl. Sci. Eng. 30, No. 5, Article ID 2050069, 25 p. (2020). MSC: 34K60 92D15 34K20 34K21 34K18 34K13 34K17 34K19 PDF BibTeX XML Cite \textit{M. Liu} et al., Int. J. Bifurcation Chaos Appl. Sci. Eng. 30, No. 5, Article ID 2050069, 25 p. (2020; Zbl 1446.34102) Full Text: DOI
Willmott, Devin; Murrugarra, David; Ye, Qiang Improving RNA secondary structure prediction via state inference with deep recurrent neural networks. (English) Zbl 1439.92147 Comput. Math. Biophys. 8, No. 1, 36-50 (2020). MSC: 92D20 PDF BibTeX XML Cite \textit{D. Willmott} et al., Comput. Math. Biophys. 8, No. 1, 36--50 (2020; Zbl 1439.92147) Full Text: DOI
Clote, P. Are RNA networks scale-free? (English) Zbl 1437.62174 J. Math. Biol. 80, No. 5, 1291-1321 (2020). Reviewer: Wiesław Dziubdziela (Miedziana Góra) MSC: 62G32 62G07 05C82 68R05 92D20 62P10 PDF BibTeX XML Cite \textit{P. Clote}, J. Math. Biol. 80, No. 5, 1291--1321 (2020; Zbl 1437.62174) Full Text: DOI
Gibo, Shingo; Kurosawa, Gen Theoretical study on the regulation of circadian rhythms by RNA methylation. (English) Zbl 1430.92009 J. Theor. Biol. 490, Article ID 110140, 10 p. (2020). MSC: 92B25 92C40 PDF BibTeX XML Cite \textit{S. Gibo} and \textit{G. Kurosawa}, J. Theor. Biol. 490, Article ID 110140, 10 p. (2020; Zbl 1430.92009) Full Text: DOI
Blokhuis, Alex; Nghe, Philippe; Peliti, Luca; Lacoste, David The generality of transient compartmentalization and its associated error thresholds. (English) Zbl 1429.92036 J. Theor. Biol. 487, Article ID 110110, 13 p. (2020). MSC: 92C15 92C37 92D15 PDF BibTeX XML Cite \textit{A. Blokhuis} et al., J. Theor. Biol. 487, Article ID 110110, 13 p. (2020; Zbl 1429.92036) Full Text: DOI
He, Tian-Xiao \(A\)-sequences, \(Z\)-sequence, and \(B\)-sequences of Riordan matrices. (English) Zbl 1431.05007 Discrete Math. 343, No. 3, Article ID 111718, 18 p. (2020). MSC: 05A15 05A19 05A05 PDF BibTeX XML Cite \textit{T.-X. He}, Discrete Math. 343, No. 3, Article ID 111718, 18 p. (2020; Zbl 1431.05007) Full Text: DOI arXiv
Giaretta, Alberto; Toffolo, Gianna Maria; Elston, Timothy C. Stochastic modeling of human papillomavirus early promoter gene regulation. (English) Zbl 1429.92105 J. Theor. Biol. 486, Article ID 110057, 15 p. (2020). MSC: 92D10 92C40 60H30 PDF BibTeX XML Cite \textit{A. Giaretta} et al., J. Theor. Biol. 486, Article ID 110057, 15 p. (2020; Zbl 1429.92105) Full Text: DOI
Sekula, Michael; Gaskins, Jeremy; Datta, Susmita Detection of differentially expressed genes in discrete single-cell RNA sequencing data using a hurdle model with correlated random effects. (English) Zbl 1448.62186 Biometrics 75, No. 4, 1051-1062 (2019). MSC: 62P10 62H30 92D20 PDF BibTeX XML Cite \textit{M. Sekula} et al., Biometrics 75, No. 4, 1051--1062 (2019; Zbl 1448.62186) Full Text: DOI
Suner, Aslı Clustering methods for single-cell RNA-sequencing expression data: performance evaluation with varying sample sizes and cell compositions. (English) Zbl 1445.92228 Stat. Appl. Genet. Mol. Biol. 18, No. 5, Article ID 20190004, 14 p. (2019). MSC: 92D20 62P10 62H30 PDF BibTeX XML Cite \textit{A. Suner}, Stat. Appl. Genet. Mol. Biol. 18, No. 5, Article ID 20190004, 14 p. (2019; Zbl 1445.92228) Full Text: DOI
Han, Henry; Liu, Wenbin A survey on normalization of single-cell RNA sequencing. (English) Zbl 1449.92036 J. Guangzhou Univ., Nat. Sci. 18, No. 2, 44-55 (2019). MSC: 92D20 PDF BibTeX XML Cite \textit{H. Han} and \textit{W. Liu}, J. Guangzhou Univ., Nat. Sci. 18, No. 2, 44--55 (2019; Zbl 1449.92036)
Zhabotynsky, Vasyl; Inoue, Kaoru; Magnuson, Terry; Calabrese, J. Mauro; Sun, Wei A statistical method for joint estimation of cis-eQTLs and parent-of-origin effects under family trio design. (English) Zbl 1436.62658 Biometrics 75, No. 3, 864-874 (2019). MSC: 62P10 92D20 62K20 62H12 PDF BibTeX XML Cite \textit{V. Zhabotynsky} et al., Biometrics 75, No. 3, 864--874 (2019; Zbl 1436.62658) Full Text: DOI
Shi, Xianfeng; Liu, Xuejun; Zhang, Li PUseqClust: a clustering analysis method for RNA-seq data. (Chinese. English summary) Zbl 1449.62254 J. Softw. 30, No. 9, 2857-2868 (2019). MSC: 62P10 62H30 68T10 92D20 PDF BibTeX XML Cite \textit{X. Shi} et al., J. Softw. 30, No. 9, 2857--2868 (2019; Zbl 1449.62254) Full Text: DOI
Liu, Yiyi; Warren, Joshua L.; Zhao, Hongyu A hierarchical Bayesian model for single-cell clustering using RNA-sequencing data. (English) Zbl 1433.62311 Ann. Appl. Stat. 13, No. 3, 1733-1752 (2019). MSC: 62P10 62H30 62D10 92D20 PDF BibTeX XML Cite \textit{Y. Liu} et al., Ann. Appl. Stat. 13, No. 3, 1733--1752 (2019; Zbl 1433.62311) Full Text: DOI Euclid
Carbó-Dorca, Ramon; Chakraborty, Tanmoy Hypercubes defined on \(n\)-ary sets, the Erdös-Faber-Lovász conjecture on graph coloring, and the description spaces of polypeptides and RNA. (English) Zbl 1429.92112 J. Math. Chem. 57, No. 10, 2182-2194 (2019). MSC: 92D20 05C90 PDF BibTeX XML Cite \textit{R. Carbó-Dorca} and \textit{T. Chakraborty}, J. Math. Chem. 57, No. 10, 2182--2194 (2019; Zbl 1429.92112) Full Text: DOI
Han, Yo-Sub; Kim, Hwee; Rogers, Trent A.; Seki, Shinnosuke Self-attraction removal from Oritatami systems. (English) Zbl 1427.68080 Int. J. Found. Comput. Sci. 30, No. 6-7, 1047-1067 (2019). MSC: 68Q07 92D20 PDF BibTeX XML Cite \textit{Y.-S. Han} et al., Int. J. Found. Comput. Sci. 30, No. 6--7, 1047--1067 (2019; Zbl 1427.68080) Full Text: DOI
Mamasakhlisov, A. Ye. Short-range disorder in polyelectrolytes: replicas and constrained annealing comparison. (English) Zbl 1428.82029 Proc. Yerevan State Univ., Phys. Math. Sci. 53, No. 1, 47-52 (2019). MSC: 82B44 35Q20 35Q60 82D60 92D20 90C59 PDF BibTeX XML Cite \textit{A. Ye. Mamasakhlisov}, Proc. Yerevan State Univ., Phys. Math. Sci. 53, No. 1, 47--52 (2019; Zbl 1428.82029)
Rabin, Neta; Fishelov, Dalia Two directional Laplacian pyramids with application to data imputation. (English) Zbl 1430.68284 Adv. Comput. Math. 45, No. 4, 2123-2146 (2019). MSC: 68T09 92D20 PDF BibTeX XML Cite \textit{N. Rabin} and \textit{D. Fishelov}, Adv. Comput. Math. 45, No. 4, 2123--2146 (2019; Zbl 1430.68284) Full Text: DOI
Dhawan, Andrew; Harris, Adrian L.; Buffa, Francesca M.; Scott, Jacob G. Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network. (English) Zbl 1422.92053 J. Theor. Biol. 481, 54-60 (2019). MSC: 92C42 92C40 34C15 PDF BibTeX XML Cite \textit{A. Dhawan} et al., J. Theor. Biol. 481, 54--60 (2019; Zbl 1422.92053) Full Text: DOI
Li, Xiaohong; Wu, Dongfeng; Cooper, Nigel G. F.; Rai, Shesh N. Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model. (English) Zbl 1420.92087 Stat. Appl. Genet. Mol. Biol. 18, No. 1, Article ID 20180021, 17 p. (2019). MSC: 92D20 62P10 PDF BibTeX XML Cite \textit{X. Li} et al., Stat. Appl. Genet. Mol. Biol. 18, No. 1, Article ID 20180021, 17 p. (2019; Zbl 1420.92087) Full Text: DOI
Devi, R. Santhiya; Thenmozhi, K.; Rayappan, John Bosco Balaguru; Amirtharajan, Rengarajan; Praveenkumar, Padmapriya Entropy influenced RNA diffused quantum chaos to conserve medical data privacy. (English) Zbl 1433.81064 Int. J. Theor. Phys. 58, No. 6, 1937-1956 (2019). MSC: 81P94 92B05 94A60 PDF BibTeX XML Cite \textit{R. S. Devi} et al., Int. J. Theor. Phys. 58, No. 6, 1937--1956 (2019; Zbl 1433.81064) Full Text: DOI
Li, Thomas J. X.; Burris, Christie S.; Reidys, Christian M. The block spectrum of RNA pseudoknot structures. (English) Zbl 1420.92086 J. Math. Biol. 79, No. 3, 791-822 (2019). MSC: 92D20 PDF BibTeX XML Cite \textit{T. J. X. Li} et al., J. Math. Biol. 79, No. 3, 791--822 (2019; Zbl 1420.92086) Full Text: DOI
Han, Yo-Sub; Kim, Hwee Ruleset optimization on isomorphic oritatami systems. (English) Zbl 1423.68169 Theor. Comput. Sci. 785, 128-139 (2019). MSC: 68Q05 92D20 PDF BibTeX XML Cite \textit{Y.-S. Han} and \textit{H. Kim}, Theor. Comput. Sci. 785, 128--139 (2019; Zbl 1423.68169) Full Text: DOI
Rahman, Atif; Pachter, Lior Transcript abundance estimation and the laminar packing problem. (English) Zbl 1416.92133 Holmes, Ian (ed.) et al., Algorithms for computational biology. 6th international conference, AlCoB 2019, Berkeley, CA, USA, May 28–30, 2019. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11488, 203-211 (2019). MSC: 92D20 68W25 68Q25 PDF BibTeX XML Cite \textit{A. Rahman} and \textit{L. Pachter}, Lect. Notes Comput. Sci. 11488, 203--211 (2019; Zbl 1416.92133) Full Text: DOI
Petingi, Louis; Schlick, Tamar Graph-theoretic partitioning of RNAs and classification of pseudoknots. (English) Zbl 1416.92132 Holmes, Ian (ed.) et al., Algorithms for computational biology. 6th international conference, AlCoB 2019, Berkeley, CA, USA, May 28–30, 2019. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11488, 68-79 (2019). MSC: 92D20 05C90 PDF BibTeX XML Cite \textit{L. Petingi} and \textit{T. Schlick}, Lect. Notes Comput. Sci. 11488, 68--79 (2019; Zbl 1416.92132) Full Text: DOI
Xuan, Zhanwei; Feng, Xiang; Yu, Jingwen; Ping, Pengyao; Zhao, Haochen; Zhu, Xianyou; Wang, Lei A novel method for predicting disease-associated lncRNA-mIRNA pairs based on the higher-order orthogonal iteration. (English) Zbl 1423.92128 Comput. Math. Methods Med. 2019, Article ID 7614850, 13 p. (2019). MSC: 92C50 92C40 PDF BibTeX XML Cite \textit{Z. Xuan} et al., Comput. Math. Methods Med. 2019, Article ID 7614850, 13 p. (2019; Zbl 1423.92128) Full Text: DOI
Jost, Jürgen Biology and mathematics. (Biologie und Mathematik.) (German) Zbl 1443.92002 Berlin: Springer Spektrum (ISBN 978-3-662-59479-7/pbk; 978-3-662-59480-3/ebook). xv, 304 p. (2019). Reviewer: Irina Ioana Mohorianu (Oxford) MSC: 92-02 92D15 92C40 92C37 92C35 92D40 92D25 92C20 92B20 92C42 PDF BibTeX XML Cite \textit{J. Jost}, Biologie und Mathematik. Berlin: Springer Spektrum (2019; Zbl 1443.92002) Full Text: DOI
Wang, Ziheng; Yeo, Grace H. T.; Sherwood, Richard; Gifford, David Disentangled representations of cellular identity. (English) Zbl 1412.92108 Cowen, Lenore J. (ed.), Research in computational molecular biology. 23rd annual international conference, RECOMB 2019, Washington, DC, USA, May 5–8, 2019. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11467, 256-271 (2019). MSC: 92C40 68T05 PDF BibTeX XML Cite \textit{Z. Wang} et al., Lect. Notes Comput. Sci. 11467, 256--271 (2019; Zbl 1412.92108) Full Text: DOI
Bringmann, Karl; Grandoni, Fabrizio; Saha, Barna; Williams, Virginia Vassilevska Truly subcubic algorithms for language edit distance and RNA folding via fast bounded-difference min-plus product. (English) Zbl 1421.68258 SIAM J. Comput. 48, No. 2, 481-512 (2019). MSC: 68W40 68W32 92D20 PDF BibTeX XML Cite \textit{K. Bringmann} et al., SIAM J. Comput. 48, No. 2, 481--512 (2019; Zbl 1421.68258) Full Text: DOI
Jungck, John; Knisley, Debra; Pangborn, Greta; Riehl, Manda; Wiesner, Emilie Multiscale graph-theoretic modeling of biomolecular structures. (English) Zbl 1409.92183 Robeva, Raina (ed.) et al., Algebraic and combinatorial computational biology. Amsterdam: Elsevier/Academic Press. Math. Sci. Eng., 1-34 (2019). MSC: 92D20 05C90 PDF BibTeX XML Cite \textit{J. Jungck} et al., in: Algebraic and combinatorial computational biology. Amsterdam: Elsevier/Academic Press. 1--34 (2019; Zbl 1409.92183) Full Text: DOI
Tahir, Muhammad; Tayara, Hilal; Chong, Kil To iRNA-PseKNC(2methyl): identify RNA 2’-O-methylation sites by convolution neural network and Chou’s pseudo components. (English) Zbl 1406.92217 J. Theor. Biol. 465, 1-6 (2019). MSC: 92C40 68T05 92D20 PDF BibTeX XML Cite \textit{M. Tahir} et al., J. Theor. Biol. 465, 1--6 (2019; Zbl 1406.92217) Full Text: DOI
Wasik, Szymon; Szostak, Natalia; Kudla, Mateusz; Wachowiak, Michal; Krawiec, Krzysztof; Blazewicz, Jacek Detecting life signatures with RNA sequence similarity measures. (English) Zbl 1406.92475 J. Theor. Biol. 463, 110-120 (2019). MSC: 92D20 92D10 PDF BibTeX XML Cite \textit{S. Wasik} et al., J. Theor. Biol. 463, 110--120 (2019; Zbl 1406.92475) Full Text: DOI
Doluca, Osman G4Catchall: A G-quadruplex prediction approach considering atypical features. (English) Zbl 1406.92453 J. Theor. Biol. 463, 92-98 (2019). MSC: 92D20 62P10 PDF BibTeX XML Cite \textit{O. Doluca}, J. Theor. Biol. 463, 92--98 (2019; Zbl 1406.92453) Full Text: DOI
Belitsky, V.; Schütz, G. M. RNA polymerase interactions and elongation rate. (English) Zbl 1406.92170 J. Theor. Biol. 462, 370-380 (2019). MSC: 92C40 PDF BibTeX XML Cite \textit{V. Belitsky} and \textit{G. M. Schütz}, J. Theor. Biol. 462, 370--380 (2019; Zbl 1406.92170) Full Text: DOI
Wang, Lei; Yan, Xin; Liu, Meng-Lin; Song, Ke-Jian; Sun, Xiao-Fei; Pan, Wen-Wen Prediction of RNA-protein interactions by combining deep convolutional neural network with feature selection ensemble method. (English) Zbl 1406.92220 J. Theor. Biol. 461, 230-238 (2019). MSC: 92C40 62P10 68T05 PDF BibTeX XML Cite \textit{L. Wang} et al., J. Theor. Biol. 461, 230--238 (2019; Zbl 1406.92220) Full Text: DOI
Fornés, Joan; Tomás Lázaro, J.; Alarcón, Tomás; Elena, Santiago F.; Sardanyés, Josep Viral replication modes in single-peak fitness landscapes: a dynamical systems analysis. (English) Zbl 1406.92425 J. Theor. Biol. 460, 170-183 (2019). MSC: 92D15 92D10 37N25 PDF BibTeX XML Cite \textit{J. Fornés} et al., J. Theor. Biol. 460, 170--183 (2019; Zbl 1406.92425) Full Text: DOI
Chang, Yi-Jun Hardness of RNA folding problem with four symbols. (English) Zbl 1405.92211 Theor. Comput. Sci. 757, 11-26 (2019). MSC: 92D20 68Q17 PDF BibTeX XML Cite \textit{Y.-J. Chang}, Theor. Comput. Sci. 757, 11--26 (2019; Zbl 1405.92211) Full Text: DOI
Anderson, Nicole; Breunig, Michael; Goryl, Kyle; Lewis, Hannah; Riehl, Manda; Scanlan, McKenzie Properties of RNA secondary structure matching models. (English) Zbl 1403.92198 Involve 12, No. 2, 257-280 (2019). MSC: 92D20 05C90 PDF BibTeX XML Cite \textit{N. Anderson} et al., Involve 12, No. 2, 257--280 (2019; Zbl 1403.92198) Full Text: DOI
Ahmed, Syed Ali; Farhat, Saman; Mneimneh, Saad Making multiple RNA interaction practical. (English) Zbl 07116412 Kim, Donghyun (ed.) et al., Combinatorial optimization and applications. 12th international conference, COCOA 2018, Atlanta, GA, USA, December 15–17, 2018. Proceedings. Cham: Springer (ISBN 978-3-030-04650-7/pbk; 978-3-030-04651-4/ebook). Lecture Notes in Computer Science 11346, 651-671 (2018). MSC: 68T20 90C27 PDF BibTeX XML Cite \textit{S. A. Ahmed} et al., Lect. Notes Comput. Sci. 11346, 651--671 (2018; Zbl 07116412) Full Text: DOI
Alnasir, Jamie J.; Shanahan, Hugh P. Transcriptomics: quantifying non-uniform read distribution using MapReduce. (English) Zbl 1416.92127 Int. J. Found. Comput. Sci. 29, No. 8, 1355-1372 (2018). MSC: 92D20 PDF BibTeX XML Cite \textit{J. J. Alnasir} and \textit{H. P. Shanahan}, Int. J. Found. Comput. Sci. 29, No. 8, 1355--1372 (2018; Zbl 1416.92127) Full Text: DOI
Teixeira, Andreia Sofia; Fernandes, Francisco; Francisco, Alexandre P. SpliceTAPyR – an efficient method for transcriptome alignment. (English) Zbl 1415.92140 Int. J. Found. Comput. Sci. 29, No. 8, 1297-1310 (2018). MSC: 92D20 68W32 PDF BibTeX XML Cite \textit{A. S. Teixeira} et al., Int. J. Found. Comput. Sci. 29, No. 8, 1297--1310 (2018; Zbl 1415.92140) Full Text: DOI
Olteanu, Mircea; Ştefan, Radu A note on the stability analysis of a class of nonlinear systems – an LMI approach. (English) Zbl 1424.34155 Sci. Bull., Ser. A, Appl. Math. Phys., Politeh. Univ. Buchar. 80, No. 3, 3-10 (2018). MSC: 34C60 34D23 34D20 34C05 PDF BibTeX XML Cite \textit{M. Olteanu} and \textit{R. Ştefan}, Sci. Bull., Ser. A, Appl. Math. Phys., Politeh. Univ. Buchar. 80, No. 3, 3--10 (2018; Zbl 1424.34155)
von Stechow, Louise (ed.); Delgado, Alberto Santos (ed.) Computational cell biology. Methods and protocols. (English) Zbl 1417.92006 Methods in Molecular Biology 1819. Springer Protocols. New York, NY: Humana Press (ISBN 978-1-4939-8617-0/hbk; 978-1-4939-8618-7/ebook). xi, 436 p. (2018). Reviewer: Irina Ioana Mohorianu (Oxford) MSC: 92-06 92C42 92C40 92C37 92-08 PDF BibTeX XML Cite \textit{L. von Stechow} (ed.) and \textit{A. S. Delgado} (ed.), Computational cell biology. Methods and protocols. New York, NY: Humana Press (2018; Zbl 1417.92006) Full Text: DOI
Chiu, Jimmy Ka Ho; Dillon, Tharam S.; Chen, Yi-Ping Phoebe Large-scale frequent stem pattern mining in RNA families. (English) Zbl 1406.92451 J. Theor. Biol. 455, 131-139 (2018). MSC: 92D20 PDF BibTeX XML Cite \textit{J. K. H. Chiu} et al., J. Theor. Biol. 455, 131--139 (2018; Zbl 1406.92451) Full Text: DOI
Fumagalli, Maria Rita; Zapperi, Stefano; La Porta, Caterina A. M. Impact of the cross-talk between circular and messenger RNAs on cell regulation. (English) Zbl 1406.92269 J. Theor. Biol. 454, 386-395 (2018). MSC: 92C45 92C40 PDF BibTeX XML Cite \textit{M. R. Fumagalli} et al., J. Theor. Biol. 454, 386--395 (2018; Zbl 1406.92269) Full Text: DOI
El-Sharkasy, M. M. Topological model for recombination of DNA and RNA. (English) Zbl 1405.92214 Int. J. Biomath. 11, No. 8, Article ID 1850097, 15 p. (2018). MSC: 92D20 92C40 54A05 PDF BibTeX XML Cite \textit{M. M. El-Sharkasy}, Int. J. Biomath. 11, No. 8, Article ID 1850097, 15 p. (2018; Zbl 1405.92214) Full Text: DOI
Abboud, Amir; Backurs, Arturs; Williams, Virginia Vassilevska If the current clique algorithms are optimal, so is Valiant’s parser. (English) Zbl 1412.68094 SIAM J. Comput. 47, No. 6, 2527-2555 (2018). Reviewer: Andreas Maletti (Leipzig) MSC: 68Q42 05C69 68Q17 68Q25 68Q45 92D20 PDF BibTeX XML Cite \textit{A. Abboud} et al., SIAM J. Comput. 47, No. 6, 2527--2555 (2018; Zbl 1412.68094) Full Text: DOI
Zhao, Lili; Wu, Weisheng; Feng, Dai; Jiang, Hui; Nguyen, Xuanlong Bayesian analysis of RNA-Seq data using a family of negative binomial models. (English) Zbl 1407.62414 Bayesian Anal. 13, No. 2, 411-436 (2018). MSC: 62P10 62F15 92D20 PDF BibTeX XML Cite \textit{L. Zhao} et al., Bayesian Anal. 13, No. 2, 411--436 (2018; Zbl 1407.62414) Full Text: DOI Euclid
Mueller, Jonas; Jaakkola, Tommi; Gifford, David Modeling persistent trends in distributions. (English) Zbl 1402.62074 J. Am. Stat. Assoc. 113, No. 523, 1296-1310 (2018). MSC: 62G08 62P10 PDF BibTeX XML Cite \textit{J. Mueller} et al., J. Am. Stat. Assoc. 113, No. 523, 1296--1310 (2018; Zbl 1402.62074) Full Text: DOI
El-Sharkasy, M. M.; Fouda, Wafaa M.; Badr, Mohamed S. Multiset topology via DNA and RNA mutation. (English) Zbl 1407.92080 Math. Methods Appl. Sci. 41, No. 15, 5820-5832 (2018). MSC: 92D10 92D20 54A10 92-04 PDF BibTeX XML Cite \textit{M. M. El-Sharkasy} et al., Math. Methods Appl. Sci. 41, No. 15, 5820--5832 (2018; Zbl 1407.92080) Full Text: DOI
Barrera-Cruz, Fidel; Heitsch, Christine; Poznanović, Svetlana On the structure of RNA branching polytopes. (English) Zbl 1401.92153 SIAM J. Appl. Algebra Geom. 2, No. 3, 444-461 (2018). MSC: 92D20 PDF BibTeX XML Cite \textit{F. Barrera-Cruz} et al., SIAM J. Appl. Algebra Geom. 2, No. 3, 444--461 (2018; Zbl 1401.92153) Full Text: DOI
Dadaneh, Siamak Zamani; Qian, Xiaoning; Zhou, Mingyuan BNP-seq: Bayesian nonparametric differential expression analysis of sequencing count data. (English) Zbl 1398.62337 J. Am. Stat. Assoc. 113, No. 521, 81-94 (2018). MSC: 62P10 62G05 PDF BibTeX XML Cite \textit{S. Z. Dadaneh} et al., J. Am. Stat. Assoc. 113, No. 521, 81--94 (2018; Zbl 1398.62337) Full Text: DOI
Mohammed, Abdulmelik; Orponen, Pekka; Pai, Sachith Algorithmic design of cotranscriptionally folding 2D RNA origami structures. (English) Zbl 06958393 Stepney, Susan (ed.) et al., Unconventional computation and natural computation. 17th international conference, UCNC 2018, Fontainebleau, France, June 25–29, 2018. Proceedings. Cham: Springer (ISBN 978-3-319-92434-2/pbk; 978-3-319-92435-9/ebook). Lecture Notes in Computer Science 10867, 159-172 (2018). MSC: 68Q05 68Q10 PDF BibTeX XML Cite \textit{A. Mohammed} et al., Lect. Notes Comput. Sci. 10867, 159--172 (2018; Zbl 06958393) Full Text: DOI
Sossinsky, A. B. Normal forms of unknotted ribbons and DNA. (English) Zbl 1397.92539 Russ. J. Math. Phys. 25, No. 2, 241-247 (2018). MSC: 92D20 57M25 PDF BibTeX XML Cite \textit{A. B. Sossinsky}, Russ. J. Math. Phys. 25, No. 2, 241--247 (2018; Zbl 1397.92539) Full Text: DOI
Cellerino, Alessandro; Sanguanini, Michele Transcriptome analysis. Introduction and examples from the neurosciences. (English) Zbl 1398.92001 Appunti. Scuola Normale Superiore di Pisa (Nuova Serie) 17. Pisa: Edizioni della Normale (ISBN 978-88-7642-641-4/pbk; 978-88-7642-642-1/ebook). xiv, 185 p. (2018). Reviewer: Fatima T. Adylova (Tashkent) MSC: 92-02 92C20 05C90 92D20 92C40 PDF BibTeX XML Cite \textit{A. Cellerino} and \textit{M. Sanguanini}, Transcriptome analysis. Introduction and examples from the neurosciences. Pisa: Edizioni della Normale (2018; Zbl 1398.92001) Full Text: DOI
Zhu, Lingxue; Lei, Jing; Devlin, Bernie; Roeder, Kathryn A unified statistical framework for single cell and bulk RNA sequencing data. (English) Zbl 1393.62120 Ann. Appl. Stat. 12, No. 1, 609-632 (2018). MSC: 62P10 62J12 92D20 PDF BibTeX XML Cite \textit{L. Zhu} et al., Ann. Appl. Stat. 12, No. 1, 609--632 (2018; Zbl 1393.62120) Full Text: DOI Euclid
Li, Wei Vivian; Zhao, Anqi; Zhang, Shihua; Li, Jingyi Jessica MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification. (English) Zbl 1393.62078 Ann. Appl. Stat. 12, No. 1, 510-539 (2018). MSC: 62P10 62F15 62J15 PDF BibTeX XML Cite \textit{W. V. Li} et al., Ann. Appl. Stat. 12, No. 1, 510--539 (2018; Zbl 1393.62078) Full Text: DOI Euclid
Sabooh, M. Fazli; Iqbal, Nadeem; Khan, Mukhtaj; Khan, Muslim; Maqbool, H. F. Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou’s PseKNC. (English) Zbl 1397.92232 J. Theor. Biol. 452, 1-9 (2018). MSC: 92C40 PDF BibTeX XML Cite \textit{M. F. Sabooh} et al., J. Theor. Biol. 452, 1--9 (2018; Zbl 1397.92232) Full Text: DOI
Walter Costa, Maria Beatriz; Höner zu Siederdissen, Christian; Tulpan, Dan; Stadler, Peter F.; Nowick, Katja Temporal ordering of substitutions in RNA evolution: uncovering the structural evolution of the Human Accelerated Region 1. (English) Zbl 1394.92100 J. Theor. Biol. 438, 143-150 (2018). MSC: 92D20 92D15 92-08 PDF BibTeX XML Cite \textit{M. B. Walter Costa} et al., J. Theor. Biol. 438, 143--150 (2018; Zbl 1394.92100) Full Text: DOI
Dasmeh, Pouria Multi-step regulation of transcription kinetics explains the non-linear relation between RNA polymerase II density and mrna expression in dosage compensation. (English) Zbl 1394.92051 J. Theor. Biol. 438, 92-95 (2018). MSC: 92C45 PDF BibTeX XML Cite \textit{P. Dasmeh}, J. Theor. Biol. 438, 92--95 (2018; Zbl 1394.92051) Full Text: DOI
Qiu, Yumou; Chen, Song Xi; Nettleton, Dan Detecting rare and faint signals via thresholding maximum likelihood estimators. (English) Zbl 1392.62163 Ann. Stat. 46, No. 2, 895-923 (2018). MSC: 62H15 62G20 62G32 PDF BibTeX XML Cite \textit{Y. Qiu} et al., Ann. Stat. 46, No. 2, 895--923 (2018; Zbl 1392.62163) Full Text: DOI
El-Sharkasy, M. M.; Badr, M. S. Modeling DNA & RNA mutation using mset and topology. (English) Zbl 1390.92098 Int. J. Biomath. 11, No. 4, Article ID 1850058, 14 p. (2018). MSC: 92D20 54A10 54C50 54C10 PDF BibTeX XML Cite \textit{M. M. El-Sharkasy} and \textit{M. S. Badr}, Int. J. Biomath. 11, No. 4, Article ID 1850058, 14 p. (2018; Zbl 1390.92098) Full Text: DOI
Clote, Peter; Bayegan, Amir H. RNA folding kinetics using Monte Carlo and Gillespie algorithms. (English) Zbl 1392.92066 J. Math. Biol. 76, No. 5, 1195-1227 (2018). MSC: 92D20 60J22 68N19 65C05 PDF BibTeX XML Cite \textit{P. Clote} and \textit{A. H. Bayegan}, J. Math. Biol. 76, No. 5, 1195--1227 (2018; Zbl 1392.92066) Full Text: DOI
Yang, Tae Young; Jeong, Seongmun Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq. (English) Zbl 1390.62324 J. Korean Stat. Soc. 47, No. 1, 13-23 (2018). MSC: 62P10 92D20 PDF BibTeX XML Cite \textit{T. Y. Yang} and \textit{S. Jeong}, J. Korean Stat. Soc. 47, No. 1, 13--23 (2018; Zbl 1390.62324) Full Text: DOI
Imani, Mahdi; Braga-Neto, Ulisses M. Particle filters for partially-observed Boolean dynamical systems. (English) Zbl 1378.93126 Automatica 87, 238-250 (2018). MSC: 93E11 93E10 90B15 93C10 62M10 PDF BibTeX XML Cite \textit{M. Imani} and \textit{U. M. Braga-Neto}, Automatica 87, 238--250 (2018; Zbl 1378.93126) Full Text: DOI
Del Duca, Laura; Tripp, Jennifer; Tymoczko, Julianna; Wang, Judy RNA, local moves on plane trees, and transpositions on tableaux. (English) Zbl 1379.92044 Involve 11, No. 3, 383-411 (2018). MSC: 92D20 92E10 05A05 05C40 05C90 PDF BibTeX XML Cite \textit{L. Del Duca} et al., Involve 11, No. 3, 383--411 (2018; Zbl 1379.92044) Full Text: DOI
Xia, Wenjun; Lei, Jinzhi Formulation of the protein synthesis rate with sequence information. (English) Zbl 1375.92025 Math. Biosci. Eng. 15, No. 2, 507-522 (2018). MSC: 92C45 92C40 PDF BibTeX XML Cite \textit{W. Xia} and \textit{J. Lei}, Math. Biosci. Eng. 15, No. 2, 507--522 (2018; Zbl 1375.92025) Full Text: DOI
Mao, Shunfu; Mohajer, Soheil; Ramachandran, Kannan; Tse, David; Kannan, Sreeram abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation. (English) Zbl 1443.92143 Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 15, 14 p. (2017). MSC: 92D20 92-04 PDF BibTeX XML Cite \textit{S. Mao} et al., LIPIcs -- Leibniz Int. Proc. Inform. 88, Article 15, 14 p. (2017; Zbl 1443.92143) Full Text: DOI
Jabbari, Hosna; Wark, Ian; Montemagno, Carlo; Will, Sebastian Sparsification enables predicting kissing hairpin pseudoknot structures of long RNAs in practice. (English) Zbl 1443.92140 Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 12, 13 p. (2017). MSC: 92D20 92-08 PDF BibTeX XML Cite \textit{H. Jabbari} et al., LIPIcs -- Leibniz Int. Proc. Inform. 88, Article 12, 13 p. (2017; Zbl 1443.92140) Full Text: DOI
Gunady, Mohamed K.; Cornwell, Steffen; Mount, Stephen M.; Bravo, Héctor Corrada Yanagi: transcript segment library construction for RNA-seq quantification. (English) Zbl 1443.92139 Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 10, 14 p. (2017). MSC: 92D20 92-08 PDF BibTeX XML Cite \textit{M. K. Gunady} et al., LIPIcs -- Leibniz Int. Proc. Inform. 88, Article 10, 14 p. (2017; Zbl 1443.92139) Full Text: DOI
Bayegan, Amir H.; Clote, Peter An IP algorithm for RNA folding trajectories. (English) Zbl 1443.92135 Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 6, 16 p. (2017). MSC: 92D20 90C10 92-04 PDF BibTeX XML Cite \textit{A. H. Bayegan} and \textit{P. Clote}, LIPIcs -- Leibniz Int. Proc. Inform. 88, Article 6, 16 p. (2017; Zbl 1443.92135) Full Text: DOI
Jia, Bochao; Xu, Suwa; Xiao, Guanghua; Lamba, Vishal; Liang, Faming Learning gene regulatory networks from next generation sequencing data. (English) Zbl 1405.62180 Biometrics 73, No. 4, 1221-1230 (2017). MSC: 62P10 92D20 PDF BibTeX XML Cite \textit{B. Jia} et al., Biometrics 73, No. 4, 1221--1230 (2017; Zbl 1405.62180) Full Text: DOI
Kotoka, Ekua; Orr, Megan Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes. (English) Zbl 1396.92023 Stat. Appl. Genet. Mol. Biol. 16, No. 5-6, 291-312 (2017). MSC: 92C40 62P10 PDF BibTeX XML Cite \textit{E. Kotoka} and \textit{M. Orr}, Stat. Appl. Genet. Mol. Biol. 16, No. 5--6, 291--312 (2017; Zbl 1396.92023) Full Text: DOI
Tian, Wei; Lei, Xue; Kauffman, Louis H.; Liang, Jie A knot polynomial invariant for analysis of topology of RNA stems and protein disulfide bonds. (English) Zbl 1394.92099 Mol. Based Math. Biol. 5, 21-30 (2017). MSC: 92D20 57M25 PDF BibTeX XML Cite \textit{W. Tian} et al., Mol. Based Math. Biol. 5, 21--30 (2017; Zbl 1394.92099) Full Text: DOI
Zhu, Xiaohua; Wang, Ning Cuckoo search algorithm with RNA crossover operation for PID control of overhead cranes. (Chinese. English summary) Zbl 1399.90306 J. Zhejiang Univ., Eng. Sci. 51, No. 7, 1397-1404 (2017). MSC: 90C59 93C40 PDF BibTeX XML Cite \textit{X. Zhu} and \textit{N. Wang}, J. Zhejiang Univ., Eng. Sci. 51, No. 7, 1397--1404 (2017; Zbl 1399.90306) Full Text: DOI
Tupper, Andrew S; Higgs, Paul G Error thresholds for RNA replication in the presence of both point mutations and premature termination errors. (English) Zbl 1382.92136 J. Theor. Biol. 428, 34-42 (2017). MSC: 92C40 PDF BibTeX XML Cite \textit{A. S Tupper} and \textit{P. G Higgs}, J. Theor. Biol. 428, 34--42 (2017; Zbl 1382.92136) Full Text: DOI
Li, Chengxian; Liu, Haihong; Zhang, Tonghua; Yan, Fang Hopf bifurcation analysis of a gene regulatory network mediated by small noncoding RNA with time delays and diffusion. (English) Zbl 1378.92018 Int. J. Bifurcation Chaos Appl. Sci. Eng. 27, No. 13, Article ID 1750194, 22 p. (2017). MSC: 92C40 92C42 35B32 35K57 PDF BibTeX XML Cite \textit{C. Li} et al., Int. J. Bifurcation Chaos Appl. Sci. Eng. 27, No. 13, Article ID 1750194, 22 p. (2017; Zbl 1378.92018) Full Text: DOI
Rogers, Trent A.; Seki, Shinnosuke Oritatami system; a survey and the impossibility of simple simulation at small delays. (English) Zbl 1382.92211 Fundam. Inform. 154, No. 1-4, 359-372 (2017). MSC: 92D20 68Q05 PDF BibTeX XML Cite \textit{T. A. Rogers} and \textit{S. Seki}, Fundam. Inform. 154, No. 1--4, 359--372 (2017; Zbl 1382.92211) Full Text: DOI
Ma, Ping; Zhang, Nan; Huang, Jianhua Z.; Zhong, Wenxuan Adaptive basis selection for exponential family smoothing splines with application in joint modeling of multiple sequencing samples. (English) Zbl 1392.62324 Stat. Sin. 27, No. 4, 1757-1777 (2017). MSC: 62P10 62J12 62G08 PDF BibTeX XML Cite \textit{P. Ma} et al., Stat. Sin. 27, No. 4, 1757--1777 (2017; Zbl 1392.62324) Full Text: DOI
Black, Francis; Drellich, Elizabeth; Tymoczko, Julianna Valid plane trees: combinatorial models for RNA secondary structures with Watson-Crick base pairs. (English) Zbl 1375.05053 SIAM J. Discrete Math. 31, No. 4, 2586-2602 (2017). MSC: 05C05 05C10 05C30 05C90 92C40 PDF BibTeX XML Cite \textit{F. Black} et al., SIAM J. Discrete Math. 31, No. 4, 2586--2602 (2017; Zbl 1375.05053) Full Text: DOI
Haleš, Jozef; Héliou, Alice; Maňuch, Ján; Ponty, Yann; Stacho, Ladislav Combinatorial RNA design: designability and structure-approximating algorithm in Watson-Crick and Nussinov-Jacobson energy models. (English) Zbl 1383.92058 Algorithmica 79, No. 3, 835-856 (2017). MSC: 92D20 90C27 PDF BibTeX XML Cite \textit{J. Haleš} et al., Algorithmica 79, No. 3, 835--856 (2017; Zbl 1383.92058) Full Text: DOI
Riley, Timothy Computing area in presentations of the trivial group. (English) Zbl 1439.20031 Proc. Am. Math. Soc. 145, No. 12, 5059-5069 (2017). MSC: 20F05 20F10 68W32 PDF BibTeX XML Cite \textit{T. Riley}, Proc. Am. Math. Soc. 145, No. 12, 5059--5069 (2017; Zbl 1439.20031) Full Text: DOI arXiv
Ingalls, Brian; Mincheva, Maya; Roussel, Marc R. Parametric sensitivity analysis of oscillatory delay systems with an application to gene regulation. (English) Zbl 1372.92029 Bull. Math. Biol. 79, No. 7, 1539-1563 (2017). MSC: 92C40 PDF BibTeX XML Cite \textit{B. Ingalls} et al., Bull. Math. Biol. 79, No. 7, 1539--1563 (2017; Zbl 1372.92029) Full Text: DOI
Lun, Aaron T. L.; Smyth, Gordon K. No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data. (English) Zbl 1371.92054 Stat. Appl. Genet. Mol. Biol. 16, No. 2, 83-93 (2017). MSC: 92C40 62P10 PDF BibTeX XML Cite \textit{A. T. L. Lun} and \textit{G. K. Smyth}, Stat. Appl. Genet. Mol. Biol. 16, No. 2, 83--93 (2017; Zbl 1371.92054) Full Text: DOI
Banerjee, Trambak; Mukherjee, Gourab; Radchenko, Peter Feature screening in large scale cluster analysis. (English) Zbl 06775878 J. Multivariate Anal. 161, 191-212 (2017). MSC: 62H PDF BibTeX XML Cite \textit{T. Banerjee} et al., J. Multivariate Anal. 161, 191--212 (2017; Zbl 06775878) Full Text: DOI
Pai, Priyadarshini P.; Dash, Tirtharaj; Mondal, Sukanta Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach. (English) Zbl 1369.92035 J. Theor. Biol. 418, 77-83 (2017). MSC: 92C40 62P10 PDF BibTeX XML Cite \textit{P. P. Pai} et al., J. Theor. Biol. 418, 77--83 (2017; Zbl 1369.92035) Full Text: DOI
Nemzer, Louis R. Shannon information entropy in the canonical genetic code. (English) Zbl 1368.92059 J. Theor. Biol. 415, 158-170 (2017). MSC: 92C40 94A17 PDF BibTeX XML Cite \textit{L. R. Nemzer}, J. Theor. Biol. 415, 158--170 (2017; Zbl 1368.92059) Full Text: DOI
Rybarczyk, Agnieszka; Hertz, Alain; Kasprzak, Marta; Blazewicz, Jacek Tabu search for the RNA partial degradation problem. (English) Zbl 1367.92037 Int. J. Appl. Math. Comput. Sci. 27, No. 2, 401-415 (2017). MSC: 92C40 90C27 PDF BibTeX XML Cite \textit{A. Rybarczyk} et al., Int. J. Appl. Math. Comput. Sci. 27, No. 2, 401--415 (2017; Zbl 1367.92037) Full Text: DOI
Li, Thomas J. X.; Reidys, Christian M. Statistics of topological RNA structures. (English) Zbl 1365.05020 J. Math. Biol. 74, No. 7, 1793-1821 (2017). MSC: 05A16 05A15 57M15 92E10 92B05 PDF BibTeX XML Cite \textit{T. J. X. Li} and \textit{C. M. Reidys}, J. Math. Biol. 74, No. 7, 1793--1821 (2017; Zbl 1365.05020) Full Text: DOI arXiv
Fu, Rong; Wang, Pei; Ma, Weiping; Taguchi, Ayumu; Wong, Chee-Hong; Zhang, Qing; Gazdar, Adi; Hanash, Samir M.; Zhou, Qinghua; Zhong, Hua; Feng, Ziding A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data. (English) Zbl 1366.62215 Biometrics 73, No. 1, 42-51 (2017). MSC: 62P10 92D20 62F03 PDF BibTeX XML Cite \textit{R. Fu} et al., Biometrics 73, No. 1, 42--51 (2017; Zbl 1366.62215) Full Text: DOI
Huang, Fenix; Reidys, Christian; Rezazadegan, Reza Fatgraph models of RNA structure. (English) Zbl 1360.92082 Mol. Based Math. Biol. 5, 1-20 (2017). MSC: 92D20 05C90 57M25 PDF BibTeX XML Cite \textit{F. Huang} et al., Mol. Based Math. Biol. 5, 1--20 (2017; Zbl 1360.92082) Full Text: DOI