Yelugam, Raghu; Brito da Silva, Leonardo Enzo; Wunsch, Donald C. II Topological biclustering ARTMAP for identifying within bicluster relationships. (English) Zbl 1525.92023 Neural Netw. 160, 34-49 (2023). MSC: 92C40 62P10 62R40 PDFBibTeX XMLCite \textit{R. Yelugam} et al., Neural Netw. 160, 34--49 (2023; Zbl 1525.92023) Full Text: DOI
Zhang, Jingfei; Li, Yi High-dimensional Gaussian graphical regression models with covariates. (English) Zbl 07751830 J. Am. Stat. Assoc. 118, No. 543, 2088-2100 (2023). MSC: 62-XX PDFBibTeX XMLCite \textit{J. Zhang} and \textit{Y. Li}, J. Am. Stat. Assoc. 118, No. 543, 2088--2100 (2023; Zbl 07751830) Full Text: DOI arXiv
Xue, Haoran; Shen, Xiaotong; Pan, Wei Causal inference in transcriptome-wide association studies with invalid instruments and GWAS summary data. (English) Zbl 07751783 J. Am. Stat. Assoc. 118, No. 543, 1525-1537 (2023). MSC: 62-XX PDFBibTeX XMLCite \textit{H. Xue} et al., J. Am. Stat. Assoc. 118, No. 543, 1525--1537 (2023; Zbl 07751783) Full Text: DOI
Yang, Zhen; Ho, Yen-Yi Modeling dynamic correlation in zero-inflated bivariate count data with applications to single-cell RNA sequencing data. (English) Zbl 1520.62388 Biometrics 78, No. 2, 766-776 (2022). MSC: 62P10 PDFBibTeX XMLCite \textit{Z. Yang} and \textit{Y.-Y. Ho}, Biometrics 78, No. 2, 766--776 (2022; Zbl 1520.62388) Full Text: DOI OA License
Li, Tong; Zhou, Tianjian; Tsui, Kam-Wah; Wei, Lin; Ji, Yuan Posterior contraction rate of sparse latent feature models with application to proteomics. (English) Zbl 07660285 Stat. Theory Relat. Fields 6, No. 1, 29-39 (2022). MSC: 62-XX PDFBibTeX XMLCite \textit{T. Li} et al., Stat. Theory Relat. Fields 6, No. 1, 29--39 (2022; Zbl 07660285) Full Text: DOI arXiv
Zhu, Yunlong Covariate-adjusted Gaussian graphical model estimation with false discovery rate control. (English) Zbl 07533589 Commun. Stat., Theory Methods 51, No. 4, 974-993 (2022). MSC: 62-XX PDFBibTeX XMLCite \textit{Y. Zhu}, Commun. Stat., Theory Methods 51, No. 4, 974--993 (2022; Zbl 07533589) Full Text: DOI
Hudson, Aaron; Shojaie, Ali Covariate-adjusted inference for differential analysis of high-dimensional networks. (English) Zbl 1490.62140 Sankhyā, Ser. A 84, No. 1, 345-388 (2022). MSC: 62H22 62J07 62P10 PDFBibTeX XMLCite \textit{A. Hudson} and \textit{A. Shojaie}, Sankhyā, Ser. A 84, No. 1, 345--388 (2022; Zbl 1490.62140) Full Text: DOI arXiv
Münch, Magnus M.; van de Wiel, Mark A.; Richardson, Sylvia; Leday, Gwenaël G. R. Drug sensitivity prediction with normal inverse Gaussian shrinkage informed by external data. (English) Zbl 1523.62172 Biom. J. 63, No. 2, 289-304 (2021). MSC: 62P10 PDFBibTeX XMLCite \textit{M. M. Münch} et al., Biom. J. 63, No. 2, 289--304 (2021; Zbl 1523.62172) Full Text: DOI OA License
Ling, Wodan; Zhang, Wenfei; Cheng, Bin; Wei, Ying Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis. (English) Zbl 1498.62233 Ann. Appl. Stat. 15, No. 4, 1673-1696 (2021). MSC: 62P10 62G10 62J05 62G08 PDFBibTeX XMLCite \textit{W. Ling} et al., Ann. Appl. Stat. 15, No. 4, 1673--1696 (2021; Zbl 1498.62233) Full Text: DOI
Wang, Y. X. Rachel; Li, Lexin; Li, Jingyi Jessica; Huang, Haiyan Network modeling in biology: statistical methods for gene and brain networks. (English) Zbl 07368221 Stat. Sci. 36, No. 1, 89-108 (2021). MSC: 62-XX PDFBibTeX XMLCite \textit{Y. X. R. Wang} et al., Stat. Sci. 36, No. 1, 89--108 (2021; Zbl 07368221) Full Text: DOI
Afzal, Arfan Raheen; Yang, Jing; Lu, Xuewen Variable selection in partially linear additive hazards model with grouped covariates and a diverging number of parameters. (English) Zbl 1505.62012 Comput. Stat. 36, No. 2, 829-855 (2021). MSC: 62-08 62G08 62G20 62P10 PDFBibTeX XMLCite \textit{A. R. Afzal} et al., Comput. Stat. 36, No. 2, 829--855 (2021; Zbl 1505.62012) Full Text: DOI
Li, Yunfan; Datta, Jyotishka; Craig, Bruce A.; Bhadra, Anindya Joint mean-covariance estimation via the horseshoe. (English) Zbl 1464.62354 J. Multivariate Anal. 183, Article ID 104716, 13 p. (2021). MSC: 62J15 62H12 62P10 PDFBibTeX XMLCite \textit{Y. Li} et al., J. Multivariate Anal. 183, Article ID 104716, 13 p. (2021; Zbl 1464.62354) Full Text: DOI arXiv
Otero, Marcelo; Sarno, Silvina N.; Acebedo, Sofía L.; Ramírez, Javier A. Tracing molecular properties throughout evolution: a chemoinformatic approach. (English) Zbl 1460.92079 J. Theor. Biol. 515, Article ID 110601, 10 p. (2021). MSC: 92C40 62P15 PDFBibTeX XMLCite \textit{M. Otero} et al., J. Theor. Biol. 515, Article ID 110601, 10 p. (2021; Zbl 1460.92079) Full Text: DOI DOI
He, Yinqiu; Xu, Gongjun; Wu, Chong; Pan, Wei Asymptotically independent U-statistics in high-dimensional testing. (English) Zbl 1461.62233 Ann. Stat. 49, No. 1, 154-181 (2021). MSC: 62R07 62F03 62F05 PDFBibTeX XMLCite \textit{Y. He} et al., Ann. Stat. 49, No. 1, 154--181 (2021; Zbl 1461.62233) Full Text: DOI arXiv Euclid
Akalin, Altuna [Franke, Verdan; Uyar, Bora; Ronen, Jonathan] Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen. (English) Zbl 1482.92002 Chapman & Hall/CRC Computational Biology Series. Boca Raton, FL: CRC Press (ISBN 978-1-4987-8185-5/hbk; 978-0-367-63460-5/pbk; 978-0-429-08431-7/ebook). xxii, 440 p. (2021). Reviewer: Irina Ioana Mohorianu (Oxford) MSC: 92-02 92D10 62P10 PDFBibTeX XMLCite \textit{A. Akalin}, Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen. Boca Raton, FL: CRC Press (2021; Zbl 1482.92002) Full Text: DOI
Baek, Seungchul; Ho, Yen-Yi; Ma, Yanyuan Using sufficient direction factor model to analyze latent activities associated with breast cancer survival. (English) Zbl 1520.62129 Biometrics 76, No. 4, 1340-1350 (2020). MSC: 62P10 PDFBibTeX XMLCite \textit{S. Baek} et al., Biometrics 76, No. 4, 1340--1350 (2020; Zbl 1520.62129) Full Text: DOI
Li, Jinyu; Lai, Yutong; Zhang, Chi; Zhang, Qi TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework. (English) Zbl 1521.62385 J. Appl. Stat. 47, No. 6, 1064-1083 (2020). MSC: 62-XX PDFBibTeX XMLCite \textit{J. Li} et al., J. Appl. Stat. 47, No. 6, 1064--1083 (2020; Zbl 1521.62385) Full Text: DOI
Peng, Si; Shen, Xiaotong; Pan, Wei Reconstruction of a directed acyclic graph with intervention. (English) Zbl 1455.62031 Electron. J. Stat. 14, No. 2, 4133-4164 (2020). MSC: 62A09 62H22 05C90 PDFBibTeX XMLCite \textit{S. Peng} et al., Electron. J. Stat. 14, No. 2, 4133--4164 (2020; Zbl 1455.62031) Full Text: DOI Euclid
Wu, Chong; Xu, Gongjun; Shen, Xiaotong; Pan, Wei A regularization-based adaptive test for high-dimensional GLMs. (English) Zbl 1517.62066 J. Mach. Learn. Res. 21, Paper No. 128, 67 p. (2020). MSC: 62H15 62-04 62J12 62P10 68T05 PDFBibTeX XMLCite \textit{C. Wu} et al., J. Mach. Learn. Res. 21, Paper No. 128, 67 p. (2020; Zbl 1517.62066) Full Text: Link
Li, Chunlin; Shen, Xiaotong; Pan, Wei Likelihood ratio tests for a large directed acyclic graph. (English) Zbl 1441.62249 J. Am. Stat. Assoc. 115, No. 531, 1304-1319 (2020). MSC: 62M30 62P10 PDFBibTeX XMLCite \textit{C. Li} et al., J. Am. Stat. Assoc. 115, No. 531, 1304--1319 (2020; Zbl 1441.62249) Full Text: DOI Link
Wang, Yuhao; Segarra, Santiago; Uhler, Caroline High-dimensional joint estimation of multiple directed Gaussian graphical models. (English) Zbl 1445.62046 Electron. J. Stat. 14, No. 1, 2439-2483 (2020). MSC: 62F12 62F30 62H22 62P10 05C90 PDFBibTeX XMLCite \textit{Y. Wang} et al., Electron. J. Stat. 14, No. 1, 2439--2483 (2020; Zbl 1445.62046) Full Text: DOI arXiv Euclid
Peeters, Carel F. W.; van de Wiel, Mark A.; van Wieringen, Wessel N. The spectral condition number plot for regularization parameter evaluation. (English) Zbl 1482.62016 Comput. Stat. 35, No. 2, 629-646 (2020). MSC: 62-08 62A09 PDFBibTeX XMLCite \textit{C. F. W. Peeters} et al., Comput. Stat. 35, No. 2, 629--646 (2020; Zbl 1482.62016) Full Text: DOI arXiv
van Wieringen, Wessel N.; Stam, Koen A.; Peeters, Carel F. W.; van de Wiel, Mark A. Updating of the Gaussian graphical model through targeted penalized estimation. (English) Zbl 1440.62211 J. Multivariate Anal. 178, Article ID 104621, 13 p. (2020). MSC: 62H12 62H22 62J07 62M05 62P10 PDFBibTeX XMLCite \textit{W. N. van Wieringen} et al., J. Multivariate Anal. 178, Article ID 104621, 13 p. (2020; Zbl 1440.62211) Full Text: DOI
van Wieringen, Wessel N. The generalized ridge estimator of the inverse covariance matrix. (English) Zbl 07499037 J. Comput. Graph. Stat. 28, No. 4, 932-942 (2019). MSC: 62-XX PDFBibTeX XMLCite \textit{W. N. van Wieringen}, J. Comput. Graph. Stat. 28, No. 4, 932--942 (2019; Zbl 07499037) Full Text: DOI
Poterie, A.; Dupuy, J.-F.; Monbet, V.; Rouvière, L. Classification tree algorithm for grouped variables. (English) Zbl 1505.62323 Comput. Stat. 34, No. 4, 1613-1648 (2019). MSC: 62-08 62H30 PDFBibTeX XMLCite \textit{A. Poterie} et al., Comput. Stat. 34, No. 4, 1613--1648 (2019; Zbl 1505.62323) Full Text: DOI HAL
Wang, Shulei; Yuan, Ming Combined hypothesis testing on graphs with applications to gene set enrichment analysis. (English) Zbl 1428.62482 J. Am. Stat. Assoc. 114, No. 527, 1320-1338 (2019). MSC: 62P10 62F03 62J15 PDFBibTeX XMLCite \textit{S. Wang} and \textit{M. Yuan}, J. Am. Stat. Assoc. 114, No. 527, 1320--1338 (2019; Zbl 1428.62482) Full Text: DOI arXiv
de Campos, Luis M.; Cano, Andrés; Castellano, Javier G.; Moral, Serafín Combining gene expression data and prior knowledge for inferring gene regulatory networks via Bayesian networks using structural restrictions. (English) Zbl 1420.92019 Stat. Appl. Genet. Mol. Biol. 18, No. 3, Article ID 20180042, 14 p. (2019). MSC: 92C40 92C42 62P10 62F15 PDFBibTeX XMLCite \textit{L. M. de Campos} et al., Stat. Appl. Genet. Mol. Biol. 18, No. 3, Article ID 20180042, 14 p. (2019; Zbl 1420.92019) Full Text: DOI Link
Yu, Xinghao; Xiao, Lishun; Zeng, Ping; Huang, Shuiping Jackknife model averaging prediction methods for complex phenotypes with gene expression levels by integrating external pathway information. (English) Zbl 1423.92063 Comput. Math. Methods Med. 2019, Article ID 2807470, 8 p. (2019). MSC: 92C40 62P10 62F40 PDFBibTeX XMLCite \textit{X. Yu} et al., Comput. Math. Methods Med. 2019, Article ID 2807470, 8 p. (2019; Zbl 1423.92063) Full Text: DOI
Lee, JungJun; Kim, SungHwan; Jhong, Jae-Hwan; Koo, Ja-Yong Variable selection and joint estimation of mean and covariance models with an application to eQTL data. (English) Zbl 1411.92198 Comput. Math. Methods Med. 2018, Article ID 4626307, 13 p. (2018). MSC: 92D10 62P10 92-04 PDFBibTeX XMLCite \textit{J. Lee} et al., Comput. Math. Methods Med. 2018, Article ID 4626307, 13 p. (2018; Zbl 1411.92198) Full Text: DOI
Luo, Xiangyu; Wei, Yingying Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks. (English) Zbl 1405.62189 Ann. Appl. Stat. 12, No. 3, 1749-1772 (2018). MSC: 62P10 62F15 62H12 92D20 PDFBibTeX XMLCite \textit{X. Luo} and \textit{Y. Wei}, Ann. Appl. Stat. 12, No. 3, 1749--1772 (2018; Zbl 1405.62189) Full Text: DOI Euclid
Franks, Alexander M.; Markowetz, Florian; Airoldi, Edoardo M. Refining cellular pathway models using an ensemble of heterogeneous data sources. (English) Zbl 1405.62174 Ann. Appl. Stat. 12, No. 3, 1361-1384 (2018). MSC: 62P10 62F15 PDFBibTeX XMLCite \textit{A. M. Franks} et al., Ann. Appl. Stat. 12, No. 3, 1361--1384 (2018; Zbl 1405.62174) Full Text: DOI arXiv Euclid
Yang, Eunho; Lozano, Aurélie C.; Aravkin, Aleksandr A general family of trimmed estimators for robust high-dimensional data analysis. (English) Zbl 1496.62121 Electron. J. Stat. 12, No. 2, 3519-3553 (2018). MSC: 62J07 62F35 62H12 62H22 62P10 PDFBibTeX XMLCite \textit{E. Yang} et al., Electron. J. Stat. 12, No. 2, 3519--3553 (2018; Zbl 1496.62121) Full Text: DOI arXiv Euclid
Esteves, Gustavo H.; Reis, Luiz F. L. A statistical method for measuring activation of gene regulatory networks. (English) Zbl 1398.92088 Stat. Appl. Genet. Mol. Biol. 17, No. 3, Article ID 20160059, 11 p. (2018). MSC: 92C42 92C40 62P10 62F03 PDFBibTeX XMLCite \textit{G. H. Esteves} and \textit{L. F. L. Reis}, Stat. Appl. Genet. Mol. Biol. 17, No. 3, Article ID 20160059, 11 p. (2018; Zbl 1398.92088) Full Text: DOI
Sun, Jiehuan; Herazo-Maya, Jose D.; Huang, Xiu; Kaminski, Naftali; Zhao, Hongyu Distance-correlation based gene set analysis in longitudinal studies. (English) Zbl 1398.92162 Stat. Appl. Genet. Mol. Biol. 17, No. 1, Article ID 20170053, 11 p. (2018). MSC: 92D10 62P10 92C40 PDFBibTeX XMLCite \textit{J. Sun} et al., Stat. Appl. Genet. Mol. Biol. 17, No. 1, Article ID 20170053, 11 p. (2018; Zbl 1398.92162) Full Text: DOI arXiv
Lin, Zhixiang; Wang, Tao; Yang, Can; Zhao, Hongyu On joint estimation of Gaussian graphical models for spatial and temporal data. (English) Zbl 1522.62179 Biometrics 73, No. 3, 769-779 (2017). MSC: 62P10 PDFBibTeX XMLCite \textit{Z. Lin} et al., Biometrics 73, No. 3, 769--779 (2017; Zbl 1522.62179) Full Text: DOI arXiv
Zeng, Bilin; Wen, Xuerong Meggie; Zhu, Lixing A link-free sparse group variable selection method for single-index model. (English) Zbl 1516.62696 J. Appl. Stat. 44, No. 13, 2388-2400 (2017). MSC: 62-XX PDFBibTeX XMLCite \textit{B. Zeng} et al., J. Appl. Stat. 44, No. 13, 2388--2400 (2017; Zbl 1516.62696) Full Text: DOI
Miok, Viktorian; Wilting, Saskia M.; van Wieringen, Wessel N. Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data. (English) Zbl 1357.62319 Biom. J. 59, No. 1, 172-191 (2017). MSC: 62P10 62M10 62F10 62-07 PDFBibTeX XMLCite \textit{V. Miok} et al., Biom. J. 59, No. 1, 172--191 (2017; Zbl 1357.62319) Full Text: DOI
Hasegawa, Takanori; Niida, Atsushi; Mori, Tomoya; Shimamura, Teppei; Yamaguchi, Rui; Miyano, Satoru; Akutsu, Tatsuya; Imoto, Seiya A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models. (English) Zbl 1468.62075 Comput. Stat. Data Anal. 94, 63-74 (2016). MSC: 62-08 62F15 62M20 62P10 PDFBibTeX XMLCite \textit{T. Hasegawa} et al., Comput. Stat. Data Anal. 94, 63--74 (2016; Zbl 1468.62075) Full Text: DOI
van Wieringen, Wessel N.; Peeters, Carel F. W. Ridge estimation of inverse covariance matrices from high-dimensional data. (English) Zbl 1466.62204 Comput. Stat. Data Anal. 103, 284-303 (2016). MSC: 62-08 PDFBibTeX XMLCite \textit{W. N. van Wieringen} and \textit{C. F. W. Peeters}, Comput. Stat. Data Anal. 103, 284--303 (2016; Zbl 1466.62204) Full Text: DOI arXiv
Mathé, Ewy (ed.); Davis, Sean (ed.) Statistical genomics. Methods and protocols. (English) Zbl 1346.92003 Methods in Molecular Biology 1418. New York, NY: Humana Press/Springer (ISBN 978-1-4939-3576-5/hbk; 978-1-4939-3578-9/ebook). xi, 418 p. (2016). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-02 92B15 92D10 62P10 62B15 62F15 62K05 PDFBibTeX XMLCite \textit{E. Mathé} (ed.) and \textit{S. Davis} (ed.), Statistical genomics. Methods and protocols. New York, NY: Humana Press/Springer (2016; Zbl 1346.92003) Full Text: DOI
Yang, Tae Young A GS-CORE algorithm for performing a reduction test on multiple gene sets and their core genes. (English) Zbl 1342.65072 Comput. Stat. 30, No. 1, 29-41 (2015). MSC: 62-08 62P10 PDFBibTeX XMLCite \textit{T. Y. Yang}, Comput. Stat. 30, No. 1, 29--41 (2015; Zbl 1342.65072) Full Text: DOI
Thorne, Thomas Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data. (English) Zbl 1330.92013 Stat. Appl. Genet. Mol. Biol. 14, No. 6, 575-583 (2015). MSC: 92B15 62C12 62P10 PDFBibTeX XMLCite \textit{T. Thorne}, Stat. Appl. Genet. Mol. Biol. 14, No. 6, 575--583 (2015; Zbl 1330.92013) Full Text: DOI Link
Djordjilović, Vera; Chiogna, Monica; Massa, M. Sofia; Romualdi, Chiara Graphical modeling for gene set analysis: a critical appraisal. (English) Zbl 1334.62010 Biom. J. 57, No. 5, 852-866 (2015). MSC: 62A09 62-07 62P10 92D10 PDFBibTeX XMLCite \textit{V. Djordjilović} et al., Biom. J. 57, No. 5, 852--866 (2015; Zbl 1334.62010) Full Text: DOI
van Wieringen, Wessel N.; van der Vaart, Aad W. Transcriptomic heterogeneity in cancer as a consequence of dysregulation of the gene-gene interaction network. (English) Zbl 1328.92049 Bull. Math. Biol. 77, No. 9, 1768-1786 (2015). MSC: 92D10 92C37 62P10 PDFBibTeX XMLCite \textit{W. N. van Wieringen} and \textit{A. W. van der Vaart}, Bull. Math. Biol. 77, No. 9, 1768--1786 (2015; Zbl 1328.92049) Full Text: DOI
Chekouo, Thierry; Stingo, Francesco C.; Doecke, James D.; Do, Kim-Anh miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer. (English) Zbl 1390.62241 Biometrics 71, No. 2, 428-438 (2015). MSC: 62P10 62N05 62F15 PDFBibTeX XMLCite \textit{T. Chekouo} et al., Biometrics 71, No. 2, 428--438 (2015; Zbl 1390.62241) Full Text: DOI Link
Chekouo, Thierry; Murua, Alejandro; Raffelsberger, Wolfgang The Gibbs-plaid biclustering model. (English) Zbl 1454.62316 Ann. Appl. Stat. 9, No. 3, 1643-1670 (2015). MSC: 62P10 PDFBibTeX XMLCite \textit{T. Chekouo} et al., Ann. Appl. Stat. 9, No. 3, 1643--1670 (2015; Zbl 1454.62316) Full Text: DOI arXiv Euclid
Lee, Juhee; Müller, Peter; Gulukota, Kamalakar; Ji, Yuan A Bayesian feature allocation model for tumor heterogeneity. (English) Zbl 1397.62457 Ann. Appl. Stat. 9, No. 2, 621-639 (2015). MSC: 62P10 62F15 PDFBibTeX XMLCite \textit{J. Lee} et al., Ann. Appl. Stat. 9, No. 2, 621--639 (2015; Zbl 1397.62457) Full Text: DOI arXiv Euclid
Wang, Zhishi; He, Qiuling; Larget, Bret; Newton, Michael A. A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis. (English) Zbl 1454.62417 Ann. Appl. Stat. 9, No. 1, 225-246 (2015). MSC: 62P10 PDFBibTeX XMLCite \textit{Z. Wang} et al., Ann. Appl. Stat. 9, No. 1, 225--246 (2015; Zbl 1454.62417) Full Text: DOI arXiv Euclid
Soneson, Charlotte; Fontes, Magnus Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings. (English) Zbl 1471.62188 Comput. Stat. Data Anal. 71, 588-598 (2014). MSC: 62-08 62P10 92D20 PDFBibTeX XMLCite \textit{C. Soneson} and \textit{M. Fontes}, Comput. Stat. Data Anal. 71, 588--598 (2014; Zbl 1471.62188) Full Text: DOI
Rockova, Veronika; Lesaffre, Emmanuel Incorporating grouping information in Bayesian variable selection with applications in genomics. (English) Zbl 1327.62156 Bayesian Anal. 9, No. 1, 221-258 (2014). MSC: 62F15 62J07 62P10 PDFBibTeX XMLCite \textit{V. Rockova} and \textit{E. Lesaffre}, Bayesian Anal. 9, No. 1, 221--258 (2014; Zbl 1327.62156) Full Text: DOI Euclid
Manitz, Juliane Statistical inference for propagation processes on complex networks. (English) Zbl 1447.92001 München: Dr. Hut; Göttingen: Univ. Göttingen (Diss.) (ISBN 978-3-8439-1668-4/pbk). xii, 188 p. (2014). MSC: 92-02 90-02 92C42 92D30 90B10 90B06 62P10 62P30 05C90 PDFBibTeX XMLCite \textit{J. Manitz}, Statistical inference for propagation processes on complex networks. München: Dr. Hut; Göttingen: Univ. Göttingen (Diss.) (2014; Zbl 1447.92001) Full Text: Link Link
Dørum, Guro; Snipen, Lars; Solheim, Margrete; Sæbø, Solve Rotation gene set testing for longitudinal expression data. (English) Zbl 1441.62330 Biom. J. 56, No. 6, 1055-1075 (2014). MSC: 62P10 PDFBibTeX XMLCite \textit{G. Dørum} et al., Biom. J. 56, No. 6, 1055--1075 (2014; Zbl 1441.62330) Full Text: DOI
Kügler, Philipp; Yang, Wei Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions. (English) Zbl 1300.92029 J. Math. Biol. 68, No. 7, 1757-1783 (2014). MSC: 92C40 62P10 92-08 60H10 PDFBibTeX XMLCite \textit{P. Kügler} and \textit{W. Yang}, J. Math. Biol. 68, No. 7, 1757--1783 (2014; Zbl 1300.92029) Full Text: DOI
Cao, Jing; Zhang, Song A Bayesian extension of the hypergeometric test for functional enrichment analysis. (English) Zbl 1419.62317 Biometrics 70, No. 1, 84-94 (2014). MSC: 62P10 62F15 92C40 92D10 PDFBibTeX XMLCite \textit{J. Cao} and \textit{S. Zhang}, Biometrics 70, No. 1, 84--94 (2014; Zbl 1419.62317) Full Text: DOI Link
Peterson, Christine; Vannucci, Marina; Karakas, Cemal; Choi, William; Ma, Lihua; Maletic-Savatic, Mirjana Inferring metabolic networks using the Bayesian adaptive graphical Lasso with informative priors. (English) Zbl 1326.92028 Stat. Interface 6, No. 4, 547-558 (2013). MSC: 92C42 62A09 62P10 62F15 62J07 PDFBibTeX XMLCite \textit{C. Peterson} et al., Stat. Interface 6, No. 4, 547--558 (2013; Zbl 1326.92028) Full Text: DOI
Airoldi, Edoardo M.; Wang, Xiaopei; Lin, Xiaodong Multi-way blockmodels for analyzing coordinated high-dimensional responses. (English) Zbl 1283.62215 Ann. Appl. Stat. 7, No. 4, 2431-2457 (2013). MSC: 62P10 92C40 65C60 PDFBibTeX XMLCite \textit{E. M. Airoldi} et al., Ann. Appl. Stat. 7, No. 4, 2431--2457 (2013; Zbl 1283.62215) Full Text: DOI arXiv Euclid
Boca, Simina M.; Céorrada Bravo, Héctor; Caffo, Brian; Leek, Jeffrey T.; Parmigiani, Giovanni A decision-theory approach to interpretable set analysis for high-dimensional data. (English) Zbl 1429.62496 Biometrics 69, No. 3, 614-623 (2013). MSC: 62P10 62J15 62C12 PDFBibTeX XMLCite \textit{S. M. Boca} et al., Biometrics 69, No. 3, 614--623 (2013; Zbl 1429.62496) Full Text: DOI Link
Kim, Sunkyung; Pan, Wei; Shen, Xiaotong Network-based penalized regression with application to genomic data. (English) Zbl 1429.62294 Biometrics 69, No. 3, 582-593 (2013). MSC: 62J05 62J07 62P10 PDFBibTeX XMLCite \textit{S. Kim} et al., Biometrics 69, No. 3, 582--593 (2013; Zbl 1429.62294) Full Text: DOI Link
Fontes, Magnus Statistical and knowledge supported visualization of multivariate data. (English) Zbl 1420.62262 Åström, Kalle (ed.) et al., Analysis for science, engineering and beyond. The tribute workshop in honour of Gunnar Sparr, Lund, Sweden, May 8–9, 2008. Berlin: Springer. Springer Proc. Math. 6, 143-173 (2012). MSC: 62H25 62-02 62-07 62A09 PDFBibTeX XMLCite \textit{M. Fontes}, Springer Proc. Math. 6, 143--173 (2012; Zbl 1420.62262) Full Text: DOI arXiv
Qu, Long; Nettleton, Dan; Dekkers, Jack C. M. A hierarchical semiparametric model for incorporating intergene information for analysis of genomic data. (English) Zbl 1259.62101 Biometrics 68, No. 4, 1168-1177 (2012). MSC: 62P10 62G08 92C40 92D10 65C60 PDFBibTeX XMLCite \textit{L. Qu} et al., Biometrics 68, No. 4, 1168--1177 (2012; Zbl 1259.62101) Full Text: DOI
Katenka, Natallia; Kolaczyk, Eric D. Inference and characterization of multi-attribute networks with application to computational biology. (English) Zbl 1254.92035 Ann. Appl. Stat. 6, No. 3, 1068-1094 (2012). MSC: 92C42 62H20 62P10 92C40 92-08 PDFBibTeX XMLCite \textit{N. Katenka} and \textit{E. D. Kolaczyk}, Ann. Appl. Stat. 6, No. 3, 1068--1094 (2012; Zbl 1254.92035) Full Text: DOI arXiv Euclid
Jacob, Laurent; Neuvial, Pierre; Dudoit, Sandrine More power via graph-structured tests for differential expression of gene networks. (English) Zbl 1243.62080 Ann. Appl. Stat. 6, No. 2, 561-600 (2012). MSC: 62H15 05C90 92C42 92C40 62P10 65C60 PDFBibTeX XMLCite \textit{L. Jacob} et al., Ann. Appl. Stat. 6, No. 2, 561--600 (2012; Zbl 1243.62080) Full Text: DOI arXiv Euclid
Wei, Peng; Pan, Wei Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor. (English) Zbl 1235.62031 Ann. Appl. Stat. 6, No. 1, 334-355 (2012). MSC: 62F15 92C42 92C40 92D10 62M40 65C40 62P10 65C60 PDFBibTeX XMLCite \textit{P. Wei} and \textit{W. Pan}, Ann. Appl. Stat. 6, No. 1, 334--355 (2012; Zbl 1235.62031) Full Text: DOI arXiv Euclid
Yin, Jianxin; Li, Hongzhe A sparse conditional Gaussian graphical model for analysis of genetical genomics data. (English) Zbl 1234.62151 Ann. Appl. Stat. 5, No. 4, 2630-2650 (2011). MSC: 62P10 05C90 92D10 62H12 65C05 92C40 PDFBibTeX XMLCite \textit{J. Yin} and \textit{H. Li}, Ann. Appl. Stat. 5, No. 4, 2630--2650 (2011; Zbl 1234.62151) Full Text: DOI arXiv
Stingo, Francesco C.; Chen, Yian A.; Tadesse, Mahlet G.; Vannucci, Marina Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes. (English) Zbl 1228.62150 Ann. Appl. Stat. 5, No. 3, 1978-2002 (2011). MSC: 62P10 92C40 62F15 65C40 62N01 PDFBibTeX XMLCite \textit{F. C. Stingo} et al., Ann. Appl. Stat. 5, No. 3, 1978--2002 (2011; Zbl 1228.62150) Full Text: DOI arXiv
Nikulin, Vladimir; Huang, Tian-Hsiang; Ng, Shu-Kay; Rathnayake, Suren I.; Mclachlan, Geoffrey J. A very fast algorithm for matrix factorization. (English) Zbl 1218.62068 Stat. Probab. Lett. 81, No. 7, 773-782 (2011). MSC: 62H99 62H30 15A23 62P10 PDFBibTeX XMLCite \textit{V. Nikulin} et al., Stat. Probab. Lett. 81, No. 7, 773--782 (2011; Zbl 1218.62068) Full Text: DOI arXiv
Jupiter, Daniel; Şahutoğlu, Jessica; Vanburen, Vincent TreeHugger: a new test for enrichment of gene ontology terms. (English) Zbl 1243.62133 INFORMS J. Comput. 22, No. 2, 210-221 (2010). MSC: 62P10 92D10 92C40 PDFBibTeX XMLCite \textit{D. Jupiter} et al., INFORMS J. Comput. 22, No. 2, 210--221 (2010; Zbl 1243.62133) Full Text: DOI
Li, Caiyan; Li, Hongzhe Variable selection and regression analysis for graph-structured covariates with an application to genomics. (English) Zbl 1202.62157 Ann. Appl. Stat. 4, No. 3, 1498-1516 (2010). MSC: 62P10 05C90 65C05 PDFBibTeX XMLCite \textit{C. Li} and \textit{H. Li}, Ann. Appl. Stat. 4, No. 3, 1498--1516 (2010; Zbl 1202.62157) Full Text: DOI arXiv
Friedman, Avner; Hu, Bei; Kao, Chiu-Yen Cell cycle control at the first restriction point and its effect on tissue growth. (English) Zbl 1202.92024 J. Math. Biol. 60, No. 6, 881-907 (2010). MSC: 92C37 93C95 35Q92 65C20 PDFBibTeX XMLCite \textit{A. Friedman} et al., J. Math. Biol. 60, No. 6, 881--907 (2010; Zbl 1202.92024) Full Text: DOI
Silva, Ricardo; Heller, Katherine; Ghahramani, Zoubin; Airoldi, Edoardo M. Ranking relations using analogies in biological and information networks. (English) Zbl 1194.62022 Ann. Appl. Stat. 4, No. 2, 615-644 (2010). MSC: 62F15 62P10 62P99 PDFBibTeX XMLCite \textit{R. Silva} et al., Ann. Appl. Stat. 4, No. 2, 615--644 (2010; Zbl 1194.62022) Full Text: DOI
Chen, Xi; Wang, Lily; Ishwaran, Hemant An integrative pathway-based clinical-genomic model for cancer survival prediction. (English) Zbl 1198.62158 Stat. Probab. Lett. 80, No. 17-18, 1313-1319 (2010). MSC: 62P10 92C50 62H25 PDFBibTeX XMLCite \textit{X. Chen} et al., Stat. Probab. Lett. 80, No. 17--18, 1313--1319 (2010; Zbl 1198.62158) Full Text: DOI
Pan, Wei; Xie, Benhuai; Shen, Xiaotong Incorporating predictor network in penalized regression with application to microarray data. (English) Zbl 1192.62235 Biometrics 66, No. 2, 474-484 (2010). MSC: 62P10 92C50 92C40 62J05 65C60 92C42 PDFBibTeX XMLCite \textit{W. Pan} et al., Biometrics 66, No. 2, 474--484 (2010; Zbl 1192.62235) Full Text: DOI Link
Shabalin, Andrey A.; Weigman, Victor J.; Perou, Charles M.; Nobel, Andrew B. Finding large average submatrices in high dimensional data. (English) Zbl 1196.62087 Ann. Appl. Stat. 3, No. 3, 985-1012 (2009). MSC: 62H30 62P10 92D10 65C60 PDFBibTeX XMLCite \textit{A. A. Shabalin} et al., Ann. Appl. Stat. 3, No. 3, 985--1012 (2009; Zbl 1196.62087) Full Text: DOI arXiv
Chou, I-Chun; Voit, Eberhard O. Recent developments in parameter estimation and structure identification of biochemical and genomic systems. (English) Zbl 1168.92019 Math. Biosci. 219, No. 2, 57-83 (2009). MSC: 92C40 92D10 93B30 62P10 PDFBibTeX XMLCite \textit{I-C. Chou} and \textit{E. O. Voit}, Math. Biosci. 219, No. 2, 57--83 (2009; Zbl 1168.92019) Full Text: DOI Link
Wu, Hongwei; Mao, Fenglou; Olman, Victor; Xu, Ying On application of directons to functional classification of genes in prokaryotes. (English) Zbl 1403.92159 Comput. Biol. Chem. 32, No. 3, 176-184 (2008). MSC: 92D10 62P10 PDFBibTeX XMLCite \textit{H. Wu} et al., Comput. Biol. Chem. 32, No. 3, 176--184 (2008; Zbl 1403.92159) Full Text: DOI
Montaner, David; Al-Shahrour, Fatima; Dopazo, Joaquin New trends in the analysis of functional genomic data. (English) Zbl 1308.92073 Bonilla, Luis L. (ed.) et al., Progress in industrial mathematics at ECMI 2006. Papers of the 14th European conference of the European Consortium for Mathematics in Industry, Leganés, Madrid, Spain, July 10–14, 2006. Berlin: Springer (ISBN 978-3-540-71991-5/hbk). Mathematics in Industry 12, 576-580 (2008). MSC: 92D10 92B15 62P10 PDFBibTeX XMLCite \textit{D. Montaner} et al., Math. Ind. 12, 576--580 (2008; Zbl 1308.92073) Full Text: DOI
Grzegorczyk, Marco; Husmeier, Dirk Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move. (English) Zbl 1470.62075 Mach. Learn. 71, No. 2-3, 265-305 (2008). MSC: 62H22 62P10 68T05 92C42 PDFBibTeX XMLCite \textit{M. Grzegorczyk} and \textit{D. Husmeier}, Mach. Learn. 71, No. 2--3, 265--305 (2008; Zbl 1470.62075) Full Text: DOI
Xie, Benhuai; Pan, Wei; Shen, Xiaotong Variable selection in penalized model-based clustering via regularization on grouped parameters. (English) Zbl 1146.62101 Biometrics 64, No. 3, 921-930 (2008). MSC: 62P10 62N02 92C50 65C60 PDFBibTeX XMLCite \textit{B. Xie} et al., Biometrics 64, No. 3, 921--930 (2008; Zbl 1146.62101) Full Text: DOI
Xie, Benhuai; Pan, Wei; Shen, Xiaotong Penalized model-based clustering. (English) Zbl 1135.62055 Electron. J. Stat. 2, 168-212 (2008). MSC: 62H30 62P10 PDFBibTeX XMLCite \textit{B. Xie} et al., Electron. J. Stat. 2, 168--212 (2008; Zbl 1135.62055) Full Text: DOI arXiv
Wei, Zhi; Li, Hongzhe A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data. (English) Zbl 1137.62081 Ann. Appl. Stat. 2, No. 1, 408-429 (2008). MSC: 62P10 92D10 62F40 62F30 65C60 PDFBibTeX XMLCite \textit{Z. Wei} and \textit{H. Li}, Ann. Appl. Stat. 2, No. 1, 408--429 (2008; Zbl 1137.62081) Full Text: DOI arXiv
Werhli, Adriano V.; Husmeier, Dirk Reconstructing gene regulatory networks with Bayesian networks by combining expression data with multiple sources of prior knowledge. (English) Zbl 1166.62373 Stat. Appl. Genet. Mol. Biol. 6, No. 1, Article No. 15 (2007). MSC: 62P10 92C40 65C40 62F15 PDFBibTeX XMLCite \textit{A. V. Werhli} and \textit{D. Husmeier}, Stat. Appl. Genet. Mol. Biol. 6, No. 1, Article No. 15 (2007; Zbl 1166.62373) Full Text: DOI Link
Imoto, Seiya; Higuchi, Tomoyuki; Goto, Takao; Miyano, Satoru Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks. (English) Zbl 1248.92024 Stat. Methodol. 3, No. 1, 1-16 (2006). MSC: 92C42 92C40 62P10 92D10 PDFBibTeX XMLCite \textit{S. Imoto} et al., Stat. Methodol. 3, No. 1, 1--16 (2006; Zbl 1248.92024) Full Text: DOI
Ko, Daijin; Xu, Wanyan; Windle, Brad Gene function classification using NCI-60 cell line gene expression profiles. (English) Zbl 1103.62109 Comput. Biol. Chem. 29, No. 6, 412-419 (2005). MSC: 62P10 92C40 92D10 PDFBibTeX XMLCite \textit{D. Ko} et al., Comput. Biol. Chem. 29, No. 6, 412--419 (2005; Zbl 1103.62109) Full Text: DOI
Rahnenführer, Jörg; Domingues, Francisco S.; Maydt, Jochen; Lengauer, Thomas Calculating the statistical significance of changes in pathway activity from gene expression data. (English) Zbl 1166.62363 Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 16 (2004). MSC: 62P10 92C40 92D10 PDFBibTeX XMLCite \textit{J. Rahnenführer} et al., Stat. Appl. Genet. Mol. Biol. 3, No. 1, Article 16 (2004; Zbl 1166.62363) Full Text: DOI Link
Cho, Kwang-Hyun; Shin, Sung-Young; Kim, Hyun-Woo; Wolkenhauer, Olaf; McFerran, Brian; Kolch, Walter Mathematical modeling of the influence of RKIP on the ERK signaling pathway. (English) Zbl 1112.92315 Priami, Corrado (ed.), Computational methods in systems biology. First international workshop, CMSB 2003, Rovereto, Italy, February 24–26, 2003. Proceedings. Berlin: Springer (ISBN 3-540-00605-2/pbk). Lect. Notes Comput. Sci. 2602, 127-141 (2003). MSC: 92C40 65C20 62P10 PDFBibTeX XMLCite \textit{K.-H. Cho} et al., Lect. Notes Comput. Sci. 2602, 127--141 (2003; Zbl 1112.92315) Full Text: Link