Weber, M.; Fackeldey, K. Computing the minimal rebinding effect included in a given kinetics. (English) Zbl 1317.82030 Multiscale Model. Simul. 12, No. 1, 318-334 (2014). MSC: 82C21 15A15 15A09 15A23 PDF BibTeX XML Cite \textit{M. Weber} and \textit{K. Fackeldey}, Multiscale Model. Simul. 12, No. 1, 318--334 (2014; Zbl 1317.82030) Full Text: DOI
Kasabov, Nikola (ed.) Springer handbook of bio-/neuro-informatics. (English) Zbl 1304.92001 Springer Handbooks. Dordrecht: Springer (ISBN 978-3-642-30573-3/hbk; 978-3-642-30574-0/ebook). lvii, 1229 p. (2014). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-00 92-06 00B15 92B20 92C40 92C50 92D10 68T05 92B25 92D20 92D15 92C20 PDF BibTeX XML Cite \textit{N. Kasabov} (ed.), Springer handbook of bio-/neuro-informatics. Dordrecht: Springer (2014; Zbl 1304.92001) Full Text: DOI
Noé, Frank; Nüske, Feliks A variational approach to modeling slow processes in stochastic dynamical systems. (English) Zbl 1306.65013 Multiscale Model. Simul. 11, No. 2, 635-655 (2013). Reviewer: Anatoly N. Kochubei (Kyïv) MSC: 65C50 60H35 60J25 PDF BibTeX XML Cite \textit{F. Noé} and \textit{F. Nüske}, Multiscale Model. Simul. 11, No. 2, 635--655 (2013; Zbl 1306.65013) Full Text: DOI arXiv
Fackeldey, Konstantin; Bujotzek, Alexander; Weber, Marcus A meshless discretization method for Markov state models applied to explicit water peptide folding simulations. (English) Zbl 1269.82072 Griebel, Michael (ed.) et al., Meshfree methods for partial differential equations VI. Selected papers of the sixth international workshop, Bonn, Germany, October 4–6, 2011. Berlin: Springer (ISBN 978-3-642-32978-4/hbk; 978-3-642-32979-1/ebook). Lecture Notes in Computational Science and Engineering 89, 141-154 (2013). MSC: 82D60 82-08 60J75 PDF BibTeX XML Cite \textit{K. Fackeldey} et al., Lect. Notes Comput. Sci. Eng. 89, 141--154 (2013; Zbl 1269.82072) Full Text: DOI
Tifenbach, Ryan M. On an SVD-based algorithm for identifying meta-stable states of Markov chains. (English) Zbl 1321.65056 ETNA, Electron. Trans. Numer. Anal. 38, 17-33 (2011). MSC: 65F15 15A18 15B51 60J10 60J20 PDF BibTeX XML Cite \textit{R. M. Tifenbach}, ETNA, Electron. Trans. Numer. Anal. 38, 17--33 (2011; Zbl 1321.65056) Full Text: EMIS
Friesecke, Gero; Junge, Oliver; Koltai, Péter Mean field approximation in conformation dynamics. (English) Zbl 1214.82052 Multiscale Model. Simul. 8, No. 1, 254-268 (2009). Reviewer: Farruh Mukhamedov (Kuantan) MSC: 82B44 65P99 37M25 81V45 PDF BibTeX XML Cite \textit{G. Friesecke} et al., Multiscale Model. Simul. 8, No. 1, 254--268 (2009; Zbl 1214.82052) Full Text: DOI arXiv
Fritzsche, David; Mehrmann, Volker; Szyld, Daniel B.; Virnik, Elena An SVD approach to identifying metastable states of Markov chains. (English) Zbl 1171.15008 ETNA, Electron. Trans. Numer. Anal. 29(2007-2008), 46-69 (2008). MSC: 15A18 15B51 60J10 60J20 65F15 PDF BibTeX XML Cite \textit{D. Fritzsche} et al., ETNA, Electron. Trans. Numer. Anal. 29, 46--69 (2008; Zbl 1171.15008) Full Text: EMIS EuDML
MacKay, R. S.; MacKay, D. J. C. Ergodic pumping: a mechanism to drive biomolecular conformation changes. (English) Zbl 1089.92011 Physica D 216, No. 1, 220-234 (2006). MSC: 92C40 65C20 PDF BibTeX XML Cite \textit{R. S. MacKay} and \textit{D. J. C. MacKay}, Physica D 216, No. 1, 220--234 (2006; Zbl 1089.92011) Full Text: DOI
Deuflhard, Peter; Weber, Marcus Robust Perron cluster analysis in conformation dynamics. (English) Zbl 1070.15019 Linear Algebra Appl. 398, 161-184 (2005). Reviewer: Yueh-er Kuo (Knoxville) MSC: 15B51 62H30 15A18 65F15 60J10 PDF BibTeX XML Cite \textit{P. Deuflhard} and \textit{M. Weber}, Linear Algebra Appl. 398, 161--184 (2005; Zbl 1070.15019) Full Text: DOI
Güntert, Peter; Wüthrich, Kurt Sampling of conformation space in torsion angle dynamics calculations. (English) Zbl 0981.92007 Comput. Phys. Commun. 138, No. 2, 155-169 (2001). MSC: 92C40 92-08 92C05 PDF BibTeX XML Cite \textit{P. Güntert} and \textit{K. Wüthrich}, Comput. Phys. Commun. 138, No. 2, 155--169 (2001; Zbl 0981.92007) Full Text: DOI
Schütte, Ch.; Fischer, A.; Huisinga, W.; Deuflhard, P. A direct approach to conformational dynamics based on hybrid Monte Carlo. (English) Zbl 0933.65145 J. Comput. Phys. 151, No. 1, 146-168 (1999). MSC: 65P10 65C05 37N25 37N20 37M15 PDF BibTeX XML Cite \textit{Ch. Schütte} et al., J. Comput. Phys. 151, No. 1, 146--168 (1999; Zbl 0933.65145) Full Text: DOI
Szeri, Andrew J.; Leal, L. Gary A new computational method for the solution of flow problems of microstructured fluids. I: Theory. (English) Zbl 0789.76005 J. Fluid Mech. 242, 549-576 (1992). Reviewer: H.Ramkissoon (St.Augustine) MSC: 76A05 60J65 PDF BibTeX XML Cite \textit{A. J. Szeri} and \textit{L. G. Leal}, J. Fluid Mech. 242, 549--576 (1992; Zbl 0789.76005) Full Text: DOI
Mazur, A. K.; Dorofeev, V. E.; Abagyan, R. A. Derivation and testing of explicit equations of motion for polymers described by internal coordinates. (English) Zbl 0711.92024 J. Comput. Phys. 92, No. 2, 261-272 (1991). MSC: 92E99 92F05 PDF BibTeX XML Cite \textit{A. K. Mazur} et al., J. Comput. Phys. 92, No. 2, 261--272 (1991; Zbl 0711.92024) Full Text: DOI