Åstrand, Mia; Cuellar, Julia; Hytönen, Jukka; Salminen, Tiina A. Predicting the ligand-binding properties of Borrelia burgdorferi s.s. Bmp proteins in light of the conserved features of related Borrelia proteins. (English) Zbl 1406.92166 J. Theor. Biol. 462, 97-108 (2019). MSC: 92C40 92D15 PDF BibTeX XML Cite \textit{M. Åstrand} et al., J. Theor. Biol. 462, 97--108 (2019; Zbl 1406.92166) Full Text: DOI
Rout, Subhashree; Mahapatra, Rajani Kanta In silico analysis of plasmodium falciparum CDPK5 protein through molecular modeling, docking and dynamics. (English) Zbl 1406.92209 J. Theor. Biol. 461, 254-267 (2019). MSC: 92C40 92D20 PDF BibTeX XML Cite \textit{S. Rout} and \textit{R. K. Mahapatra}, J. Theor. Biol. 461, 254--267 (2019; Zbl 1406.92209) Full Text: DOI
Alonso Rodríguez, Ana; Bertolazzi, Enrico; Ghiloni, Riccardo; Specogna, Ruben Efficient construction of 2-chains representing a basis of \(H_{2}(\overline {\Omega }, \partial {\Omega }; \mathbb {Z})\). (English) Zbl 06995447 Adv. Comput. Math. 44, No. 5, 1411-1440 (2018). Reviewer: Jason Hanson (Redmond) MSC: 65D17 68U05 52B05 55N99 65D18 55U10 PDF BibTeX XML Cite \textit{A. Alonso Rodríguez} et al., Adv. Comput. Math. 44, No. 5, 1411--1440 (2018; Zbl 06995447) Full Text: DOI
Dey, Tamal K.; Fan, Fengtao; Wang, Yusu Graph induced complex on point data. (English) Zbl 1329.62295 Comput. Geom. 48, No. 8, 575-588 (2015). MSC: 62H35 55U10 55N35 68R10 65D17 PDF BibTeX XML Cite \textit{T. K. Dey} et al., Comput. Geom. 48, No. 8, 575--588 (2015; Zbl 1329.62295) Full Text: DOI arXiv
Bazaikin, Ya. V.; Baikov, V. A.; Taimanov, I. A.; Yakovlev, A. A. Numerical analysis of topological characteristics of three-dimensional geological models of oil and gas fields. (Russian. English summary) Zbl 06687030 Mat. Model. 25, No. 10, 19-31 (2013). MSC: 76 PDF BibTeX XML Cite \textit{Ya. V. Bazaikin} et al., Mat. Model. 25, No. 10, 19--31 (2013; Zbl 06687030) Full Text: MNR MNR arXiv
Vasudevan, Ramanarayan; Ames, Aaron; Bajcsy, Ruzena Persistent homology for automatic determination of human-data based cost of bipedal walking. (English) Zbl 1270.93077 Nonlinear Anal., Hybrid Syst. 7, No. 1, 101-115 (2013). MSC: 93C85 93C30 PDF BibTeX XML Cite \textit{R. Vasudevan} et al., Nonlinear Anal., Hybrid Syst. 7, No. 1, 101--115 (2013; Zbl 1270.93077) Full Text: DOI Link
Čomić, Lidija; De Floriani, Leila; Iuricich, Federico Multi-resolution cell complexes based on homology-preserving Euler operators. (English) Zbl 1382.68255 Gonzalez-Diaz, Rocio (ed.) et al., Discrete geometry for computer imagery. 17th IAPR international conference, DGCI 2013, Seville, Spain, March 20–22, 2013. Proceedings. Berlin: Springer (ISBN 978-3-642-37066-3/pbk). Lecture Notes in Computer Science 7749, 323-334 (2013). MSC: 68U05 05E45 68U10 PDF BibTeX XML Cite \textit{L. Čomić} et al., Lect. Notes Comput. Sci. 7749, 323--334 (2013; Zbl 1382.68255) Full Text: DOI
Yanover, Chen; Fromer, Menachem Prediction of low energy protein side chain configurations using Markov random fields. (English) Zbl 1345.92110 Hamelryck, Thomas (ed.) et al., Bayesian methods in structural bioinformatics. With a foreword by Gerard Bricogne. Berlin: Springer (ISBN 978-3-642-27224-0/hbk; 978-3-642-27225-7/ebook). Statistics for Biology and Health, 255-284 (2012). MSC: 92D20 60J22 PDF BibTeX XML Cite \textit{C. Yanover} and \textit{M. Fromer}, in: Bayesian methods in structural bioinformatics. With a foreword by Gerard Bricogne. Berlin: Springer. 255--284 (2012; Zbl 1345.92110) Full Text: DOI
Cherkashin, A. K. (ed.); Istomina, E. A. (ed.) Homology and homotopy in geographic systems. (Гомология и гомотопия географических систем.) (Russian) Zbl 1263.00018 Novosibirsk: Akademicheskoe Izd. “GEO” (ISBN 978-5-9747-0171-9/hbk). 351 p. (2009). Reviewer: Alla Boikova (Penza) MSC: 00A79 00A71 86A04 PDF BibTeX XML Cite \textit{A. K. Cherkashin} (ed.) and \textit{E. A. Istomina} (ed.), Гомология и гомотопия географических систем (Russian). Novosibirsk: Akademicheskoe Izd. ``GEO'' (2009; Zbl 1263.00018)
Peltier, Samuel; Fuchs, Laurent; Lienhardt, Pascal Simploidals sets: Definitions, operations and comparison with simplicial sets. (English) Zbl 1189.05175 Discrete Appl. Math. 157, No. 3, 542-557 (2009). MSC: 05E45 52B55 55U10 68U10 PDF BibTeX XML Cite \textit{S. Peltier} et al., Discrete Appl. Math. 157, No. 3, 542--557 (2009; Zbl 1189.05175) Full Text: DOI
Gotsman, Craig; Kaligosi, Kanela; Mehlhorn, Kurt; Michail, Dimitrios; Pyrga, Evangelia Cycle bases of graphs and sampled manifolds. (English) Zbl 1171.65334 Comput. Aided Geom. Des. 24, No. 8-9, 464-480 (2007). MSC: 65D17 68U07 PDF BibTeX XML Cite \textit{C. Gotsman} et al., Comput. Aided Geom. Des. 24, No. 8--9, 464--480 (2007; Zbl 1171.65334) Full Text: DOI
Lerman, Gilad; Shakhnovich, Boris E. Defining functional distance using manifold embeddings of gene ontology annotations. (English) Zbl 1156.92323 Proc. Natl. Acad. Sci. USA 104, No. 27, 11334-11339 (2007). MSC: 92D10 92C40 PDF BibTeX XML Cite \textit{G. Lerman} and \textit{B. E. Shakhnovich}, Proc. Natl. Acad. Sci. USA 104, No. 27, 11334--11339 (2007; Zbl 1156.92323) Full Text: DOI
Zuo, Zhili; Gang, Chen; Zou, Hanjun; Mok, Puah Chum; Zhu, Weiliang; Chen, Kaixian; Jiang, Hualiang Why does \(\beta \)-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies. (English) Zbl 1122.92041 Comput. Biol. Chem. 31, No. 3, 186-195 (2007). MSC: 92C50 92C40 92C45 PDF BibTeX XML Cite \textit{Z. Zuo} et al., Comput. Biol. Chem. 31, No. 3, 186--195 (2007; Zbl 1122.92041) Full Text: DOI
Blackmore, Denis; Mileyko, Yuriy Computational differential topology. (English) Zbl 1152.57033 Appl. Gen. Topol. 8, No. 1, 35-92 (2007). Reviewer: Krzysztof Pawałowski (Poznań) MSC: 57R99 57N99 53A07 57N65 57N80 57R40 57R45 65D17 68U05 PDF BibTeX XML Cite \textit{D. Blackmore} and \textit{Y. Mileyko}, Appl. Gen. Topol. 8, No. 1, 35--92 (2007; Zbl 1152.57033) Full Text: DOI
Bagchi, Angshuman; Ghosh, Tapash Chandra Structural study of two proteins SigE and ORF1 to predict their roles in the biochemical oxidation of sulfur anions via the global sulfur oxidation operon (sox). (English) Zbl 1103.92015 Comput. Biol. Chem. 30, No. 3, 227-232 (2006). MSC: 92C40 PDF BibTeX XML Cite \textit{A. Bagchi} and \textit{T. C. Ghosh}, Comput. Biol. Chem. 30, No. 3, 227--232 (2006; Zbl 1103.92015) Full Text: DOI
Reddy, Ch. Surendhar; Vijayasarathy, K.; Srinivas, E.; Madhavi Sastry, G.; Narahari Sastry, G. Homology modeling of membrane proteins: a critical assessment. (English) Zbl 1108.92019 Comput. Biol. Chem. 30, No. 2, 120-126 (2006). MSC: 92C40 92-08 PDF BibTeX XML Cite \textit{Ch. S. Reddy} et al., Comput. Biol. Chem. 30, No. 2, 120--126 (2006; Zbl 1108.92019) Full Text: DOI
Brejová, Broňa; Brown, Daniel G.; Vinař, Tomáš Vector seeds: An extension to spaced seeds. (English) Zbl 1068.68142 J. Comput. Syst. Sci. 70, No. 3, 364-380 (2005). MSC: 68T20 92D20 PDF BibTeX XML Cite \textit{B. Brejová} et al., J. Comput. Syst. Sci. 70, No. 3, 364--380 (2005; Zbl 1068.68142) Full Text: DOI
Xiao, Jing-Fa; Li, Ze-Sheng; Sun, Miao; Zhang, Yuan; Sun, Chia-Chung Homology modeling and molecular dynamics study of GSK3/SHAGGY-like kinase. (English) Zbl 1088.92030 Comput. Biol. Chem. 28, No. 3, 179-188 (2004). MSC: 92C40 81V55 PDF BibTeX XML Cite \textit{J.-F. Xiao} et al., Comput. Biol. Chem. 28, No. 3, 179--188 (2004; Zbl 1088.92030) Full Text: DOI
Kaczynski, Tomasz; Mischaikow, Konstantin; Mrozek, Marian Computing homology. (English) Zbl 1028.55001 Homology Homotopy Appl. 5, No. 2, 233-256 (2003). Reviewer: Jonathan Hodgson (Philadelphia) MSC: 55-04 52B05 54C60 65D17 PDF BibTeX XML Cite \textit{T. Kaczynski} et al., Homology Homotopy Appl. 5, No. 2, 233--256 (2003; Zbl 1028.55001) Full Text: DOI EMIS EuDML
Olsson, Björn; Laurio, Kim; Gudjonsson, L. A hybrid method for protein sequence modeling with improved accuracy. (English) Zbl 0996.68672 Inf. Sci. 139, No. 1-2, 113-138 (2001). MSC: 68U99 68T10 92D20 PDF BibTeX XML Cite \textit{B. Olsson} et al., Inf. Sci. 139, No. 1--2, 113--138 (2001; Zbl 0996.68672) Full Text: DOI
Bruccoleri, Robert E. Energy directed conformational search of protein loops and segments. (English) Zbl 0834.92009 Pardalos, P. M. (ed.) et al., Global minimization of nonconvex energy functions: molecular conformation and protein folding. Papers selected from a DIMACS workshop held on March 20-21, 1995. Providence, RI: American Mathematical Society. DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 23, 15-28 (1996). MSC: 92C40 92C05 PDF BibTeX XML Cite \textit{R. E. Bruccoleri}, DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 23, 15--28 (1996; Zbl 0834.92009)
Delfinado, Cecil Jose A.; Edelsbrunner, Herbert An incremental algorithm for Betti numbers of simplicial complexes on the 3-sphere. (English) Zbl 0873.55007 Comput. Aided Geom. Des. 12, No. 7, 771-784 (1995). MSC: 55N99 57Q99 65D17 68Q25 05C85 PDF BibTeX XML Cite \textit{C. J. A. Delfinado} and \textit{H. Edelsbrunner}, Comput. Aided Geom. Des. 12, No. 7, 771--784 (1995; Zbl 0873.55007) Full Text: DOI
Taylor, W. The clone of a topological space. (English) Zbl 0615.54013 Research and Exposition in Mathematics, 13. Berlin: Heldermann Verlag. V, 91 p. DM 40.00 (1986). Reviewer: B.L.Madison MSC: 54C40 54C35 54C05 55Q05 54-02 55N99 17A40 17A42 16W80 PDF BibTeX XML