Bérubé, Sophie; Kobayashi, Tamaki; Wesolowski, Amy; Norris, Douglas E.; Ruczinski, Ingo; Moss, William J.; Louis, Thomas A. A Bayesian hierarchical model for signal extraction from protein microarrays. (English) Zbl 1545.62235 Stat. Med. 42, No. 9, 1445-1460 (2023). MSC: 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Wu, Joseph; Gupta, Mayetri; Hussein, Amira I.; Gerstenfeld, Louis Bayesian modeling of factorial time-course data with applications to a bone aging gene expression study. (English) Zbl 1521.62523 J. Appl. Stat. 48, No. 10, 1730-1754 (2021). MSC: 62-XX × Cite Format Result Cite Review PDF Full Text: DOI Link
Ganian, Robert; Kronegger, Martin; Pfandler, Andreas; Popa, Alexandru Parameterized complexity of asynchronous border minimization. (English) Zbl 1410.68165 Algorithmica 81, No. 1, 201-223 (2019). MSC: 68Q25 68Q17 92C40 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Srinivasan, S.; Kamakoti, V.; Bhattacharya, A. Theoretical lower bound for border length minimization problem. (English) Zbl 1377.62207 Sankhyā, Ser. B 79, No. 1, 1-20 (2017). MSC: 62P10 60C05 92C40 × Cite Format Result Cite Review PDF Full Text: DOI
Brown, D. Andrew; Datta, Gauri S.; Lazar, Nicole A. A Bayesian generalized CAR model for correlated signal detection. (English) Zbl 1372.62055 Stat. Sin. 27, No. 3, 1125-1154 (2017). MSC: 62P10 62M10 62J15 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Dasgupta, Nairanjana; Genz, Alan; Lazar, Nicole A. A look at multiplicity through misclassification. (English) Zbl 1358.62023 Sankhyā, Ser. B 78, No. 1, 96-118 (2016). MSC: 62F03 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Phipson, Belinda; Lee, Stanley; Majewski, Ian J.; Alexander, Warren S.; Smyth, Gordon K. Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression. (English) Zbl 1400.62281 Ann. Appl. Stat. 10, No. 2, 946-963 (2016). MSC: 62P10 62C12 62F35 92D20 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Elloumi, Mourad (ed.); Iliopoulos, Costas (ed.); Wang, Jason T. L. (ed.); Zomaya, Albert Y. (ed.) Pattern recognition in computational molecular biology. Techniques and approaches. (English) Zbl 1331.92006 Wiley Series on Bioinformatics: Computational Techniques and Engineering. Hoboken, NJ: John Wiley & Sons (ISBN 978-1-118-89368-5/hbk; 978-1-119-07884-5/ebook). xxviii, 624 p. (2016). MSC: 92-02 92C15 92C40 92D20 92D10 68T10 00B15 × Cite Format Result Cite Review PDF Full Text: DOI
Lee, Kyu Ha; Chakraborty, Sounak; Sun, Jianguo Survival prediction and variable selection with simultaneous shrinkage and grouping priors. (English) Zbl 07260427 Stat. Anal. Data Min. 8, No. 2, 114-127 (2015). MSC: 62-XX 68-XX × Cite Format Result Cite Review PDF Full Text: DOI
Shreif, Zeina; Striegel, Deborah A.; Periwal, Vipul The jigsaw puzzle of sequence phenotype inference: piecing together Shannon entropy, importance sampling, and empirical Bayes. (English) Zbl 1343.92322 J. Theor. Biol. 380, 399-413 (2015). MSC: 92D10 94A17 62P10 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Link
Saenko, Viacheslav; Saenko, Yury Application of the fractional-stable distributions for approximation of the gene expression profiles. (English) Zbl 1329.92090 Stat. Appl. Genet. Mol. Biol. 14, No. 3, 295-306 (2015). MSC: 92D10 60E07 62F10 62E17 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Singh, Gautam B. Fundamentals of bioinformatics and computational biology. Methods and exercises in MATLAB. (English) Zbl 1306.92001 Modeling and Optimization in Science and Technologies 6. Cham: Springer (ISBN 978-3-319-11402-6/hbk; 978-3-319-11403-3/ebook). xv, 339 p. (2015). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-01 92-08 92D10 92C40 92D20 92D15 × Cite Format Result Cite Review PDF Full Text: DOI
Ageev, V. O.; Kachanova, T. L.; Kopylev, L.; Spassova, M.; Fomin, B. F.; Fomin, O. B.; Chao, Chen W. Physics of open systems: effects of the impact of chemical stressors on differential gene expression. (English. Russian original) Zbl 1333.92040 Cybern. Syst. Anal. 50, No. 2, 218-227 (2014); translation from Kibern. Sist. Anal. No. 2, 64-74 (2014). MSC: 92D10 81S22 82B10 × Cite Format Result Cite Review PDF Full Text: DOI
McWilliams, Brian; Montana, Giovanni Subspace clustering of high-dimensional data: a predictive approach. (English) Zbl 1294.68119 Data Min. Knowl. Discov. 28, No. 3, 736-772 (2014). MSC: 68T10 62H30 68T05 92D20 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Ortega-Serrano, I.; Ruiz de Villa, M. C.; Miñarro, A. Searching for differential expression: a non-parametric approach. (English) Zbl 1453.62736 J. Stat. Comput. Simulation 83, No. 9, 1661-1670 (2013). MSC: 62P10 62G07 62C12 92C40 × Cite Format Result Cite Review PDF Full Text: DOI Link
Gaweł, Danuta; Fujarewicz, Krzysztof On the sensitivity of feature ranked lists for large-scale biological data. (English) Zbl 1268.92044 Math. Biosci. Eng. 10, No. 3, 667-690 (2013). MSC: 92C40 92D10 92-08 × Cite Format Result Cite Review PDF Full Text: DOI
Tsai, Shin-Fu; Liao, Chen-Tuo Minimum breakdown designs in blocks of size two. (English) Zbl 1251.62029 J. Stat. Plann. Inference 143, No. 1, 202-208 (2013). MSC: 62K10 62K25 62K05 × Cite Format Result Cite Review PDF Full Text: DOI
Artiemjew, Piotr Review of the extraction methods of DNA microarray features based on central decision class separation vs. rough set classifier. (English) Zbl 1360.62507 Found. Comput. Decis. Sci. 37, No. 4, 241-254 (2012). MSC: 62P10 92D20 62H30 × Cite Format Result Cite Review PDF Full Text: DOI Link
Pirim, Harun; Ekåioälu, Burak; Perkins, Andy D.; Yüceer, Çetin Clustering of high throughput gene expression data. (English) Zbl 1349.62554 Comput. Oper. Res. 39, No. 12, 3046-3061 (2012). MSC: 62P10 62H30 92D10 × Cite Format Result Cite Review PDF Full Text: DOI Link
Mallick, Bibekanand (ed.); Ghosh, Zhumur (ed.) Regulatory RNAs. Basics, methods and applications. (English) Zbl 1275.92018 Berlin: Springer (ISBN 978-3-642-22516-1/hbk; 978-3-642-22517-8/ebook). ix, 552 p. (2012). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92C40 92C50 92-08 92-06 92C42 92-02 × Cite Format Result Cite Review PDF Full Text: DOI
Qu, Long; Nettleton, Dan; Dekkers, Jack C. M. A hierarchical semiparametric model for incorporating intergene information for analysis of genomic data. (English) Zbl 1259.62101 Biometrics 68, No. 4, 1168-1177 (2012). MSC: 62P10 62G08 92C40 92D10 65C60 × Cite Format Result Cite Review PDF Full Text: DOI
Hong, Zhaoping; Lian, Heng BOPA: A Bayesian hierarchical model for outlier expression detection. (English) Zbl 1255.62065 Comput. Stat. Data Anal. 56, No. 12, 4146-4156 (2012). MSC: 62F15 62P10 92C50 × Cite Format Result Cite Review PDF Full Text: DOI Link
Kuan, Pei Fen; Chiang, Derek Y. Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation. (English) Zbl 1270.62145 Biometrics 68, No. 3, 774-783 (2012). MSC: 62P10 62J15 92C40 62G10 × Cite Format Result Cite Review PDF Full Text: DOI
Dawson, John A.; Kendziorski, Christina An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments. (English) Zbl 1251.62042 Biometrics 68, No. 2, 455-465 (2012). MSC: 62P10 62C12 92D10 92C40 92C50 × Cite Format Result Cite Review PDF Full Text: DOI Link
Natarajan, Loki; Pu, Minya; Messer, Karen Statistical tests for the intersection of independent lists of genes: sensitivity, FDR, and type I error control. (English) Zbl 1243.62135 Ann. Appl. Stat. 6, No. 2, 521-541 (2012). MSC: 62P10 92C40 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Zhou, Xi Kathy; Liu, Fei; Dannenberg, Andrew J. A Bayesian model averaging approach for observational gene expression studies. (English) Zbl 1243.62139 Ann. Appl. Stat. 6, No. 2, 497-520 (2012). MSC: 62P10 92C40 92D10 65C60 62A09 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Soneson, Charlotte; Fontes, Magnus A framework for list representation, enabling list stabilization through incorporation of gene exchangeabilities. (English) Zbl 1239.62138 Biostatistics 13, No. 1, 129-141 (2012). MSC: 62P10 92D10 92C40 60G09 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Schaalje, G. Bruce; Fields, Paul J. Open-set nearest shrunken centroid classification. (English) Zbl 1237.62083 Commun. Stat., Theory Methods 41, No. 4-6, 638-652 (2012). MSC: 62H30 62P10 65C60 × Cite Format Result Cite Review PDF Full Text: DOI
Kang, Moonsu; Lee, Jaewon Bayesian inference for the proportion of true null hypotheses using minimum Hellinger distance. (English) Zbl 1232.62048 J. Stat. Plann. Inference 142, No. 4, 820-825 (2012). MSC: 62F15 62F10 62G07 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
van Sanden, Suzy; Burzykowski, Tomasz Evaluation of Laplace distribution-based ANOVA models applied to microarray data. (English) Zbl 1511.62380 J. Appl. Stat. 38, No. 5, 937-950 (2011). MSC: 62P10 62J10 92D20 × Cite Format Result Cite Review PDF Full Text: DOI Link
Chakraborty, Sounak; Guo, Ruixin A Bayesian hybrid huberized support vector machine and its applications in high-dimensional medical data. (English) Zbl 1328.62584 Comput. Stat. Data Anal. 55, No. 3, 1342-1356 (2011). MSC: 62P10 62H30 92C50 62-07 × Cite Format Result Cite Review PDF Full Text: DOI
Wang, Xiaoming; Dinu, Irina; Liu, Wei; Yasui, Yutaka Linear combination test for hierarchical gene set analysis. (English) Zbl 1296.92077 Stat. Appl. Genet. Mol. Biol. 10, No. 1, Article No. 13, 18 p. (2011). MSC: 92B15 92D10 × Cite Format Result Cite Review PDF Full Text: DOI
Matsui, Shigeyuki; Noma, Hisashi Estimating effect sizes of differentially expressed genes for power and sample-size assessments in microarray experiments. (English) Zbl 1274.62839 Biometrics 67, No. 4, 1225-1235 (2011). MSC: 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Zhao, Yihua Posterior probability of discovery and expected rate of discovery for multiple hypothesis testing and high throughput assays. (English) Zbl 1229.62151 J. Am. Stat. Assoc. 106, No. 495, 984-996 (2011). MSC: 62P10 92C40 62J15 65C60 × Cite Format Result Cite Review PDF Full Text: DOI
Habiger, Joshua D.; Peña, Edsel A. Randomised \(P\)-values and nonparametric procedures in multiple testing. (English) Zbl 1228.62088 J. Nonparametric Stat. 23, No. 3, 583-604 (2011). MSC: 62J15 62G10 65C60 × Cite Format Result Cite Review PDF Full Text: DOI
Cao, Hongyuan; Kosorok, Michael R. Simultaneous critical values for \(t\)-tests in very high dimensions. (English) Zbl 1284.62469 Bernoulli 17, No. 1, 347-394 (2011). MSC: 62J15 60F10 62F03 62F05 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Esteban, Francisco J.; Wall, Dennis P. Using game theory to detect genes involved in autism spectrum disorder. (English) Zbl 1219.91031 Top 19, No. 1, 121-129 (2011). MSC: 91A80 92C40 91A12 × Cite Format Result Cite Review PDF Full Text: DOI
Chakraborty, Sounak Bayesian semi-supervised learning with support vector machine. (English) Zbl 1216.68214 Stat. Methodol. 8, No. 1, 68-82 (2011). MSC: 68T05 62H30 × Cite Format Result Cite Review PDF Full Text: DOI
Chun, Hyonho; Keleş, Sündüz Sparse partial least squares regression for simultaneous dimension reduction and variable selection. (English) Zbl 1411.62184 J. R. Stat. Soc., Ser. B, Stat. Methodol. 72, No. 1, 3-25 (2010). MSC: 62J05 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Burguillo, Francisco J.; Martin, Javier; Barrera, Inmaculada; Bardsley, William G. Meta-analysis of microarray data: the case of imatinib resistance in chronic myelogenous leukemia. (English) Zbl 1365.92061 Comput. Biol. Chem. 34, No. 3, 184-192 (2010). MSC: 92D10 62P10 92C40 92C50 × Cite Format Result Cite Review PDF Full Text: DOI
Jupiter, Daniel; Şahutoğlu, Jessica; Vanburen, Vincent TreeHugger: a new test for enrichment of gene ontology terms. (English) Zbl 1243.62133 INFORMS J. Comput. 22, No. 2, 210-221 (2010). MSC: 62P10 92D10 92C40 × Cite Format Result Cite Review PDF Full Text: DOI
Hu, Xiaojun; Gadbury, Gary L.; Xiang, Qinfang; Allison, David B. Illustrations on using the distribution of a \(P\)-value in high dimensional data analyses. (English) Zbl 1260.62002 Adv. Appl. Stat. Sci. 1, No. 2, 191-213 (2010). MSC: 62-07 62F03 62P10 × Cite Format Result Cite Review PDF
Tai, Yu Chuan; Kvale, Mark N.; Witte, John S. Segmentation and estimation for SNP microarrays: A Bayesian multiple change-point approach. (English) Zbl 1203.62202 Biometrics 66, No. 3, 675-683 (2010). MSC: 62P10 62F15 92C40 62N02 92C50 65C50 × Cite Format Result Cite Review PDF Full Text: DOI Link
Badaloni, Silvana; Falda, Marco Coping with uncertainty in temporal gene expressions using symbolic representations. (English) Zbl 1202.68126 Hüllermeier, Eyke (ed.) et al., Information processing and management of uncertainty in knowledge-based systems. Applications. 13th international conference, IPMU 2010, Dortmund, Germany, June 28–July 2, 2010. Proceedings. Part II. Berlin: Springer (ISBN 978-3-642-14057-0/pbk; 978-3-642-14058-7/ebook). Communications in Computer and Information Science 81, 11-20 (2010). MSC: 68P10 92D10 × Cite Format Result Cite Review PDF Full Text: DOI
Zifan, Ali; Moradi, Mohammad Hassan; Gharibzadeh, Shahriar Microarray image enhancement by denoising using decimated and undecimated multiwavelet transforms. (English) Zbl 1194.94164 Signal Image Video Process. 4, No. 2, 177-185 (2010). MSC: 94A12 94A08 42C40 × Cite Format Result Cite Review PDF Full Text: DOI
Chen, Xi; Wang, Lily; Ishwaran, Hemant An integrative pathway-based clinical-genomic model for cancer survival prediction. (English) Zbl 1198.62158 Stat. Probab. Lett. 80, No. 17-18, 1313-1319 (2010). MSC: 62P10 92C50 62H25 × Cite Format Result Cite Review PDF Full Text: DOI
Mathur, Sunil K. Statistical bioinformatics with R. (English) Zbl 1296.92003 Amsterdam: Elsevier/Academic Press (ISBN 978-0-12-375104-1/hbk; 978-0-12-810186-5/pbk; 978-0-12-375105-8/ebook). xvi, 326 p. (2010). MSC: 92-01 92-08 92B05 92B15 × Cite Format Result Cite Review PDF
Kuelbs, Jim; Vidyashankar, Anand N. Asymptotic inference for high-dimensional data. (English) Zbl 1184.62094 Ann. Stat. 38, No. 2, 836-869 (2010). MSC: 62H15 62E20 62-07 65C60 60F05 62H12 62P10 62G20 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Luo, June The discovery of mean square error consistency of a ridge estimator. (English) Zbl 1181.62107 Stat. Probab. Lett. 80, No. 5-6, 343-347 (2010). MSC: 62J07 62H12 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Song, Jongwoo; Nicolae, Dan L. A sequential clustering algorithm with applications to gene expression data. (English) Zbl 1293.62228 J. Korean Stat. Soc. 38, No. 2, 175-184 (2009). MSC: 62P10 62H30 62L12 92D10 × Cite Format Result Cite Review PDF Full Text: DOI
Marot, Guillemette; Mayer, Claus-Dieter Sequential analysis for microarray data based on sensitivity and meta-analysis. (English) Zbl 1276.62081 Stat. Appl. Genet. Mol. Biol. 8, No. 1, Article No. 3, 33 p. (2009). MSC: 62P10 62L10 × Cite Format Result Cite Review PDF Full Text: DOI
Rossell, David Gaga: a parsimonious and flexible model for differential expression analysis. (English) Zbl 1257.62111 Ann. Appl. Stat. 3, No. 3, 1035-1051 (2009). MSC: 62P10 92C40 65C60 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Han, Fang; Wu, Jingchen; Xu, Jiangfeng; Deng, Minghua Searching for differentially expressed genes by PLS-VIP method. (English) Zbl 1212.62061 Acta Sci. Nat. Univ. Pekin. 45, No. 1, 1-5 (2009). MSC: 62P10 92D10 × Cite Format Result Cite Review PDF
Baggerly, Keith A.; Coombes, Kevin R. Deriving chemosensitivity from cell lines: forensic bioinformatics and reproducible research in high-throughput biology. (English) Zbl 1185.92056 Ann. Appl. Stat. 3, No. 4, 1309-1334 (2009). MSC: 92C50 62P10 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Zhang, Aidong Protein interaction networks. Computational analysis. (English) Zbl 1320.92021 Cambridge: Cambridge University Press (ISBN 978-0-521-88895-0/hbk). xiv, 278 p. (2009). MSC: 92-02 92-08 92C40 92D20 × Cite Format Result Cite Review PDF Full Text: DOI
Choi, Dongseok; Sharma, Srilakshmi M.; Pasadhika, Sirichai; Kang, Zhixin; Harrington, Christina A.; Smith, Justine R.; Planck, Stephen R.; Rosenbaum, James T. Application of biostatistics and bioinformatics tools to identify putative transcription factor-gene regulatory network of ankylosing spondylitis and sarcoidosis. (English) Zbl 1177.62126 Commun. Stat., Theory Methods 38, No. 18, 3326-3338 (2009). MSC: 62P10 92C42 62H30 92C40 × Cite Format Result Cite Review PDF Full Text: DOI Link
Owen, Art B. Karl Pearson’s meta-analysis revisited. (English) Zbl 1191.62023 Ann. Stat. 37, No. 6B, 3867-3892 (2009). MSC: 62F03 62C15 65C60 62P10 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Farcomeni, Alessio Robust double clustering: a method based on alternating concentration steps. (English) Zbl 1276.62040 J. Classif. 26, No. 1, 77-101 (2009). MSC: 62H30 × Cite Format Result Cite Review PDF Full Text: DOI
Sarholz, Barbara; Piepho, Hans-peter Variance component estimation for mixed model analysis of cDNA microarray data. (English) Zbl 1442.62607 Biom. J. 50, No. 6, 927-939 (2008). MSC: 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Ewens, Warren J. On the use of statistics in genomics and bioinformatics. (English) Zbl 1427.62130 J. Stat. Theory Pract. 2, No. 2, 159-172 (2008). MSC: 62P10 62J15 92D20 × Cite Format Result Cite Review PDF Full Text: DOI
Rossell, David; Guerra, Rudy; Scott, Clayton Semi-parametric differential expression analysis via partial mixture estimation. (English) Zbl 1276.62089 Stat. Appl. Genet. Mol. Biol. 7, No. 1, Article No. 15, 27 p. (2008). MSC: 62P10 92C40 92D10 62A09 × Cite Format Result Cite Review PDF Full Text: DOI
Zucknick, Manuela; Richardson, Sylvia; Stronach, Euan A. Comparing the characteristics of gene expression profiles derived by univariate and multivariate classification methods. (English) Zbl 1276.92033 Stat. Appl. Genet. Mol. Biol. 7, No. 1, Article No. 7, 32 p. (2008). MSC: 92C40 62P10 62H30 × Cite Format Result Cite Review PDF Full Text: DOI Link
Song, Jongwoo A new dissimilarity measure in time-dependent experiments. (English) Zbl 1298.62104 J. Korean Stat. Soc. 37, No. 2, 145-153 (2008). MSC: 62H30 68T05 × Cite Format Result Cite Review PDF Full Text: DOI
Sarkar, Deepayan Extending lattice: using generics and methods to implement new visualization methods within the Trellis framework. (English) Zbl 1221.62005 Comput. Stat. 23, No. 4, 565-572 (2008). Reviewer: R. E. Maiboroda (Kyïv) MSC: 62A09 62-04 65C40 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Martínez, Octavio; Reyes-Valdés, M. Humberto Defining diversity, specialization, and gene specificity in transcriptomes through information theory. (English) Zbl 1205.94055 Proc. Natl. Acad. Sci. USA 105, No. 28, 9709-9714 (2008). MSC: 94A15 94A17 92D10 × Cite Format Result Cite Review PDF Full Text: DOI Link
Ruffino, Francesca; Muselli, Marco; Valentini, Giorgio Gene expression modeling through positive Boolean functions. (English) Zbl 1183.92037 Int. J. Approx. Reasoning 47, No. 1, 97-108 (2008). MSC: 92C40 92C42 65C20 × Cite Format Result Cite Review PDF Full Text: DOI
Peterson, Leif E.; Coleman, Matthew A. Machine learning-based receiver operating characteristic (ROC) curves for crisp and fuzzy classification of DNA microarrays in cancer research. (English) Zbl 1191.68523 Int. J. Approx. Reasoning 47, No. 1, 17-36 (2008). MSC: 68T05 92C50 × Cite Format Result Cite Review PDF Full Text: DOI Link
Goñi, Joaqín; Rodríguez-Caso, Carlos; Solé, Ricard V.; Villoslada, Pablo; Munteanu, Andreea Goals and pitfalls of gene network inference methods: a comparative study from virtual microarrays and network dynamics. (English) Zbl 1178.37124 Criado, Regino (ed.) et al., Modelling and computation on complex networks and related topics. Proceedings of the 2nd international conference (Net-Works 2008), Pamplona, Spain, June 9–11, 2008. Madrid: Universidad Rey Juan Carlos; Pamplona: Universidas de Navarra (ISBN 978-84-691-3819-9/pbk). 91-102 (2008). MSC: 37N25 62M99 90B10 90B15 × Cite Format Result Cite Review PDF
Dortet-Bernadet, Jean-Luc; Wicker, Nicolas Model-based clustering on the unit sphere with an illustration using gene expression profiles. (English) Zbl 1274.62761 Biostatistics 9, No. 1, 66-80 (2008). MSC: 62P10 62H30 92D20 × Cite Format Result Cite Review PDF Full Text: DOI
Shim, Heejung; Keles, Sündüz Integrating quantitative information from ChIP-chip experiments into motif finding. (English) Zbl 1274.62875 Biostatistics 9, No. 1, 51-65 (2008). MSC: 62P10 92D20 × Cite Format Result Cite Review PDF Full Text: DOI
Yang, Xinan; Sun, Xiao; Xie, Jianming; Lu, Zuhong Comparability of gene expression in human blood, immune and carcinoma cells. (English) Zbl 1152.92329 Appl. Math. Comput. 205, No. 1, 178-184 (2008). MSC: 92C50 92C40 × Cite Format Result Cite Review PDF Full Text: DOI
Shrestha, Nabin K. Manandhar; Ramachandran, Kandethody M. Behrens-Fisher’s distribution for selecting differentially expressed genes. (English) Zbl 1145.62091 Neural Parallel Sci. Comput. 16, No. 1, 147-164 (2008). MSC: 62P10 62F15 92C40 62F10 65C60 × Cite Format Result Cite Review PDF
Giancarlo, Raffaele; Scaturro, Davide; Utro, Filippo A tutorial on computational cluster analysis with applications to pattern discovery in microarray data. (English) Zbl 1181.68233 Math. Comput. Sci. 1, No. 4, 655-672 (2008). MSC: 68T10 68Q25 68Q05 68T05 × Cite Format Result Cite Review PDF Full Text: DOI
Cao, Yingjun; Yu, Lingchu; Tokuta, Alade; Wang, Paul P. S. pombe gene regulatory network inference using the fuzzy logic network. (English) Zbl 1136.92012 New Math. Nat. Comput. 4, No. 1, 61-76 (2008). MSC: 92C40 68Q85 68U99 68U20 92-08 92-04 × Cite Format Result Cite Review PDF Full Text: DOI
Pan, Wei; Jeong, Kyeong S.; Xie, Yang; Khodursky, Arkady A nonparametric empirical Bayes approach to joint modeling of multiple sources of genomic data. (English) Zbl 1135.62087 Stat. Sin. 18, No. 2, 709-729 (2008). MSC: 62P10 62G05 62C12 92C40 × Cite Format Result Cite Review PDF Full Text: Link
Wang, Sun-Chong; Petronis, Arturas DNA methylation microarrays. Experimental design and statistical analysis. With CD-ROM. (English) Zbl 1172.62066 Chapman & Hall/CRC Biostatistics Series 26. Boca Raton, FL: CRC Press (ISBN 978-1-4200-6727-9/hbk; 978-1-4200-6728-6/ebook). xxvi, 230 p. (2008). Reviewer: Cryssoula Ganatsiou (Larissa) MSC: 62P10 62Kxx 92C40 62-02 × Cite Format Result Cite Review PDF Full Text: DOI
Kim, Kwangsoo; Ryoo, Hong Seo A LAD-based method for selecting short oligo probes for genotyping applications. (English) Zbl 1134.92331 OR Spectrum 30, No. 2, 249-268 (2008). MSC: 92C50 62P10 92-08 × Cite Format Result Cite Review PDF Full Text: DOI Link
Matsui, Shigeyuki; Zeng, Shu; Yamanaka, Takeharu; Shaughnessy, John Sample size calculations based on ranking and selection in microarray experiments. (English) Zbl 1138.62355 Biometrics 64, No. 1, 217-226 (2008). MSC: 62P10 92C50 × Cite Format Result Cite Review PDF Full Text: DOI
Jarrett, Richard G.; Ruggiero, Katya Design and analysis of two-phase experiments for gene expression microarrays. I. (English) Zbl 1138.62352 Biometrics 64, No. 1, 208-216 (2008). MSC: 62P10 62J10 62K10 92C40 × Cite Format Result Cite Review PDF Full Text: DOI
Cooper, Stephen; Shedden, Kerby Microarrays and the relationship of mRNA variation to protein variation during the cell cycle. (English) Zbl 1453.92102 J. Theor. Biol. 249, No. 3, 574-581 (2007). MSC: 92C40 × Cite Format Result Cite Review PDF Full Text: DOI
Khondoker, Mizanur R.; Glasbey, Chris A.; Worton, Bruce J. A comparison of parametric and nonparametric methods for normalising cdna microarray data. (English) Zbl 1442.62442 Biom. J. 49, No. 6, 815-823 (2007). MSC: 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Reiner-Benaim, Anat FDR control by the BH procedure for two-sided correlated tests with implications to gene expression data analysis. (English) Zbl 1442.62583 Biom. J. 49, No. 1, 107-126 (2007). MSC: 62P10 × Cite Format Result Cite Review PDF Full Text: DOI
Chakraborty, Sounak; Mallick, Bani K.; Ghosh, Debashis; Ghosh, Malay; Dougherty, Edward Gene expression-based glioma classification using hierarchical Bayesian vector machines. (English) Zbl 1193.62187 Sankhyā 69, No. 3, 514-547 (2007). MSC: 62P10 62F15 62H30 92C50 68T05 × Cite Format Result Cite Review PDF
Sreekumar, J.; Jose, K. K. A Bayesian framework for statistical inference from gene expression data. (English) Zbl 1144.62358 Am. J. Math. Manage. Sci. 27, No. 1-2, Spec. Iss., 199-211 (2007). MSC: 62P10 62F15 92C40 92D10 × Cite Format Result Cite Review PDF Full Text: DOI
Tran, Trang; Nguyen, Cam Chi; Hoang, Ngoc Minh Management and analysis of DNA microarray data by using weighted trees. (English) Zbl 1140.92309 J. Glob. Optim. 39, No. 4, 623-645 (2007). MSC: 92C40 68R15 92-04 × Cite Format Result Cite Review PDF Full Text: DOI
Cao, Shengyu; Liu, Laifu Non-negative matrix factorization and its applications to gene expression data analysis. (Chinese. English summary) Zbl 1174.92323 J. Beijing Norm. Univ., Nat. Sci. 43, No. 1, 30-33 (2007). MSC: 92C40 15A23 92-08 × Cite Format Result Cite Review PDF
Wang, Sijian; Zhu, Ji Variable selection for model-based high-dimensional clustering. (English) Zbl 1134.62042 Verducci, Joseph Stephen (ed.) et al., Prediction and discovery. AMS-IMS-SIAM joint summer research conference on machine and statistical learning: prediction and discovery, Snowbird, UT, USA, June 25–29, 2006. Contemporary Mathematics 443 (ISBN 978-0-8218-4195-2/pbk). 177-192 (2007). MSC: 62H30 65C60 62P10 × Cite Format Result Cite Review PDF
Bianchi, Daniela; Calogero, Raffaele; Tirozzi, Brunello Kohonen neural networks and genetic classification. (English) Zbl 1131.68078 Math. Comput. Modelling 45, No. 1-2, 34-60 (2007). MSC: 68T05 62H30 82C32 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Jhun, Myoungshic; Jeong, Hyeong Chul; Koo, Ja-Yong On the use of adaptive nearest neighbors for missing value imputation. (English) Zbl 1126.62043 Commun. Stat., Simulation Comput. 36, No. 6, 1275-1286 (2007). MSC: 62H12 62P10 62G05 65C60 65C05 × Cite Format Result Cite Review PDF Full Text: DOI
Polanski, Andrzej; Polanska, Joanna; Jarzab, Michal; Wiench, Malgorzata; Jarzab, Barbara Application of Bayesian networks for inferring cause-effect relations from gene expression profiles of cancer versus normal cells. (English) Zbl 1126.92027 Math. Biosci. 209, No. 2, 528-546 (2007). MSC: 92C50 62P10 92C40 62F15 × Cite Format Result Cite Review PDF Full Text: DOI
Klebanov, Lev; Yakovlev, Andrei Diverse correlation structures in gene expression data and their utility in improving statistical inference. (English) Zbl 1126.62105 Ann. Appl. Stat. 1, No. 2, 538-559 (2007). MSC: 62P10 92C40 62H20 62N03 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Wu, Haiyan; Yuan, Ming; Kaech, Susan M.; Halloran, M. Elizabeth A statistical analysis of memory CD8 T cell differentiation: An application of a hierarchical state space model to a short time course microarray experiment. (English) Zbl 1126.62110 Ann. Appl. Stat. 1, No. 2, 442-458 (2007). MSC: 62P10 92C50 62C12 × Cite Format Result Cite Review PDF Full Text: DOI arXiv Euclid
Feres de Souza, Bruno; Carvalho, André C. P. L. F.; Cancino Ticona, Waldo Applying genetic algorithms and support vector machines to the gene selection problem. (English) Zbl 1143.68534 J. Intell. Fuzzy Syst. 18, No. 5, 435-444 (2007). MSC: 68T05 × Cite Format Result Cite Review PDF
Sánchez, Alex; Salicrú, Miquel; Ocaña, Jordi Statistical methods for the analysis of high-throughput data based on functional profiles derived from the Gene Ontology. (English) Zbl 1122.62093 J. Stat. Plann. Inference 137, No. 12, 3975-3989 (2007). MSC: 62P10 92D10 92C40 92D20 × Cite Format Result Cite Review PDF Full Text: DOI
Kosorok, Michael R.; Ma, Shuangge Marginal asymptotics for the “large \(p\), small \(n\)” paradigm: with applications to microarray data. (English) Zbl 1123.62005 Ann. Stat. 35, No. 4, 1456-1486 (2007). MSC: 62A01 62P10 62H99 62G20 92C40 × Cite Format Result Cite Review PDF Full Text: DOI arXiv
Carvalho, Benilton; Bengtsson, Henrik; Speed, Terence P.; Irizarry, Rafael A. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. (English) Zbl 1144.62088 Biostatistics 8, No. 2, 485-499 (2007). MSC: 62P10 92C40 × Cite Format Result Cite Review PDF Full Text: DOI Link
Mumey, Brendan; Showe, Louise; Showe, Michael Discovering classes in microarray data using island counts. (English) Zbl 1114.92029 J. Comb. Optim. 13, No. 3, 207-216 (2007). MSC: 92C40 90C27 65Y20 90C90 × Cite Format Result Cite Review PDF Full Text: DOI
Nott, David J.; Yu, Zeming; Chan, Eva; Cotsapas, Chris; Cowley, Mark J.; Pulvers, Jeremy; Williams, Rohan; Little, Peter Hierarchical Bayes variable selection and microarray experiments. (English) Zbl 1118.62035 J. Multivariate Anal. 98, No. 4, 852-872 (2007). MSC: 62F15 62P10 62C12 62F07 65C40 92C40 × Cite Format Result Cite Review PDF Full Text: DOI
Johnson, E. Ewan; Li, Cheng; Rabinovic, Ariel Adjusting batch effects in microarray expression data using empirical Bayes methods. (English) Zbl 1170.62389 Biostatistics 8, No. 1, 118-127 (2007). MSC: 62P10 62C12 × Cite Format Result Cite Review PDF Full Text: DOI
Dobbin, Kevin K.; Simon, Richard M. Sample size planning for developing classifiers using high-dimensional DNA microarray data. (English) Zbl 1170.62374 Biostatistics 8, No. 1, 101-117 (2007). MSC: 62P10 92D10 62H30 × Cite Format Result Cite Review PDF Full Text: DOI