Karasözen, Bülent; Mülayim, Gülden; Uzunca, Murat Nonintrusive model order reduction for cross-diffusion systems. (English) Zbl 1501.65089 Commun. Nonlinear Sci. Numer. Simul. 115, Article ID 106734, 17 p. (2022). Reviewer: Zhen Chao (Milwaukee) MSC: 65N06 65D12 65F20 15A69 35A01 35K51 35K58 65L10 65L12 65L20 65L70 92D25 92C40 35Q92 PDFBibTeX XMLCite \textit{B. Karasözen} et al., Commun. Nonlinear Sci. Numer. Simul. 115, Article ID 106734, 17 p. (2022; Zbl 1501.65089) Full Text: DOI arXiv
Wentz, Jacqueline; Cameron, Jeffrey C.; Bortz, David M. Analytical singular value decomposition for a class of stoichiometry matrices. (English) Zbl 1494.15010 SIAM J. Matrix Anal. Appl. 43, No. 3, 1109-1147 (2022). MSC: 15A18 47A80 35Q92 92C40 92E20 80A30 80A32 PDFBibTeX XMLCite \textit{J. Wentz} et al., SIAM J. Matrix Anal. Appl. 43, No. 3, 1109--1147 (2022; Zbl 1494.15010) Full Text: DOI arXiv
Esposito, Flavia; Gillis, Nicolas; Del Buono, Nicoletta Orthogonal joint sparse NMF for microarray data analysis. (English) Zbl 1418.92039 J. Math. Biol. 79, No. 1, 223-247 (2019). MSC: 92C40 15A23 PDFBibTeX XMLCite \textit{F. Esposito} et al., J. Math. Biol. 79, No. 1, 223--247 (2019; Zbl 1418.92039) Full Text: DOI Link
Menini, Laura; Possieri, Corrado; Tornambè, Antonio Boolean network analysis through the joint use of linear algebra and algebraic geometry. (English) Zbl 1412.92096 J. Theor. Biol. 472, 46-53 (2019). MSC: 92C40 92C42 14A99 15A99 PDFBibTeX XMLCite \textit{L. Menini} et al., J. Theor. Biol. 472, 46--53 (2019; Zbl 1412.92096) Full Text: DOI
Giordano, Giulia; Cuba Samaniego, Christian; Franco, Elisa; Blanchini, Franco Computing the structural influence matrix for biological systems. (English) Zbl 1359.92040 J. Math. Biol. 72, No. 7, 1927-1958 (2016). MSC: 92C42 15B35 34A34 92C40 92E20 PDFBibTeX XMLCite \textit{G. Giordano} et al., J. Math. Biol. 72, No. 7, 1927--1958 (2016; Zbl 1359.92040) Full Text: DOI
Stcherbic, Valery V.; Buchatsky, Leonid P. Living matter: algebra of molecules. (English) Zbl 1333.92007 Boca Raton, FL: CRC Press (ISBN 978-1-4987-4137-8/hbk; 978-1-4987-4138-5/ebook). ix, 150 p. (2016). Reviewer: Irina Ioana Mohorianu (Norwich) MSC: 92-02 92C40 15A66 92D20 PDFBibTeX XMLCite \textit{V. V. Stcherbic} and \textit{L. P. Buchatsky}, Living matter: algebra of molecules. Boca Raton, FL: CRC Press (2016; Zbl 1333.92007) Full Text: DOI
Gleich, David F. PageRank beyond the web. (English) Zbl 1336.05122 SIAM Rev. 57, No. 3, 321-363 (2015). MSC: 05C82 91D30 92C42 90B10 90C35 92E10 94C15 15A16 15A09 65F60 65F10 60J10 68R10 PDFBibTeX XMLCite \textit{D. F. Gleich}, SIAM Rev. 57, No. 3, 321--363 (2015; Zbl 1336.05122) Full Text: DOI arXiv
Bratus, Alexander S.; Novozhilov, Artem S.; Semenov, Yuri S. Linear algebra of the permutation invariant Crow-Kimura model of prebiotic evolution. (English) Zbl 1330.92084 Math. Biosci. 256, 42-57 (2014). MSC: 92D15 92C40 15B99 PDFBibTeX XMLCite \textit{A. S. Bratus} et al., Math. Biosci. 256, 42--57 (2014; Zbl 1330.92084) Full Text: DOI arXiv
Vembarasan, V.; Nagamani, G.; Balasubramaniam, P.; Park, Ju H. State estimation for delayed genetic regulatory networks based on passivity theory. (English) Zbl 1280.92018 Math. Biosci. 244, No. 2, 165-175 (2013). MSC: 92C42 92D10 92C40 62P10 15A45 92-08 PDFBibTeX XMLCite \textit{V. Vembarasan} et al., Math. Biosci. 244, No. 2, 165--175 (2013; Zbl 1280.92018) Full Text: DOI
Langemann, Dirk; Richter, Otto; Vollrath, Antje Multi-gene-loci inheritance in resistance modeling. (English) Zbl 1257.92028 Math. Biosci. 242, No. 1, 17-24 (2013). MSC: 92C50 92C40 15A69 92-08 PDFBibTeX XMLCite \textit{D. Langemann} et al., Math. Biosci. 242, No. 1, 17--24 (2013; Zbl 1257.92028) Full Text: DOI
Brackley, Chris A.; Broomhead, David S.; Romano, M. Carmen; Thiel, Marco A MAX-plus model of ribosome dynamics during mRNA translation. (English) Zbl 1337.92053 J. Theor. Biol. 303, 128-140 (2012). MSC: 92C40 15A80 PDFBibTeX XMLCite \textit{C. A. Brackley} et al., J. Theor. Biol. 303, 128--140 (2012; Zbl 1337.92053) Full Text: DOI arXiv
Jiang, Xingpeng; Weitz, Joshua S.; Dushoff, Jonathan A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data. (English) Zbl 1252.92023 J. Math. Biol. 64, No. 4, 697-711 (2012). MSC: 92C40 15A23 92D40 65C20 PDFBibTeX XMLCite \textit{X. Jiang} et al., J. Math. Biol. 64, No. 4, 697--711 (2012; Zbl 1252.92023) Full Text: DOI
Chen, Po-Wei; Chen, Bor-Sen Robust synchronization analysis in nonlinear stochastic cellular networks with time-varying delays, intracellular perturbations and intercellular noise. (English) Zbl 1218.92033 Math. Biosci. 232, No. 2, 116-134 (2011). MSC: 92C40 92C42 37N25 15A39 65C20 PDFBibTeX XMLCite \textit{P.-W. Chen} and \textit{B.-S. Chen}, Math. Biosci. 232, No. 2, 116--134 (2011; Zbl 1218.92033) Full Text: DOI
Lee, Yun; Chen, Po-Wei; Voit, Eberhard O. Analysis of operating principles with S-system models. (English) Zbl 1214.92021 Math. Biosci. 231, No. 1, 49-60 (2011). MSC: 92C40 92C42 15A09 90C05 92B05 PDFBibTeX XMLCite \textit{Y. Lee} et al., Math. Biosci. 231, No. 1, 49--60 (2011; Zbl 1214.92021) Full Text: DOI Link
Crowder, Tanner; Li, Chi-Kwong Studying genetic code by a matrix approach. (English) Zbl 1193.92037 Bull. Math. Biol. 72, No. 4, 953-972 (2010). MSC: 92C40 15B99 92D10 PDFBibTeX XMLCite \textit{T. Crowder} and \textit{C.-K. Li}, Bull. Math. Biol. 72, No. 4, 953--972 (2010; Zbl 1193.92037) Full Text: DOI
Jeganathan, L.; Rama, R. Matrix splicing system. (English) Zbl 1181.92019 Int. J. Comput. Math. 87, No. 2, 278-309 (2010). MSC: 92C40 15A15 68Q05 15A99 PDFBibTeX XMLCite \textit{L. Jeganathan} and \textit{R. Rama}, Int. J. Comput. Math. 87, No. 2, 278--309 (2010; Zbl 1181.92019) Full Text: DOI
Chen, Bor-Sen; Chen, Po-Wei On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances. (English) Zbl 1178.92023 Math. Biosci. 222, No. 2, 92-108 (2009). MSC: 92C42 92C40 34K20 34K60 15A39 PDFBibTeX XMLCite \textit{B.-S. Chen} and \textit{P.-W. Chen}, Math. Biosci. 222, No. 2, 92--108 (2009; Zbl 1178.92023) Full Text: DOI
Sit, Atilla; Wu, Zhijun; Yuan, Yaxiang A geometric buildup algorithm for the solution of the distance geometry problem using least-squares approximation. (English) Zbl 1180.92029 Bull. Math. Biol. 71, No. 8, 1914-1933 (2009). MSC: 92C40 92-08 92C05 65C20 90C90 15A18 PDFBibTeX XMLCite \textit{A. Sit} et al., Bull. Math. Biol. 71, No. 8, 1914--1933 (2009; Zbl 1180.92029) Full Text: DOI
Wang, Zhengxia; Liao, Xiaofeng; Mao, Jiali; Liu, Guodong Robust stability of stochastic genetic regulatory networks with discrete and distributed delays. (English) Zbl 1176.92021 Soft Comput. 13, No. 12, 1199-1208 (2009). MSC: 92C42 92C40 34K20 92D10 93D09 15A39 PDFBibTeX XMLCite \textit{Z. Wang} et al., Soft Comput. 13, No. 12, 1199--1208 (2009; Zbl 1176.92021) Full Text: DOI
Hitzer, Eckhard; Tachibana, Kanta; Buchholz, Sven; Yu, Isseki Carrier method for the general evaluation and control of pose, molecular conformation, tracking, and the like. (English) Zbl 1187.15026 Adv. Appl. Clifford Algebr. 19, No. 2, 339-364 (2009). Reviewer: Jayme Vaz (Campinas) MSC: 15A66 68T40 68T45 68U05 92C40 PDFBibTeX XMLCite \textit{E. Hitzer} et al., Adv. Appl. Clifford Algebr. 19, No. 2, 339--364 (2009; Zbl 1187.15026) Full Text: DOI
Marin-Sanguino, Alberto; Torres, Nestor V.; Mendoza, Eduardo R.; Oesterhelt, Dieter Metabolic engineering with power-law and linear-logarithmic systems. (English) Zbl 1157.92018 Math. Biosci. 218, No. 1, 50-58 (2009). MSC: 92C40 93A30 15A99 PDFBibTeX XMLCite \textit{A. Marin-Sanguino} et al., Math. Biosci. 218, No. 1, 50--58 (2009; Zbl 1157.92018) Full Text: DOI
Devarajan, Karthik; Ebrahimi, Nader Class discovery via nonnegative matrix factorization. (English) Zbl 1175.62115 Am. J. Math. Manage. Sci. 28, No. 3-4, Spec. Iss., 457-467 (2008). MSC: 62P10 92C40 15A23 65C60 92D10 PDFBibTeX XMLCite \textit{K. Devarajan} and \textit{N. Ebrahimi}, Am. J. Math. Manage. Sci. 28, No. 3--4, 457--467 (2008; Zbl 1175.62115) Full Text: DOI
Randić, Milan; Zupan, Jure; Pisanski, Tomaž On representation of DNA by line distance matrix. (English) Zbl 1195.92025 J. Math. Chem. 43, No. 2, 674-692 (2008). MSC: 92C40 15B99 PDFBibTeX XMLCite \textit{M. Randić} et al., J. Math. Chem. 43, No. 2, 674--692 (2008; Zbl 1195.92025) Full Text: DOI
Stolte, T.; Rentrop, P. A singular value based probability algorithm for protein cleavage. (English) Zbl 1143.92014 Breitner, Michael H. (ed.) et al., From nano to space. Applied mathematics inspired by Roland Bulirsch. Berlin: Springer (ISBN 978-3-540-74237-1/hbk). 99-110 (2008). MSC: 92C40 15A18 PDFBibTeX XMLCite \textit{T. Stolte} and \textit{P. Rentrop}, in: From nano to space. Applied mathematics inspired by Roland Bulirsch. Berlin: Springer. 99--110 (2008; Zbl 1143.92014) Full Text: DOI
Deng, Ping; Hwang, F. K.; Wu, Weili; MacCallum, David; Wang, Feng; Znati, Taieb Improved construction for pooling design. (English) Zbl 1134.92324 J. Comb. Optim. 15, No. 1, 123-126 (2008). MSC: 92C40 15A99 PDFBibTeX XMLCite \textit{P. Deng} et al., J. Comb. Optim. 15, No. 1, 123--126 (2008; Zbl 1134.92324) Full Text: DOI
Jaklič, Gašper; Pisanski, Tomaž; Randić, Milan On description of biological sequences by spectral properties of line distance matrices. (English) Zbl 1270.92014 MATCH Commun. Math. Comput. Chem. 58, No. 2, 301-307 (2007). MSC: 92C40 15B99 PDFBibTeX XMLCite \textit{G. Jaklič} et al., MATCH Commun. Math. Comput. Chem. 58, No. 2, 301--307 (2007; Zbl 1270.92014)
Michel, Christian J. An analytical model of gene evolution with 9 mutation parameters: An application to the amino acids coded by the common circular code. (English) Zbl 1139.92312 Bull. Math. Biol. 69, No. 2, 677-698 (2007). MSC: 92D15 92C40 15A99 60C05 PDFBibTeX XMLCite \textit{C. J. Michel}, Bull. Math. Biol. 69, No. 2, 677--698 (2007; Zbl 1139.92312) Full Text: DOI
Cao, Shengyu; Liu, Laifu Non-negative matrix factorization and its applications to gene expression data analysis. (Chinese. English summary) Zbl 1174.92323 J. Beijing Norm. Univ., Nat. Sci. 43, No. 1, 30-33 (2007). MSC: 92C40 15A23 92-08 PDFBibTeX XMLCite \textit{S. Cao} and \textit{L. Liu}, J. Beijing Norm. Univ., Nat. Sci. 43, No. 1, 30--33 (2007; Zbl 1174.92323)
Michel, Christian J. Codon phylogenetic distance. (English) Zbl 1124.92035 Comput. Biol. Chem. 31, No. 1, 36-43 (2007). MSC: 92D15 92C40 15B51 PDFBibTeX XMLCite \textit{C. J. Michel}, Comput. Biol. Chem. 31, No. 1, 36--43 (2007; Zbl 1124.92035) Full Text: DOI
Longinetti, Marco; Luchinat, Claudio; Parigi, Giacomo; Sgheri, Luca Efficient determination of the most favoured orientations of protein domains from paramagnetic NMR data. (English) Zbl 1095.92033 Inverse Probl. 22, No. 4, 1485-1502 (2006). MSC: 92C40 92C05 15A99 PDFBibTeX XMLCite \textit{M. Longinetti} et al., Inverse Probl. 22, No. 4, 1485--1502 (2006; Zbl 1095.92033) Full Text: DOI
Manca, Vincenzo On the logic and geometry of bilinear forms. (English) Zbl 1100.92019 Fundam. Inform. 64, No. 1-4, 261-273 (2005). MSC: 92C40 15A99 PDFBibTeX XMLCite \textit{V. Manca}, Fundam. Inform. 64, No. 1--4, 261--273 (2005; Zbl 1100.92019) Full Text: Link
Satnoianu, R. A.; van den Driessche, P. Some remarks on matrix stability with application to Turing instability. (English) Zbl 1069.15018 Linear Algebra Appl. 398, 69-74 (2005). Reviewer: C.M. da Fonseca (Coimbra) MSC: 15A42 92C40 PDFBibTeX XMLCite \textit{R. A. Satnoianu} and \textit{P. van den Driessche}, Linear Algebra Appl. 398, 69--74 (2005; Zbl 1069.15018) Full Text: DOI
Huang, Hua-Min; Hwang, Frank K.; Ma, Jian-Feng Using transforming matrices to generate DNA clone grids. (English) Zbl 1021.92009 Discrete Appl. Math. 129, No. 2-3, 421-431 (2003). MSC: 92C40 15A99 92D20 PDFBibTeX XMLCite \textit{H.-M. Huang} et al., Discrete Appl. Math. 129, No. 2--3, 421--431 (2003; Zbl 1021.92009) Full Text: DOI
Orland, Henri; Zee, A. RNA folding and large \(N\) matrix theory. (English) Zbl 0991.92011 Nucl. Phys., B 620, No. 3, 456-476 (2002). MSC: 92C40 15A99 PDFBibTeX XMLCite \textit{H. Orland} and \textit{A. Zee}, Nucl. Phys., B 620, No. 3, 456--476 (2002; Zbl 0991.92011) Full Text: DOI arXiv
Matthew, He Double helical sequences and doubly stochastic matrices. (English) Zbl 1089.92012 Symmetry Cult. Sci. 12, No. 3-4, 307-330 (2001). MSC: 92C40 15B51 92D10 PDFBibTeX XMLCite \textit{H. Matthew}, Symmetry Cult. Sci. 12, No. 3--4, 307--330 (2001; Zbl 1089.92012)
Harrison, Paul Computational methods in physics, chemistry and biology. An introduction. (English) Zbl 0987.65001 Chichester: Wiley. xx, 201 p. (2001). Reviewer: Miloslav Znojil (Řež) MSC: 65-01 81-04 82-08 15-04 34-04 65C05 65Z05 92D25 81Q05 82C43 82C22 PDFBibTeX XMLCite \textit{P. Harrison}, Computational methods in physics, chemistry and biology. An introduction. Chichester: Wiley (2001; Zbl 0987.65001)
Bogatyrev, Andrei B. On relative position of two biopolymer molecules minimizing the weighted sum of interatomic distances squared. (English) Zbl 0980.92009 Floudas, C. A. (ed.) et al., Optimization in computational chemistry and molecular biology. Local and global approaches. Conference, Princeton Univ., Princeton, NJ, USA, May 7-9, 1999. Boston: Kluwer Academic Publishers. Nonconvex Optim. Appl. 40, 263-266 (2000). MSC: 92C40 15A90 15A23 15A18 PDFBibTeX XMLCite \textit{A. B. Bogatyrev}, Nonconvex Optim. Appl. 40, 263--266 (2000; Zbl 0980.92009)
Meidanis, João; Porto, Oscar; Telles, Guilherme P. On the consecutive ones property. (English) Zbl 0918.05045 Discrete Appl. Math. 88, No. 1-3, 325-354 (1998). MSC: 05C05 15B33 92C40 PDFBibTeX XMLCite \textit{J. Meidanis} et al., Discrete Appl. Math. 88, No. 1--3, 325--354 (1998; Zbl 0918.05045) Full Text: DOI
Lundy, Thomas; Sen, Asok K. Sign pattern analysis of control coefficients of metabolic pathways. (English) Zbl 0829.15001 SIAM J. Matrix Anal. Appl. 16, No. 3, 828-842 (1995). Reviewer: G.Bonanno (Davis) MSC: 15A09 92C40 93D15 PDFBibTeX XMLCite \textit{T. Lundy} and \textit{A. K. Sen}, SIAM J. Matrix Anal. Appl. 16, No. 3, 828--842 (1995; Zbl 0829.15001) Full Text: DOI
Küppers, Bernd Some remarks on the dynamics of molecular self-organization. (English) Zbl 0415.92001 Bull. Math. Biol. 41, 803-812 (1979). MSC: 92B05 15A18 PDFBibTeX XMLCite \textit{B. Küppers}, Bull. Math. Biol. 41, 803--812 (1979; Zbl 0415.92001) Full Text: DOI