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Found 216 Documents (Results 1–100)

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A fast counting method for 6-motifs with low connectivity. (English) Zbl 07441079

Slamanig, Daniel (ed.) et al., Mathematical aspects of computer and information sciences. 8th international conference, MACIS 2019, Gebze, Turkey, November 13–15, 2019. Revised selected papers. Cham: Springer. Lect. Notes Comput. Sci. 11989, 324-332 (2020).
MSC:  68-XX 65-XX
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Distributed vector representations of folksong motifs. (English) Zbl 1456.00057

Montiel, Mariana (ed.) et al., Mathematics and computation in music. 7th international conference, MCM 2019, Madrid, Spain, June 18–21, 2019, Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11502, 325-332 (2019).
MSC:  00A65 92B20
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Efficient algorithms for finding edit-distance based motifs. (English) Zbl 1446.92221

Holmes, Ian (ed.) et al., Algorithms for computational biology. 6th international conference, AlCoB 2019, Berkeley, CA, USA, May 28–30, 2019. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11488, 212-223 (2019).
MSC:  92D20 68W99
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Engineering motif search for large motifs. (English) Zbl 07286701

D’Angelo, Gianlorenzo (ed.), 17th symposium on experimental algorithms, SEA 2018, June 27–29, 2018, L’Aquila, Italy. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 103, Article 28, 19 p. (2018).
MSC:  68Wxx
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Unravelling the sensitivity of two motif structures under random perturbation. (English) Zbl 1401.92065

Mondaini, Rubem P. (ed.), Trends in biomathematics: modeling, optimization and computational problems. Selected works from the 17th BIOMAT consortium lectures, Moscow, Russia, October 30 – November 3, 2017. Cham: Springer; Rio de Janeiro: BIOMAT Consortium, International Institute for Interdisciplinary Sciences (ISBN 978-3-319-91091-8/hbk; 978-3-319-91092-5/ebook). 245-263 (2018).
MSC:  92C37 92C40 60H10
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On multiple longest common subsequence and common motifs with gaps (extended abstract). (English) Zbl 06889931

Rahman, M. Sohel (ed.) et al., WALCOM: algorithms and computation. 12th international conference, WALCOM 2018, Dhaka, Bangladesh, March 3–5, 2018. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 10755, 207-215 (2018).
MSC:  68Wxx
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Seed-driven learning of position probability matrices from large sequence sets. (English) Zbl 1443.92147

Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 25, 13 p. (2017).
MSC:  92D20 92-04
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Solution to motif finding problem in membranes. (English) Zbl 1483.68116

Leporati, Alberto (ed.) et al., Membrane computing. 17th international conference, CMC 2016, Milan, Italy, July 25–29, 2016. Revised selected papers. Cham: Springer. Lect. Notes Comput. Sci. 10105, 190-208 (2017).
MSC:  68Q07 68Q25 92D20
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Enumerating minimal tropical connected sets. (English) Zbl 1450.05041

Steffen, Bernhard (ed.) et al., SOFSEM 2017: theory and practice of computer science. 43rd international conference on current trends in theory and practice of computer science, Limerick, Ireland, January 16–20, 2017, Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 10139, 217-228 (2017).
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Parallel identifying \((l,d)\)-motifs in biosequences using CPU and GPU computing. (English) Zbl 1475.68471

Zhu, Daming (ed.) et al., Frontiers in algorithmics. 10th international workshop, FAW 2016, Qingdao, China, June 30 – July 2, 2016. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 9711, 257-268 (2016).
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The graph motif problem parameterized by the structure of the input graph. (English) Zbl 1378.68064

Husfeldt, Thore (ed.) et al., 10th international symposium on parameterized and exact computation, IPEC 2015, Patras, Greece, September 16–18, 2015. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-92-7). LIPIcs – Leibniz International Proceedings in Informatics 43, 319-330 (2015).
MSC:  68Q25 68Q17 68R10
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Output-sensitive pattern extraction in sequences. (English) Zbl 1360.68964

Raman, Venkatesh (ed.) et al., 34th international conference on foundation of software technology and theoretical computer science, FSTTCS 2014, New Delhi, India, December 15–17, 2014. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-77-4). LIPIcs – Leibniz International Proceedings in Informatics 29, 303-314 (2014).
MSC:  68W32
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RNA sequence, structure, and function: computational and bioinformatic methods. (English) Zbl 1307.92008

Methods in Molecular Biology 1097. New York, NY: Humana Press/Springer (ISBN 978-1-62703-708-2/hbk; 978-1-62703-709-9/ebook). xi, 533 p. (2014).
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Probably optimal graph motifs. (English) Zbl 1354.68108

Portier, Natacha (ed.) et al., 30th international symposium on theoretical aspects of computer science, STACS’ 13, Kiel, Germany, February 27 – March 2, 2013. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-50-7). LIPIcs – Leibniz International Proceedings in Informatics 20, 20-31 (2013).
MSC:  68Q25 05C35 05C85
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Extended sunflower hidden Markov models for the recognition of homotypic cis-regulatory modules. (English) Zbl 1281.92048

Beißbarth, Tim (ed.) et al., German conference on bioinformatics 2013, GCB’13, Göttingen, Germany, September 10–13, 2013. Selected papers based on the presentations at the conference. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-59-0). OASIcs – OpenAccess Series in Informatics 34, 101-109, electronic only (2013).
MSC:  92D10 62P10
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Parameterized algorithms for module motif. (English) Zbl 1353.68140

Chatterjee, Krishnendu (ed.) et al., Mathematical foundations of computer science 2013. 38th international symposium, MFCS 2013, Klosterneuburg, Austria, August 26–30, 2013. Proceedings. Berlin: Springer (ISBN 978-3-642-40312-5/pbk). Lecture Notes in Computer Science 8087, 825-836 (2013).
MSC:  68Q25 68R10 92C42
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Bouma2 – a high-performance input-aware multiple string-match algorithm. (English) Zbl 1297.68276

Bouchou-Markhoff, Béatrice (ed.) et al., Implementation and application of automata. 16th international conference, CIAA 2011, Blois, France, July 13–16, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-22255-9/pbk). Lecture Notes in Computer Science 6807, 53-64 (2011).
MSC:  68W32 68Q45
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