Pisinger, David; Sørensen, Siv Topology reconstruction using time series data in telecommunication networks. (English) Zbl 07819290 Networks 83, No. 2, 408-427 (2024). MSC: 90B18 90C35 90C59 PDFBibTeX XMLCite \textit{D. Pisinger} and \textit{S. Sørensen}, Networks 83, No. 2, 408--427 (2024; Zbl 07819290) Full Text: DOI OA License
Ardévol Martínez, Virginia; Rizzi, Romeo; Sikora, Florian Hardness of Balanced Mobiles. (English) Zbl 07781722 Hsieh, Sun-Yuan (ed.) et al., Combinatorial algorithms. 34th international workshop, IWOCA 2023, Tainan, Taiwan, June 7–10, 2023. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13889, 25-35 (2023). MSC: 68Rxx 68Wxx PDFBibTeX XMLCite \textit{V. Ardévol Martínez} et al., Lect. Notes Comput. Sci. 13889, 25--35 (2023; Zbl 07781722) Full Text: DOI
Brandenburg, Marie-Charlotte; Loho, Georg; Sinn, Rainer Tropical positivity and determinantal varieties. (English) Zbl 07777638 Algebr. Comb. 6, No. 4, 999-1040 (2023). MSC: 14T15 14P05 14M12 05E14 52B40 PDFBibTeX XMLCite \textit{M.-C. Brandenburg} et al., Algebr. Comb. 6, No. 4, 999--1040 (2023; Zbl 07777638) Full Text: DOI arXiv
Landry, Kaari; Tremblay-Savard, Olivier; Lafond, Manuel Finding agreement cherry-reduced subnetworks in level-1 networks. (English) Zbl 07777122 Jahn, Katharina (ed.) et al., Comparative genomics. 20th international conference, RECOMB-CG 2023, Istanbul, Turkey, April 14–15, 2023. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13883, 179-195 (2023). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{K. Landry} et al., Lect. Notes Comput. Sci. 13883, 179--195 (2023; Zbl 07777122) Full Text: DOI arXiv
Khayatian, Elahe; Valiente, Gabriel; Zhang, Louxin The \(K\)-Robinson Foulds measures for labeled trees. (English) Zbl 07777120 Jahn, Katharina (ed.) et al., Comparative genomics. 20th international conference, RECOMB-CG 2023, Istanbul, Turkey, April 14–15, 2023. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13883, 146-161 (2023). MSC: 92D15 92C32 PDFBibTeX XMLCite \textit{E. Khayatian} et al., Lect. Notes Comput. Sci. 13883, 146--161 (2023; Zbl 07777120) Full Text: DOI
Cholaquidis, Alejandro; Fraiman, Ricardo; Gamboa, Fabrice; Moreno, Leonardo Weighted lens depth: some applications to supervised classification. (English. French summary) Zbl 07759548 Can. J. Stat. 51, No. 2, 652-673 (2023). MSC: 62-XX PDFBibTeX XMLCite \textit{A. Cholaquidis} et al., Can. J. Stat. 51, No. 2, 652--673 (2023; Zbl 07759548) Full Text: DOI arXiv
Dinneen, Michael J.; Ghodla, Pankaj S.; Linz, Simone A QUBO formulation for the tree containment problem. (English) Zbl 07676465 Theor. Comput. Sci. 940, 60-79 (2023). MSC: 68Qxx PDFBibTeX XMLCite \textit{M. J. Dinneen} et al., Theor. Comput. Sci. 940, 60--79 (2023; Zbl 07676465) Full Text: DOI arXiv
Korchmaros, Annachiara; Schaller, David; Hellmuth, Marc; Stadler, Peter F. Quasi-best match graphs. (English) Zbl 1510.05048 Discrete Appl. Math. 331, 104-125 (2023). MSC: 05C10 05C20 92B05 PDFBibTeX XMLCite \textit{A. Korchmaros} et al., Discrete Appl. Math. 331, 104--125 (2023; Zbl 1510.05048) Full Text: DOI arXiv
Ishii, Yuichiro Topological analysis of vertebrate phylogenetic trees utilizing Horton’s first law. (English) Zbl 1508.92171 J. Theor. Biol. 562, Article ID 111419, 10 p. (2023). MSC: 92D15 54H99 PDFBibTeX XMLCite \textit{Y. Ishii}, J. Theor. Biol. 562, Article ID 111419, 10 p. (2023; Zbl 1508.92171) Full Text: DOI
Snyman, Jandre; Fox, Colin; Bryant, David Parsimony and the rank of a flattening matrix. (English) Zbl 1508.92177 J. Math. Biol. 86, No. 3, Paper No. 44, 14 p. (2023). MSC: 92D15 60J20 05C90 PDFBibTeX XMLCite \textit{J. Snyman} et al., J. Math. Biol. 86, No. 3, Paper No. 44, 14 p. (2023; Zbl 1508.92177) Full Text: DOI arXiv
Stufler, Benedikt A branching process approach to level-\(k\) phylogenetic networks. (English) Zbl 1523.60028 Random Struct. Algorithms 61, No. 2, 397-421 (2022). MSC: 60C05 60J80 05C05 05C80 PDFBibTeX XMLCite \textit{B. Stufler}, Random Struct. Algorithms 61, No. 2, 397--421 (2022; Zbl 1523.60028) Full Text: DOI arXiv OA License
Lin, Bo; Monod, Anthea; Yoshida, Ruriko Tropical geometric variation of tree shapes. (English) Zbl 1507.14086 Discrete Comput. Geom. 68, No. 3, 817-849 (2022). MSC: 14T90 62R01 92-10 PDFBibTeX XMLCite \textit{B. Lin} et al., Discrete Comput. Geom. 68, No. 3, 817--849 (2022; Zbl 1507.14086) Full Text: DOI arXiv
Zhang, Louxin The Sackin index of simplex networks. (English) Zbl 1496.92063 Jin, Lingling (ed.) et al., Comparative genomics. 19th international conference, RECOMB-CG 2022, La Jolla, CA, USA, May 20–21, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13234, 52-67 (2022). MSC: 92D15 05C09 PDFBibTeX XMLCite \textit{L. Zhang}, Lect. Notes Comput. Sci. 13234, 52--67 (2022; Zbl 1496.92063) Full Text: DOI arXiv
Borst, Sander; van Iersel, Leo; Jones, Mark; Kelk, Steven New FPT algorithms for finding the temporal hybridization number for sets of phylogenetic trees. (English) Zbl 1494.92075 Algorithmica 84, No. 7, 2050-2087 (2022). MSC: 92D15 05C85 PDFBibTeX XMLCite \textit{S. Borst} et al., Algorithmica 84, No. 7, 2050--2087 (2022; Zbl 1494.92075) Full Text: DOI arXiv
Fischer, Mareike; Galla, Michelle; Wicke, Kristina Non-binary universal tree-based networks. (English) Zbl 1489.05130 J. Graph Algorithms Appl. 26, No. 1, 81-90 (2022). MSC: 05C82 05C05 PDFBibTeX XMLCite \textit{M. Fischer} et al., J. Graph Algorithms Appl. 26, No. 1, 81--90 (2022; Zbl 1489.05130) Full Text: DOI arXiv
Linz, Simone; Semple, Charles Non-essential arcs in phylogenetic networks. (English) Zbl 07526468 J. Comput. Syst. Sci. 128, 1-17 (2022). MSC: 68-XX PDFBibTeX XMLCite \textit{S. Linz} and \textit{C. Semple}, J. Comput. Syst. Sci. 128, 1--17 (2022; Zbl 07526468) Full Text: DOI arXiv
Hao, Xiaojuan; Eskridge, Kent M.; Wang, Dong Variational Bayesian inference for association over phylogenetic trees for microorganisms. (English) Zbl 07522677 J. Appl. Stat. 49, No. 5, 1140-1153 (2022). MSC: 62-XX PDFBibTeX XMLCite \textit{X. Hao} et al., J. Appl. Stat. 49, No. 5, 1140--1153 (2022; Zbl 07522677) Full Text: DOI
Yoshida, Ruriko; Cox, Shelby Tree topologies along a tropical line segment. (English) Zbl 1485.14118 Vietnam J. Math. 50, No. 2, 395-419 (2022). MSC: 14T15 05C05 92D15 14T90 PDFBibTeX XMLCite \textit{R. Yoshida} and \textit{S. Cox}, Vietnam J. Math. 50, No. 2, 395--419 (2022; Zbl 1485.14118) Full Text: DOI arXiv
Hellmuth, Marc; Schaller, David; Stadler, Peter F. Compatibility of partitions with trees, hierarchies, and split systems. (English) Zbl 1486.05243 Discrete Appl. Math. 314, 265-283 (2022). MSC: 05C70 05C05 05C90 92D15 PDFBibTeX XMLCite \textit{M. Hellmuth} et al., Discrete Appl. Math. 314, 265--283 (2022; Zbl 1486.05243) Full Text: DOI arXiv
Kelk, Steven; Meuwese, Ruben Sharp upper and lower bounds on a restricted class of convex characters. (English) Zbl 1486.05043 Electron. J. Comb. 29, No. 1, Research Paper P1.50, 17 p. (2022). MSC: 05C05 05A18 92B10 PDFBibTeX XMLCite \textit{S. Kelk} and \textit{R. Meuwese}, Electron. J. Comb. 29, No. 1, Research Paper P1.50, 17 p. (2022; Zbl 1486.05043) Full Text: DOI arXiv
Fuchs, Michael; Yu, Guan-Ru; Zhang, Louxin Asymptotic enumeration and distributional properties of galled networks. (English) Zbl 1485.92074 J. Comb. Theory, Ser. A 189, Article ID 105599, 28 p. (2022). MSC: 92D15 05C05 05C90 05C30 PDFBibTeX XMLCite \textit{M. Fuchs} et al., J. Comb. Theory, Ser. A 189, Article ID 105599, 28 p. (2022; Zbl 1485.92074) Full Text: DOI arXiv
Bordewich, Magnus; Linz, Simone; Owen, Megan; John, Katherine St.; Semple, Charles; Wicke, Kristina On the maximum agreement subtree conjecture for balanced trees. (English) Zbl 1482.05037 SIAM J. Discrete Math. 36, No. 1, 336-354 (2022). MSC: 05C05 92D15 PDFBibTeX XMLCite \textit{M. Bordewich} et al., SIAM J. Discrete Math. 36, No. 1, 336--354 (2022; Zbl 1482.05037) Full Text: DOI arXiv
Baños, Hector; Bushek, Nathaniel; Davidson, Ruth; Gross, Elizabeth; Harris, Pamela E.; Krone, Robert; Long, Colby; Stewart, Allen; Walker, Robert Phylogenetic trees. (English) Zbl 1483.13002 J. Softw. Algebra Geom. 11, 1-7 (2021). MSC: 13-04 05-04 92-04 13P25 05C05 14M25 92D15 13F65 PDFBibTeX XMLCite \textit{H. Baños} et al., J. Softw. Algebra Geom. 11, 1--7 (2021; Zbl 1483.13002) Full Text: DOI arXiv
Shu, Kevin; Ortegaray, Andrew; Berwick, Robert C.; Marcolli, Matilde Phylogenetics of Indo-European language families via an algebro-geometric analysis of their syntactic structures. (English) Zbl 07465805 Math. Comput. Sci. 15, No. 4, 803-857 (2021). MSC: 91F20 92D15 05C85 60J10 PDFBibTeX XMLCite \textit{K. Shu} et al., Math. Comput. Sci. 15, No. 4, 803--857 (2021; Zbl 07465805) Full Text: DOI arXiv Link
Hendriksen, Michael; Kapust, Nils On the comparison of incompatibility of split systems across different numbers of taxa. (English) Zbl 1467.92138 Bull. Math. Biol. 83, No. 7, Paper No. 78, 15 p. (2021). MSC: 92D15 92B10 PDFBibTeX XMLCite \textit{M. Hendriksen} and \textit{N. Kapust}, Bull. Math. Biol. 83, No. 7, Paper No. 78, 15 p. (2021; Zbl 1467.92138) Full Text: DOI arXiv
Jansson, Jesper; Mampentzidis, Konstantinos; Rajaby, Ramesh; Sung, Wing-Kin Computing the rooted triplet distance between phylogenetic networks. (English) Zbl 1516.68065 Algorithmica 83, No. 6, 1786-1828 (2021). MSC: 68R10 05C05 05C85 92D15 PDFBibTeX XMLCite \textit{J. Jansson} et al., Algorithmica 83, No. 6, 1786--1828 (2021; Zbl 1516.68065) Full Text: DOI
Rajan, R. Sundara; Shantrinal, A. Arul; Kumar, K. Jagadeesh; Rajalaxmi, T. M.; Rajasingh, Indra; Balasubramanian, Krishnan Biochemical and phylogenetic networks. II: \(X\)-trees and phylogenetic trees. (English) Zbl 1462.92030 J. Math. Chem. 59, No. 3, 699-718 (2021). MSC: 92C40 92D15 05C90 PDFBibTeX XMLCite \textit{R. S. Rajan} et al., J. Math. Chem. 59, No. 3, 699--718 (2021; Zbl 1462.92030) Full Text: DOI
Schaller, David; Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F. Corrigendum to: “Best match graphs”. (English) Zbl 07340472 J. Math. Biol. 82, No. 6, Paper No. 47, 9 p. (2021). MSC: 00Bxx 05C05 68R10 92-10 92B10 PDFBibTeX XMLCite \textit{D. Schaller} et al., J. Math. Biol. 82, No. 6, Paper No. 47, 9 p. (2021; Zbl 07340472) Full Text: DOI
Hersh, Patricia; Kenyon, Richard Shellability of face posets of electrical networks and the CW poset property. (English) Zbl 07336905 Adv. Appl. Math. 127, Article ID 102178, 37 p. (2021). MSC: 06A07 05E45 05C10 05C83 60J45 PDFBibTeX XMLCite \textit{P. Hersh} and \textit{R. Kenyon}, Adv. Appl. Math. 127, Article ID 102178, 37 p. (2021; Zbl 07336905) Full Text: DOI arXiv
Dinu, Rodica; Vodička, Martin Gorenstein property for phylogenetic trivalent trees. (English) Zbl 1483.14088 J. Algebra 575, 233-255 (2021). Reviewer: Maria Donten-Bury (Warszawa) MSC: 14M25 13P25 92D15 52B20 92B10 05C05 PDFBibTeX XMLCite \textit{R. Dinu} and \textit{M. Vodička}, J. Algebra 575, 233--255 (2021; Zbl 1483.14088) Full Text: DOI arXiv
Huber, Katharina T.; Linz, Simone; Moulton, Vincent The rigid hybrid number for two phylogenetic trees. (English) Zbl 1460.92142 J. Math. Biol. 82, No. 5, Paper No. 40, 29 p. (2021). Reviewer: Fatima T. Adylova (Tashkent) MSC: 92D15 05C05 PDFBibTeX XMLCite \textit{K. T. Huber} et al., J. Math. Biol. 82, No. 5, Paper No. 40, 29 p. (2021; Zbl 1460.92142) Full Text: DOI arXiv
Fischer, Mareike; Herbst, Lina; Galla, Michelle; Long, Yangjing; Wicke, Kristina Unrooted non-binary tree-based phylogenetic networks. (English) Zbl 1459.05042 Discrete Appl. Math. 294, 10-30 (2021). MSC: 05C05 05C45 05C90 92D15 92C42 PDFBibTeX XMLCite \textit{M. Fischer} et al., Discrete Appl. Math. 294, 10--30 (2021; Zbl 1459.05042) Full Text: DOI arXiv
Richter, Francisco; Haegeman, Bart; Etienne, Rampal S.; Wit, Ernst C. Introducing a general class of species diversification models for phylogenetic trees. (English) Zbl 07778429 Stat. Neerl. 74, No. 3, 261-274 (2020). MSC: 62Fxx 05Cxx 65Cxx PDFBibTeX XMLCite \textit{F. Richter} et al., Stat. Neerl. 74, No. 3, 261--274 (2020; Zbl 07778429) Full Text: DOI OA License
Afshar, Ramtin; Goodrich, Michael T.; Matias, Pedro; Osegueda, Martha C. Reconstructing biological and digital phylogenetic trees in parallel. (English) Zbl 07651142 Grandoni, Fabrizio (ed.) et al., 28th annual European symposium on algorithms. ESA 2020, September 7–9, 2020, Pisa, Italy, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 173, Article 3, 24 p. (2020). MSC: 68Wxx PDFBibTeX XMLCite \textit{R. Afshar} et al., LIPIcs -- Leibniz Int. Proc. Inform. 173, Article 3, 24 p. (2020; Zbl 07651142) Full Text: DOI arXiv
Jahn, Katharina; Beerenwinkel, Niko; Zhang, Louxin The Bourque distances for mutation trees of cancers. (English) Zbl 1518.92091 Kingsford, Carl (ed.) et al., 20th international workshop on algorithms in bioinformatics. WABI 2020, September 7–9, 2020, Pisa, Italy, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 172, Article 14, 22 p. (2020). MSC: 92D10 92D15 92-08 PDFBibTeX XMLCite \textit{K. Jahn} et al., LIPIcs -- Leibniz Int. Proc. Inform. 172, Article 14, 22 p. (2020; Zbl 1518.92091) Full Text: DOI
Rahman, Md. Saidur; Ahmed, Shareef A survey on pairwise compatibility graphs. (English) Zbl 1475.05077 AKCE Int. J. Graphs Comb. 17, No. 3, 788-795 (2020). Reviewer: Jomon K. Sebastian Kottarathil (Thodupuzh) MSC: 05C22 05C90 05C85 PDFBibTeX XMLCite \textit{Md. S. Rahman} and \textit{S. Ahmed}, AKCE Int. J. Graphs Comb. 17, No. 3, 788--795 (2020; Zbl 1475.05077) Full Text: DOI
Montazeri, Hesam; Little, Susan; Mozaffarilegha, Mozhgan; Beerenwinkel, Niko; DeGruttola, Victor Bayesian reconstruction of transmission trees from genetic sequences and uncertain infection times. (English) Zbl 1461.92115 Stat. Appl. Genet. Mol. Biol. 19, No. 4-6, Article ID 20190026, 13 p. (2020). MSC: 92D30 92D10 62P10 PDFBibTeX XMLCite \textit{H. Montazeri} et al., Stat. Appl. Genet. Mol. Biol. 19, No. 4--6, Article ID 20190026, 13 p. (2020; Zbl 1461.92115) Full Text: DOI arXiv
Hendriksen, Michael; Shore, Julia A. Phylosymmetric algebras: mathematical properties of a new tool in phylogenetics. (English) Zbl 1457.92127 Bull. Math. Biol. 82, No. 12, Paper No. 151, 17 p. (2020). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{M. Hendriksen} and \textit{J. A. Shore}, Bull. Math. Biol. 82, No. 12, Paper No. 151, 17 p. (2020; Zbl 1457.92127) Full Text: DOI arXiv
Bouvel, Mathilde; Gambette, Philippe; Mansouri, Marefatollah Counting phylogenetic networks of level 1 and 2. (English) Zbl 1455.05006 J. Math. Biol. 81, No. 6-7, 1357-1395 (2020). MSC: 05A15 05A16 92D15 PDFBibTeX XMLCite \textit{M. Bouvel} et al., J. Math. Biol. 81, No. 6--7, 1357--1395 (2020; Zbl 1455.05006) Full Text: DOI arXiv
Dovgoshey, Oleksiy Isomorphism of trees and isometry of ultrametric spaces. (English) Zbl 1457.54021 Theory Appl. Graphs 7, No. 2, Article 3, 39 p. (2020). Reviewer: Bruce Hughes (Nashville) MSC: 54E35 05C05 PDFBibTeX XMLCite \textit{O. Dovgoshey}, Theory Appl. Graphs 7, No. 2, Article 3, 39 p. (2020; Zbl 1457.54021) Full Text: DOI arXiv
Kelk, Steven; Linz, Simone New reduction rules for the tree bisection and reconnection distance. (English) Zbl 1451.05042 Ann. Comb. 24, No. 3, 475-502 (2020). MSC: 05C05 PDFBibTeX XMLCite \textit{S. Kelk} and \textit{S. Linz}, Ann. Comb. 24, No. 3, 475--502 (2020; Zbl 1451.05042) Full Text: DOI arXiv
Grinberg, Darij; Petrov, Fedor The Bhargava greedoid. (English) Zbl 1447.05048 Sémin. Lothar. Comb. 84B, Article 47, 12 p. (2020). MSC: 05B35 05A10 11B65 52B40 PDFBibTeX XMLCite \textit{D. Grinberg} and \textit{F. Petrov}, Sémin. Lothar. Comb. 84B, Article 47, 12 p. (2020; Zbl 1447.05048) Full Text: Link
Spade, David A. An extended model for phylogenetic maximum likelihood based on discrete morphological characters. (English) Zbl 1445.92209 Stat. Appl. Genet. Mol. Biol. 19, No. 1, Article ID 20190029, 11 p. (2020). MSC: 92D15 62P10 PDFBibTeX XMLCite \textit{D. A. Spade}, Stat. Appl. Genet. Mol. Biol. 19, No. 1, Article ID 20190029, 11 p. (2020; Zbl 1445.92209) Full Text: DOI
Anaya, Maria; Anipchenko-Ulaj, Olga; Ashfaq, Aisha; Chiu, Joyce; Kaiser, Mahedi; Ohsawa, Max Shoji; Owen, Megan; Pavlechko, Ella; St. John, Katherine; Suleria, Shivam; Thompson, Keith; Yap, Corrine Properties for the Fréchet mean in Billera-Holmes-Vogtmann treespace. (English) Zbl 1447.62139 Adv. Appl. Math. 120, Article ID 102072, 28 p. (2020). MSC: 62R20 62H22 62P10 92D10 PDFBibTeX XMLCite \textit{M. Anaya} et al., Adv. Appl. Math. 120, Article ID 102072, 28 p. (2020; Zbl 1447.62139) Full Text: DOI arXiv
Bartoszek, Krzysztof Limit distribution of the quartet balance index for Aldous’s \((\beta \ge 0)\)-model. (English) Zbl 1447.05181 Appl. Math. 47, No. 1, 29-44 (2020). MSC: 05C80 05C05 05C09 05C90 60F05 60J85 62P10 92B10 92D15 PDFBibTeX XMLCite \textit{K. Bartoszek}, Appl. Math. 47, No. 1, 29--44 (2020; Zbl 1447.05181) Full Text: DOI arXiv
Markin, Alexey On the extremal maximum agreement subtree problem. (English) Zbl 1447.05056 Discrete Appl. Math. 285, 612-620 (2020). MSC: 05C05 05C35 PDFBibTeX XMLCite \textit{A. Markin}, Discrete Appl. Math. 285, 612--620 (2020; Zbl 1447.05056) Full Text: DOI arXiv
Grindstaff, Gillian The isometry group of phylogenetic tree space is \(S_n\). (English) Zbl 1446.05019 Proc. Am. Math. Soc. 148, No. 10, 4225-4233 (2020). MSC: 05C05 05C22 52C45 92B10 PDFBibTeX XMLCite \textit{G. Grindstaff}, Proc. Am. Math. Soc. 148, No. 10, 4225--4233 (2020; Zbl 1446.05019) Full Text: DOI arXiv
Eppstein, David; Havvaei, Elham Parameterized leaf power recognition via embedding into graph products. (English) Zbl 1452.68135 Algorithmica 82, No. 8, 2337-2359 (2020). MSC: 68R10 03B70 05C05 05C76 05C85 68Q27 92D15 PDFBibTeX XMLCite \textit{D. Eppstein} and \textit{E. Havvaei}, Algorithmica 82, No. 8, 2337--2359 (2020; Zbl 1452.68135) Full Text: DOI Link
Gunawan, Andreas D. M.; Rathin, Jeyaram; Zhang, Louxin Counting and enumerating galled networks. (English) Zbl 1442.05093 Discrete Appl. Math. 283, 644-654 (2020). MSC: 05C30 05C05 05C82 92D15 PDFBibTeX XMLCite \textit{A. D. M. Gunawan} et al., Discrete Appl. Math. 283, 644--654 (2020; Zbl 1442.05093) Full Text: DOI arXiv
Fischer, Mareike; Francis, Andrew The space of tree-based phylogenetic networks. (English) Zbl 1444.92070 Bull. Math. Biol. 82, No. 6, Paper No. 70, 17 p. (2020). MSC: 92D15 PDFBibTeX XMLCite \textit{M. Fischer} and \textit{A. Francis}, Bull. Math. Biol. 82, No. 6, Paper No. 70, 17 p. (2020; Zbl 1444.92070) Full Text: DOI arXiv
Coronado, Tomás M.; Fischer, Mareike; Herbst, Lina; Rosselló, Francesc; Wicke, Kristina On the minimum value of the Colless index and the bifurcating trees that achieve it. (English) Zbl 1443.92126 J. Math. Biol. 80, No. 7, 1993-2054 (2020). MSC: 92D15 05C05 05C90 PDFBibTeX XMLCite \textit{T. M. Coronado} et al., J. Math. Biol. 80, No. 7, 1993--2054 (2020; Zbl 1443.92126) Full Text: DOI arXiv
Geiß, Manuela; Laffitte, Marcos E. González; Sánchez, Alitzel López; Valdivia, Dulce I.; Hellmuth, Marc; Rosales, Maribel Hernández; Stadler, Peter F. Best match graphs and reconciliation of gene trees with species trees. (English) Zbl 1434.05035 J. Math. Biol. 80, No. 5, 1459-1495 (2020). MSC: 05C05 05C62 05C90 92B10 PDFBibTeX XMLCite \textit{M. Geiß} et al., J. Math. Biol. 80, No. 5, 1459--1495 (2020; Zbl 1434.05035) Full Text: DOI arXiv
Hendriksen, Michael; Francis, Andrew A partial order and cluster-similarity metric on rooted phylogenetic trees. (English) Zbl 1435.92045 J. Math. Biol. 80, No. 5, 1265-1290 (2020). Reviewer: Fatima T. Adylova (Tashkent) MSC: 92D15 05C05 06A07 PDFBibTeX XMLCite \textit{M. Hendriksen} and \textit{A. Francis}, J. Math. Biol. 80, No. 5, 1265--1290 (2020; Zbl 1435.92045) Full Text: DOI arXiv
Laudanno, Giovanni; Haegeman, Bart; Etienne, Rampal S. Additional analytical support for a new method to compute the likelihood of diversification models. (English) Zbl 1432.92065 Bull. Math. Biol. 82, No. 2, Paper No. 22, 22 p. (2020). MSC: 92D15 60J85 92D40 PDFBibTeX XMLCite \textit{G. Laudanno} et al., Bull. Math. Biol. 82, No. 2, Paper No. 22, 22 p. (2020; Zbl 1432.92065) Full Text: DOI
Matsieva, Julia; St. John, Katherine Most parsimonious likelihood exhibits multiple optima for compatible characters. (English) Zbl 1432.92067 Bull. Math. Biol. 82, No. 1, Paper No. 10, 16 p. (2020). MSC: 92D15 PDFBibTeX XMLCite \textit{J. Matsieva} and \textit{K. St. John}, Bull. Math. Biol. 82, No. 1, Paper No. 10, 16 p. (2020; Zbl 1432.92067) Full Text: DOI
Geiß, Manuela; Stadler, Peter F.; Hellmuth, Marc Reciprocal best match graphs. (English) Zbl 1433.05303 J. Math. Biol. 80, No. 3, 865-953 (2020). MSC: 05C90 05C05 05C15 92D15 PDFBibTeX XMLCite \textit{M. Geiß} et al., J. Math. Biol. 80, No. 3, 865--953 (2020; Zbl 1433.05303) Full Text: DOI arXiv
Stahn, Hubert Biodiversity, Shapley value and phylogenetic trees: some remarks. (English) Zbl 1435.92046 J. Math. Biol. 80, No. 3, 717-741 (2020). Reviewer: Andrey Zahariev (Plovdiv) MSC: 92D15 91A12 91A80 05C05 PDFBibTeX XMLCite \textit{H. Stahn}, J. Math. Biol. 80, No. 3, 717--741 (2020; Zbl 1435.92046) Full Text: DOI Link
Hayamizu, Momoko; Huber, Katharina T.; Moulton, Vincent; Murakami, Yukihiro Recognizing and realizing cactus metrics. (English) Zbl 1447.05186 Inf. Process. Lett. 157, Article ID 105916, 5 p. (2020). MSC: 05C82 05C12 05C22 05C05 05C85 05C90 92D15 68Q25 PDFBibTeX XMLCite \textit{M. Hayamizu} et al., Inf. Process. Lett. 157, Article ID 105916, 5 p. (2020; Zbl 1447.05186) Full Text: DOI arXiv
Huber, K. T.; Scholz, G. E. Phylogenetic networks that are their own fold-ups. (English) Zbl 1429.05042 Adv. Appl. Math. 113, Article ID 101959, 24 p. (2020). MSC: 05C05 05C20 05C85 05D15 92D15 05C90 PDFBibTeX XMLCite \textit{K. T. Huber} and \textit{G. E. Scholz}, Adv. Appl. Math. 113, Article ID 101959, 24 p. (2020; Zbl 1429.05042) Full Text: DOI arXiv Link
Eppstein, David; Havvaei, Elham Parameterized leaf power recognition via embedding into graph products. (English) Zbl 1520.68121 Paul, Christophe (ed.) et al., 13th international symposium on parameterized and exact computation, IPEC 2018, August 22–24, 2018, Helsinki, Finland. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 115, Article 16, 14 p. (2019). MSC: 68R10 03B70 05C05 05C76 05C85 68Q27 92D15 PDFBibTeX XMLCite \textit{D. Eppstein} and \textit{E. Havvaei}, LIPIcs -- Leibniz Int. Proc. Inform. 115, Article 16, 14 p. (2019; Zbl 1520.68121) Full Text: DOI arXiv
Hendriksen, Michael; Francis, Andrew Tree-metrizable HGT networks. (English) Zbl 1433.92029 Math. Biosci. 318, Article ID 108283, 12 p. (2019). MSC: 92D15 92C42 PDFBibTeX XMLCite \textit{M. Hendriksen} and \textit{A. Francis}, Math. Biosci. 318, Article ID 108283, 12 p. (2019; Zbl 1433.92029) Full Text: DOI arXiv
Janssen, Remie; Klawitter, Jonathan Rearrangement operations on unrooted phylogenetic networks. (English) Zbl 1432.05101 Theory Appl. Graphs 6, No. 2, Article 6, 31 p. (2019). MSC: 05C82 05C05 PDFBibTeX XMLCite \textit{R. Janssen} and \textit{J. Klawitter}, Theory Appl. Graphs 6, No. 2, Article 6, 31 p. (2019; Zbl 1432.05101) Full Text: DOI arXiv
Grindstaff, Gillian; Owen, Megan Representations of partial leaf sets in phylogenetic tree space. (English) Zbl 1432.92064 SIAM J. Appl. Algebra Geom. 3, No. 4, 691-720 (2019). Reviewer: Fatima T. Adylova (Tashkent) MSC: 92D15 52C45 05C05 PDFBibTeX XMLCite \textit{G. Grindstaff} and \textit{M. Owen}, SIAM J. Appl. Algebra Geom. 3, No. 4, 691--720 (2019; Zbl 1432.92064) Full Text: DOI Link
Hellmuth, Marc; Huber, Katharina T.; Moulton, Vincent Reconciling event-labeled gene trees with MUL-trees and species networks. (English) Zbl 1423.05185 J. Math. Biol. 79, No. 5, 1885-1925 (2019). MSC: 05C90 05C05 92D15 PDFBibTeX XMLCite \textit{M. Hellmuth} et al., J. Math. Biol. 79, No. 5, 1885--1925 (2019; Zbl 1423.05185) Full Text: DOI arXiv Link
Kelk, Steven; Linz, Simone A tight kernel for computing the tree bisection and reconnection distance between two phylogenetic trees. (English) Zbl 1430.68130 SIAM J. Discrete Math. 33, No. 3, 1556-1574 (2019). MSC: 68Q27 05C05 68W40 92D15 PDFBibTeX XMLCite \textit{S. Kelk} and \textit{S. Linz}, SIAM J. Discrete Math. 33, No. 3, 1556--1574 (2019; Zbl 1430.68130) Full Text: DOI arXiv
Diestel, Reinhard; Erde, Joshua; Weißauer, Daniel Structural submodularity and tangles in abstract separation systems. (English) Zbl 1417.05162 J. Comb. Theory, Ser. A 167, 155-180 (2019). MSC: 05C70 05C05 05C83 PDFBibTeX XMLCite \textit{R. Diestel} et al., J. Comb. Theory, Ser. A 167, 155--180 (2019; Zbl 1417.05162) Full Text: DOI arXiv
Coronado, Tomás M.; Mir, Arnau; Rosselló, Francesc; Valiente, Gabriel A balance index for phylogenetic trees based on rooted quartets. (English) Zbl 1416.05069 J. Math. Biol. 79, No. 3, 1105-1148 (2019). MSC: 05C05 68Q25 92B10 PDFBibTeX XMLCite \textit{T. M. Coronado} et al., J. Math. Biol. 79, No. 3, 1105--1148 (2019; Zbl 1416.05069) Full Text: DOI arXiv Link
Dávila Felipe, Miraine; Domelevo Entfellner, Jean-Baka; Lemoine, Frédéric; Truszkowski, Jakub; Gascuel, Olivier Distribution and asymptotic behavior of the phylogenetic transfer distance. (English) Zbl 1418.92082 J. Math. Biol. 79, No. 2, 485-508 (2019). MSC: 92D15 62P10 PDFBibTeX XMLCite \textit{M. Dávila Felipe} et al., J. Math. Biol. 79, No. 2, 485--508 (2019; Zbl 1418.92082) Full Text: DOI
Warnow, Tandy (ed.) Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret. (English) Zbl 1429.92003 Computational Biology 29. Cham: Springer (ISBN 978-3-030-10836-6/hbk; 978-3-030-10837-3/ebook). xxv, 410 p. (2019). Reviewer: Irina Ioana Mohorianu (Oxford) MSC: 92-06 00B15 92D15 92C42 90C10 PDFBibTeX XMLCite \textit{T. Warnow} (ed.), Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret. Cham: Springer (2019; Zbl 1429.92003) Full Text: DOI Link
Beaudouin-Lafon, Matthew; Chen, Serena; Karst, Nathaniel; Troxell, Denise Sakai; Zheng, Xudong Pairwise compatibility graphs: complete characterization for wheels. (English) Zbl 1414.05097 Involve 12, No. 5, 871-882 (2019). MSC: 05C12 05C78 05C05 PDFBibTeX XMLCite \textit{M. Beaudouin-Lafon} et al., Involve 12, No. 5, 871--882 (2019; Zbl 1414.05097) Full Text: DOI
Chor, Benny; Erdős, Péter L.; Komornik, Yonatan A high quartet distance construction. (English) Zbl 1414.05077 Ann. Comb. 23, No. 1, 51-65 (2019). MSC: 05C05 05C12 68R15 92D15 PDFBibTeX XMLCite \textit{B. Chor} et al., Ann. Comb. 23, No. 1, 51--65 (2019; Zbl 1414.05077) Full Text: DOI arXiv
Atkins, Ross; McDiarmid, Colin Extremal distances for subtree transfer operations in binary trees. (English) Zbl 1414.05074 Ann. Comb. 23, No. 1, 1-26 (2019). MSC: 05C05 05C12 05C35 05C76 92D15 PDFBibTeX XMLCite \textit{R. Atkins} and \textit{C. McDiarmid}, Ann. Comb. 23, No. 1, 1--26 (2019; Zbl 1414.05074) Full Text: DOI arXiv
Herbst, Lina; Li, Heyang; Steel, Mike Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony. (English) Zbl 1409.05055 J. Math. Biol. 78, No. 6, 1953-1979 (2019). MSC: 05C05 92D15 60J10 PDFBibTeX XMLCite \textit{L. Herbst} et al., J. Math. Biol. 78, No. 6, 1953--1979 (2019; Zbl 1409.05055) Full Text: DOI arXiv
Hoppe, Anica; Türpitz, Sonja; Steel, Mike Species notions that combine phylogenetic trees and phenotypic partitions. (English) Zbl 1407.92092 J. Math. Biol. 78, No. 1-2, 117-134 (2019). MSC: 92D15 92D10 05C05 05C90 PDFBibTeX XMLCite \textit{A. Hoppe} et al., J. Math. Biol. 78, No. 1--2, 117--134 (2019; Zbl 1407.92092) Full Text: DOI arXiv
Pons, Joan Carles; Semple, Charles; Steel, Mike Tree-based networks: characterisations, metrics, and support trees. (English) Zbl 1407.05055 J. Math. Biol. 78, No. 4, 899-918 (2019). MSC: 05C05 05C85 05C82 92D15 PDFBibTeX XMLCite \textit{J. C. Pons} et al., J. Math. Biol. 78, No. 4, 899--918 (2019; Zbl 1407.05055) Full Text: DOI arXiv
Forcey, Stefan; Hamerlinck, Gabriela; Keefe, Logan; Sands, William The minimum evolution problem in phylogenetics: polytopes, linear programming, and interpretation. (English) Zbl 1409.92173 Robeva, Raina (ed.) et al., Algebraic and combinatorial computational biology. Amsterdam: Elsevier/Academic Press. Math. Sci. Eng., 319-349 (2019). MSC: 92D15 52B99 90C05 92-04 PDFBibTeX XMLCite \textit{S. Forcey} et al., in: Algebraic and combinatorial computational biology. Amsterdam: Elsevier/Academic Press. 319--349 (2019; Zbl 1409.92173) Full Text: DOI
Dannenberg, Katharina; Jansson, Jesper; Lingas, Andrzej; Lundell, Eva-Marta The approximability of maximum rooted triplets consistency with fan triplets and forbidden triplets. (English) Zbl 1406.05099 Discrete Appl. Math. 257, 101-114 (2019). MSC: 05C85 05C05 68W25 90C39 90C10 PDFBibTeX XMLCite \textit{K. Dannenberg} et al., Discrete Appl. Math. 257, 101--114 (2019; Zbl 1406.05099) Full Text: DOI
Tahir, Daniah; Glémin, Sylvain; Lascoux, Martin; Kaj, Ingemar Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree. (English) Zbl 1406.92438 J. Theor. Biol. 461, 189-203 (2019). MSC: 92D15 60J85 PDFBibTeX XMLCite \textit{D. Tahir} et al., J. Theor. Biol. 461, 189--203 (2019; Zbl 1406.92438) Full Text: DOI HAL
Lafond, M.; El-Mabrouk, N.; Huber, K. T.; Moulton, V. The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. (English) Zbl 1410.68172 Theor. Comput. Sci. 760, 15-34 (2019). MSC: 68Q25 05C05 92D15 PDFBibTeX XMLCite \textit{M. Lafond} et al., Theor. Comput. Sci. 760, 15--34 (2019; Zbl 1410.68172) Full Text: DOI arXiv Link
Johnson, Matthew P. Deciding the closure of inconsistent rooted triples is NP-complete. (English) Zbl 07561366 Hsu, Wen-Lian (ed.) et al., 29th international symposium on algorithms and computation, ISAAC 2018, December 16–19, 2018, Jiaoxi, Yilan, Taiwan. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 123, Article 12, 13 p. (2018). MSC: 68Q17 68Q25 92D15 PDFBibTeX XMLCite \textit{M. P. Johnson}, LIPIcs -- Leibniz Int. Proc. Inform. 123, Article 12, 13 p. (2018; Zbl 07561366) Full Text: DOI arXiv
Gawrychowski, Pawel; Landau, Gad M.; Sung, Wing-Kin; Weimann, Oren A faster construction of greedy consensus trees. (English) Zbl 1499.68427 Chatzigiannakis, Ioannis (ed.) et al., 45th international colloquium on automata, languages, and programming. ICALP 2018, Prague, Czech Republic, July 9–13, 2018. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 107, Article 63, 14 p. (2018). MSC: 68W40 92D15 PDFBibTeX XMLCite \textit{P. Gawrychowski} et al., LIPIcs -- Leibniz Int. Proc. Inform. 107, Article 63, 14 p. (2018; Zbl 1499.68427) Full Text: DOI arXiv
Prodinger, Helmut A bijection between phylogenetic trees and plane oriented recursive trees. (English) Zbl 1444.05042 Rend. Ist. Mat. Univ. Trieste 50, 133-137 (2018). MSC: 05C05 05C78 05C30 05A19 05A10 PDFBibTeX XMLCite \textit{H. Prodinger}, Rend. Ist. Mat. Univ. Trieste 50, 133--137 (2018; Zbl 1444.05042) Full Text: DOI arXiv
Whidden, Chris; Matsen, Frederick A. IV Efficiently inferring pairwise subtree prune-and-regraft adjacencies between phylogenetic trees. (English) Zbl 1435.92047 Nebel, Markus (ed.) et al., Proceedings of the 15th workshop on analytic algorithmics and combinatorics, ANALCO ’18, New Orleans, LA, January 8–9, 2018. Philadelphia, PA: Society for Industrial and Applied Mathematics (SIAM). 77-91 (2018). MSC: 92D15 05C90 68W32 PDFBibTeX XMLCite \textit{C. Whidden} and \textit{F. A. Matsen IV}, in: Proceedings of the 15th workshop on analytic algorithmics and combinatorics, ANALCO '18, New Orleans, LA, January 8--9, 2018. Philadelphia, PA: Society for Industrial and Applied Mathematics (SIAM). 77--91 (2018; Zbl 1435.92047) Full Text: DOI arXiv
van Iersel, Leo; Kelk, Steven; Stamoulis, Georgios; Stougie, Leen; Boes, Olivier On unrooted and root-uncertain variants of several well-known phylogenetic network problems. (English) Zbl 1410.68178 Algorithmica 80, No. 11, 2993-3022 (2018). MSC: 68Q25 68Q17 92D15 PDFBibTeX XMLCite \textit{L. van Iersel} et al., Algorithmica 80, No. 11, 2993--3022 (2018; Zbl 1410.68178) Full Text: DOI arXiv
Casanellas, Marta Kimura’s evolutive model: a linkage between algebra, statistics and biology. (Spanish) Zbl 1408.92016 Gac. R. Soc. Mat. Esp. 21, No. 2, 241-257 (2018). Reviewer: Carlos A. dos Santos Braumann (Évora) MSC: 92D15 92D10 60J20 PDFBibTeX XMLCite \textit{M. Casanellas}, Gac. R. Soc. Mat. Esp. 21, No. 2, 241--257 (2018; Zbl 1408.92016)
Hendriksen, Michael Tree-based unrooted nonbinary phylogenetic networks. (English) Zbl 1400.92366 Math. Biosci. 302, 131-138 (2018). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{M. Hendriksen}, Math. Biosci. 302, 131--138 (2018; Zbl 1400.92366) Full Text: DOI arXiv
Bordewich, Magnus; Semple, Charles A universal tree-based network with the minimum number of reticulations. (English) Zbl 1398.05186 Discrete Appl. Math. 250, 357-362 (2018). MSC: 05C82 05C05 05C85 92D15 68Q25 PDFBibTeX XMLCite \textit{M. Bordewich} and \textit{C. Semple}, Discrete Appl. Math. 250, 357--362 (2018; Zbl 1398.05186) Full Text: DOI arXiv Link
Geiß, Manuela; Anders, John; Stadler, Peter F.; Wieseke, Nicolas; Hellmuth, Marc Reconstructing gene trees from Fitch’s xenology relation. (English) Zbl 1396.05025 J. Math. Biol. 77, No. 5, 1459-1491 (2018). MSC: 05C05 05C85 68R05 68R10 PDFBibTeX XMLCite \textit{M. Geiß} et al., J. Math. Biol. 77, No. 5, 1459--1491 (2018; Zbl 1396.05025) Full Text: DOI arXiv
Huber, Katharina T.; Moulton, Vincent; Semple, Charles; Wu, Taoyang Quarnet inference rules for level-1 networks. (English) Zbl 1398.92175 Bull. Math. Biol. 80, No. 8, 2137-2153 (2018). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{K. T. Huber} et al., Bull. Math. Biol. 80, No. 8, 2137--2153 (2018; Zbl 1398.92175) Full Text: DOI arXiv
Shi, Feng; Chen, Jianer; Feng, Qilong; Wang, Jianxin A parameterized algorithm for the maximum agreement forest problem on multiple rooted multifurcating trees. (English) Zbl 1400.92379 J. Comput. Syst. Sci. 97, 28-44 (2018). MSC: 92D15 05C05 05C85 68W40 PDFBibTeX XMLCite \textit{F. Shi} et al., J. Comput. Syst. Sci. 97, 28--44 (2018; Zbl 1400.92379) Full Text: DOI arXiv
Baiocchi, Pierluigi; Calamoneri, Tiziana; Monti, Angelo; Petreschi, Rossella Graphs that are not pairwise compatible: a new proof technique (extended abstract). (English) Zbl 1511.05197 Iliopoulos, Costas (ed.) et al., Combinatorial algorithms. 29th international workshop, IWOCA 2018, Singapore, July 16–19, 2018. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 10979, 39-51 (2018). MSC: 05C75 05C05 05C10 05C22 92D15 PDFBibTeX XMLCite \textit{P. Baiocchi} et al., Lect. Notes Comput. Sci. 10979, 39--51 (2018; Zbl 1511.05197) Full Text: DOI Link
Grünewald, Stefan; Long, Yangjing; Wu, Yaokun Reconstructing unrooted phylogenetic trees from symbolic ternary metrics. (English) Zbl 1396.92058 Bull. Math. Biol. 80, No. 6, 1563-1577 (2018). MSC: 92D15 05C05 05C15 05C90 PDFBibTeX XMLCite \textit{S. Grünewald} et al., Bull. Math. Biol. 80, No. 6, 1563--1577 (2018; Zbl 1396.92058) Full Text: DOI arXiv
Kang, Qiwen; Yoshida, Ruriko Estimating tropical principal components using the Metropolis-Hastings algorithm. (Estimating tropical principal components using Metropolis Hasting algorithm.) (English) Zbl 1395.62141 Davenport, James H. (ed.) et al., Mathematical software – ICMS 2018. 6th international conference, South Bend, IN, USA, July 24–27, 2018. Proceedings. Cham: Springer (ISBN 978-3-319-96417-1/pbk; 978-3-319-96418-8/ebook). Lecture Notes in Computer Science 10931, 272-279 (2018). MSC: 62H25 14T05 62P10 92D10 92D15 PDFBibTeX XMLCite \textit{Q. Kang} and \textit{R. Yoshida}, Lect. Notes Comput. Sci. 10931, 272--279 (2018; Zbl 1395.62141) Full Text: DOI
Gambette, Philippe; Gunawan, Andreas D. M.; Labarre, Anthony; Vialette, Stéphane; Zhang, Louxin Solving the tree containment problem in linear time for nearly stable phylogenetic networks. (English) Zbl 1390.05083 Discrete Appl. Math. 246, 62-79 (2018). MSC: 05C20 05C78 05C05 05C82 PDFBibTeX XMLCite \textit{P. Gambette} et al., Discrete Appl. Math. 246, 62--79 (2018; Zbl 1390.05083) Full Text: DOI Link
Wicke, Kristina; Fischer, Mareike Phylogenetic diversity and biodiversity indices on phylogenetic networks. (English) Zbl 1392.92064 Math. Biosci. 298, 80-90 (2018). MSC: 92D15 92D10 05C05 PDFBibTeX XMLCite \textit{K. Wicke} and \textit{M. Fischer}, Math. Biosci. 298, 80--90 (2018; Zbl 1392.92064) Full Text: DOI arXiv
Francis, Andrew; Moulton, Vincent Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution. (English) Zbl 1397.92490 J. Theor. Biol. 446, 160-167 (2018). MSC: 92D15 05C90 92D10 PDFBibTeX XMLCite \textit{A. Francis} and \textit{V. Moulton}, J. Theor. Biol. 446, 160--167 (2018; Zbl 1397.92490) Full Text: DOI arXiv Link
Gross, Elizabeth; Long, Colby Distinguishing phylogenetic networks. (English) Zbl 1392.92059 SIAM J. Appl. Algebra Geom. 2, No. 1, 72-93 (2018). MSC: 92D15 92D10 05C05 PDFBibTeX XMLCite \textit{E. Gross} and \textit{C. Long}, SIAM J. Appl. Algebra Geom. 2, No. 1, 72--93 (2018; Zbl 1392.92059) Full Text: DOI arXiv
Grünewald, Stefan; Huber, Katharina T.; Moulton, Vincent; Steel, Mike Combinatorial properties of triplet covers for binary trees. (English) Zbl 1388.05038 Adv. Appl. Math. 99, 59-82 (2018). MSC: 05C05 05C70 05C12 92D15 PDFBibTeX XMLCite \textit{S. Grünewald} et al., Adv. Appl. Math. 99, 59--82 (2018; Zbl 1388.05038) Full Text: DOI arXiv Link
Hellmuth, Marc; Hernandez-Rosales, Maribel; Long, Yangjing; Stadler, Peter F. Inferring phylogenetic trees from the knowledge of rare evolutionary events. (English) Zbl 1386.05186 J. Math. Biol. 76, No. 7, 1623-1653 (2018). MSC: 05C90 05C05 92D15 PDFBibTeX XMLCite \textit{M. Hellmuth} et al., J. Math. Biol. 76, No. 7, 1623--1653 (2018; Zbl 1386.05186) Full Text: DOI arXiv
Gavryushkin, Alex; Whidden, Chris; Matsen, Frederick A. The combinatorics of discrete time-trees: theory and open problems. (English) Zbl 1391.92030 J. Math. Biol. 76, No. 5, 1101-1121 (2018). MSC: 92D15 92D10 68R10 68R05 05C05 PDFBibTeX XMLCite \textit{A. Gavryushkin} et al., J. Math. Biol. 76, No. 5, 1101--1121 (2018; Zbl 1391.92030) Full Text: DOI