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Found 1,380 Documents (Results 1–100)

Cell-level pathway scoring comparison with a biologically constrained variational autoencoder. (English) Zbl 07810884

Pang, Jun (ed.) et al., Computational methods in systems biology. 21st international conference, CMSB 2023, Luxembourg City, Luxembourg, September 13–15, 2023. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 14137, 62-77 (2023).
MSC:  92D20
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Unsupervised integration of single-cell multi-omics datasets with disproportionate cell-type representation. (English) Zbl 1496.92065

Pe’er, Itsik (ed.), Research in computational molecular biology. 26th annual international conference, RECOMB 2022, San Diego, CA, USA, May 22–25, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13278, 3-19 (2022).
MSC:  92D20 92C37
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Benchmarking penalized regression methods in machine learning for single cell RNA sequencing data. (English) Zbl 1496.92075

Jin, Lingling (ed.) et al., Comparative genomics. 19th international conference, RECOMB-CG 2022, La Jolla, CA, USA, May 20–21, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13234, 295-310 (2022).
MSC:  92D20 68T05 62P10
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Compression of multiple \(k\)-mer sets by iterative SPSS decomposition. (English) Zbl 1519.92165

Carbone, Alessandra (ed.) et al., 21st international workshop on algorithms in bioinformatics, WABI 2021, August 2–4, 2021, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 201, Article 12, 17 p. (2021).
MSC:  92D20 92-08
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Probabilistic models of \(k\)-mer frequencies (extended abstract). (English) Zbl 07495171

De Mol, Liesbeth (ed.) et al., Connecting with computability. 17th conference on computability in Europe, CiE 2021, virtual event, Ghent, Belgium, July 5–9, 2021. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12813, 227-236 (2021).
MSC:  68Qxx
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Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen. (English) Zbl 1482.92002

Chapman & Hall/CRC Computational Biology Series. Boca Raton, FL: CRC Press (ISBN 978-1-4987-8185-5/hbk; 978-0-367-63460-5/pbk; 978-0-429-08431-7/ebook). xxii, 440 p. (2021).
MSC:  92-02 92D10 62P10
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A graph-theoretic barcode ordering model for linked-reads. (English) Zbl 1518.92107

Kingsford, Carl (ed.) et al., 20th international workshop on algorithms in bioinformatics. WABI 2020, September 7–9, 2020, Pisa, Italy, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 172, Article 11, 17 p. (2020).
MSC:  92D20 05C90 92-08
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Economic genome assembly from low coverage illumina and nanopore data. (English) Zbl 1518.92109

Kingsford, Carl (ed.) et al., 20th international workshop on algorithms in bioinformatics. WABI 2020, September 7–9, 2020, Pisa, Italy, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 172, Article 10, 22 p. (2020).
MSC:  92D20 92D10 92-08
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