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Author ID: holmes.susan-p Recent zbMATH articles by "Holmes, Susan P."
Published as: Holmes, Susan; Holmes, Susan P.
Homepage: http://statweb.stanford.edu/~susan
External Links: MGP · ORCID · Wikidata · dblp · GND · IdRef · theses.fr

Publications by Year

Citations contained in zbMATH Open

39 Publications have been cited 722 times in 661 Documents Cited by Year
Geometry of the space of phylogenetic trees. Zbl 0995.92035
Billera, Louis J.; Holmes, Susan P.; Vogtmann, Karen
172
2001
Analysis of a nonreversible Markov chain sampler. Zbl 1083.60516
Diaconis, Persi; Holmes, Susan; Neal, Radford M.
80
2000
Sequential Monte Carlo methods for statistical analysis of tables. Zbl 1117.62310
Chen, Yuguo; Diaconis, Persi; Holmes, Susan P.; Liu, Jun S.
75
2005
Error distribution for gene expression data. Zbl 1083.62114
Purdom, Elizabeth; Holmes, Susan P.
35
2005
Sampling from a manifold. Zbl 1356.62015
Diaconis, Persi; Holmes, Susan; Shahshahani, Mehrdad
32
2013
Threshold graph limits and random threshold graphs. Zbl 1184.68356
Diaconis, Persi; Holmes, Susan; Janson, Svante
27
2008
Statistical problems involving permutations with restricted positions. Zbl 1373.62176
Diaconis, Persi; Graham, Ronald; Holmes, Susan P.
27
2001
Bootstrap confidence levels for phylogenetic trees. (Corrected version). Zbl 0871.62092
Efron, Bradley; Halloran, Elizabeth; Holmes, Susan
25
1996
Random walks on trees and matchings. Zbl 1007.60071
Diaconis, Persi; Holmes, Susan
23
2002
Matchings and phylogenetic trees. Zbl 0908.92023
Diaconis, Persi W.; Holmes, Susan P.
21
1998
Dynamical bias in the coin toss. Zbl 1513.62009
Diaconis, Persi; Holmes, Susan; Montgomery, Richard
19
2007
A Bayesian peek into Feller volume. I. Zbl 1192.60003
Diaconis, Persi; Holmes, Susan
17
2002
Horseshoes in multidimensional scaling and local kernel methods. Zbl 1149.62316
Diaconis, Persi; Goel, Sharad; Holmes, Susan
15
2008
Measuring multivariate association and beyond. Zbl 1359.62212
Josse, Julie; Holmes, Susan
15
2016
Geomstats: a Python package for Riemannian geometry in machine learning. Zbl 07307485
Miolane, Nina; Guigui, Nicolas; Le Brigant, Alice; Mathe, Johan; Hou, Benjamin; Thanwerdas, Yann; Heyder, Stefan; Peltre, Olivier; Koep, Niklas; Zaatiti, Hadi; Hajri, Hatem; Cabanes, Yann; Gerald, Thomas; Chauchat, Paul; Shewmake, Christian; Brooks, Daniel; Kainz, Bernhard; Donnat, Claire; Holmes, Susan; Pennec, Xavier
15
2020
Stein’s method: expository lectures and applications. Papers from the workshop on Stein’s method, Stanford, CA, USA, 1998. Zbl 1079.62024
14
2004
Analysis of casino shelf shuffling machines. Zbl 1283.60013
Diaconis, Persi; Fulman, Jason; Holmes, Susan
14
2013
Interval graph limits. Zbl 1274.60028
Diaconis, Persi; Holmes, Susan; Janson, Svante
11
2013
Tracking network dynamics: a survey using graph distances. Zbl 1405.62171
Donnat, Claire; Holmes, Susan
11
2018
Statistical approach to tests involving phylogenies. Zbl 1090.62123
Holmes, Susan
10
2005
Multivariate data analysis: the French way. Zbl 1166.62310
Holmes, Susan
10
2008
Three examples of Monte-Carlo Markov chains: At the interface between statistical computing, computer science, and statistical mechanics. Zbl 0827.60059
Diaconis, Persi; Holmes, Susan
8
1995
Statistics for phylogenetic trees. Zbl 1101.92305
Holmes, Susan
7
2003
Phylogenies: An overview. Zbl 0939.92024
Holmes, Susan P.
5
1999
Bootstrapping phylogenetic trees: theory and methods. Zbl 1331.62244
Holmes, Susan
5
2003
De Finetti priors using Markov chain Monte Carlo computations. Zbl 1331.62061
Bacallado, Sergio; Diaconis, Persi; Holmes, Susan
4
2015
Template shape estimation: correcting an asymptotic bias. Zbl 1403.62128
Miolane, Nina; Holmes, Susan; Pennec, Xavier
4
2017
Arcsine laws for random walks generated from random permutations with applications to genomics. Zbl 1475.60021
Fang, Xiao; Gan, Han L.; Holmes, Susan; Huang, Haiyan; Peköz, Erol; Röllin, Adrian; Tang, Wenpin
3
2021
Connections and extensions: a discussion of the paper by Girolami and Byrne. Zbl 1349.62192
Diaconis, Persi; Seiler, Christof; Holmes, Susan
3
2014
The duality diagram in data analysis: examples of modern applications. Zbl 1234.62006
De La Cruz, Omar; Holmes, Susan
2
2011
Bioinformatics and management science: Some common tools and techniques. Zbl 1165.90665
Abbas, Ali E.; Holmes, Susan P.
2
2004
Statistical proof? The problem of irreproducibility. Zbl 1398.62047
Holmes, Susan
2
2018
Bradley Efron: a conversation with good friends. Zbl 1331.62020
Holmes, Susan; Morris, Carl; Tibshirani, Rob
2
2003
A statistical perspective on the challenges in molecular microbial biology. Zbl 07603058
Jeganathan, Pratheepa; Holmes, Susan P.
2
2021
Metrics on compositions and coincidences among renewal sequences. Zbl 0840.60012
Diaconis, Persi; Holmes, Susan; Janson, Svante; Lalley, Steven P.; Pemantle, Robin
1
1996
Statistical modeling for practical pooled testing during the COVID-19 pandemic. Zbl 07535201
Comess, Saskia; Wang, Hannah; Holmes, Susan; Donnat, Claire
1
2022
Interactive visualization of hierarchically structured data. Zbl 07498932
Sankaran, Kris; Holmes, Susan
1
2018
Random spatial structure of geometric deformations and Bayesian nonparametrics. Zbl 1405.92140
Seiler, Christof; Pennec, Xavier; Holmes, Susan
1
2013
Modeling the heterogeneity in COVID-19’s reproductive number and its impact on predictive scenarios. Zbl 07742673
Donnat, Claire; Holmes, Susan
1
2023
Modeling the heterogeneity in COVID-19’s reproductive number and its impact on predictive scenarios. Zbl 07742673
Donnat, Claire; Holmes, Susan
1
2023
Statistical modeling for practical pooled testing during the COVID-19 pandemic. Zbl 07535201
Comess, Saskia; Wang, Hannah; Holmes, Susan; Donnat, Claire
1
2022
Arcsine laws for random walks generated from random permutations with applications to genomics. Zbl 1475.60021
Fang, Xiao; Gan, Han L.; Holmes, Susan; Huang, Haiyan; Peköz, Erol; Röllin, Adrian; Tang, Wenpin
3
2021
A statistical perspective on the challenges in molecular microbial biology. Zbl 07603058
Jeganathan, Pratheepa; Holmes, Susan P.
2
2021
Geomstats: a Python package for Riemannian geometry in machine learning. Zbl 07307485
Miolane, Nina; Guigui, Nicolas; Le Brigant, Alice; Mathe, Johan; Hou, Benjamin; Thanwerdas, Yann; Heyder, Stefan; Peltre, Olivier; Koep, Niklas; Zaatiti, Hadi; Hajri, Hatem; Cabanes, Yann; Gerald, Thomas; Chauchat, Paul; Shewmake, Christian; Brooks, Daniel; Kainz, Bernhard; Donnat, Claire; Holmes, Susan; Pennec, Xavier
15
2020
Tracking network dynamics: a survey using graph distances. Zbl 1405.62171
Donnat, Claire; Holmes, Susan
11
2018
Statistical proof? The problem of irreproducibility. Zbl 1398.62047
Holmes, Susan
2
2018
Interactive visualization of hierarchically structured data. Zbl 07498932
Sankaran, Kris; Holmes, Susan
1
2018
Template shape estimation: correcting an asymptotic bias. Zbl 1403.62128
Miolane, Nina; Holmes, Susan; Pennec, Xavier
4
2017
Measuring multivariate association and beyond. Zbl 1359.62212
Josse, Julie; Holmes, Susan
15
2016
De Finetti priors using Markov chain Monte Carlo computations. Zbl 1331.62061
Bacallado, Sergio; Diaconis, Persi; Holmes, Susan
4
2015
Connections and extensions: a discussion of the paper by Girolami and Byrne. Zbl 1349.62192
Diaconis, Persi; Seiler, Christof; Holmes, Susan
3
2014
Sampling from a manifold. Zbl 1356.62015
Diaconis, Persi; Holmes, Susan; Shahshahani, Mehrdad
32
2013
Analysis of casino shelf shuffling machines. Zbl 1283.60013
Diaconis, Persi; Fulman, Jason; Holmes, Susan
14
2013
Interval graph limits. Zbl 1274.60028
Diaconis, Persi; Holmes, Susan; Janson, Svante
11
2013
Random spatial structure of geometric deformations and Bayesian nonparametrics. Zbl 1405.92140
Seiler, Christof; Pennec, Xavier; Holmes, Susan
1
2013
The duality diagram in data analysis: examples of modern applications. Zbl 1234.62006
De La Cruz, Omar; Holmes, Susan
2
2011
Threshold graph limits and random threshold graphs. Zbl 1184.68356
Diaconis, Persi; Holmes, Susan; Janson, Svante
27
2008
Horseshoes in multidimensional scaling and local kernel methods. Zbl 1149.62316
Diaconis, Persi; Goel, Sharad; Holmes, Susan
15
2008
Multivariate data analysis: the French way. Zbl 1166.62310
Holmes, Susan
10
2008
Dynamical bias in the coin toss. Zbl 1513.62009
Diaconis, Persi; Holmes, Susan; Montgomery, Richard
19
2007
Sequential Monte Carlo methods for statistical analysis of tables. Zbl 1117.62310
Chen, Yuguo; Diaconis, Persi; Holmes, Susan P.; Liu, Jun S.
75
2005
Error distribution for gene expression data. Zbl 1083.62114
Purdom, Elizabeth; Holmes, Susan P.
35
2005
Statistical approach to tests involving phylogenies. Zbl 1090.62123
Holmes, Susan
10
2005
Stein’s method: expository lectures and applications. Papers from the workshop on Stein’s method, Stanford, CA, USA, 1998. Zbl 1079.62024
14
2004
Bioinformatics and management science: Some common tools and techniques. Zbl 1165.90665
Abbas, Ali E.; Holmes, Susan P.
2
2004
Statistics for phylogenetic trees. Zbl 1101.92305
Holmes, Susan
7
2003
Bootstrapping phylogenetic trees: theory and methods. Zbl 1331.62244
Holmes, Susan
5
2003
Bradley Efron: a conversation with good friends. Zbl 1331.62020
Holmes, Susan; Morris, Carl; Tibshirani, Rob
2
2003
Random walks on trees and matchings. Zbl 1007.60071
Diaconis, Persi; Holmes, Susan
23
2002
A Bayesian peek into Feller volume. I. Zbl 1192.60003
Diaconis, Persi; Holmes, Susan
17
2002
Geometry of the space of phylogenetic trees. Zbl 0995.92035
Billera, Louis J.; Holmes, Susan P.; Vogtmann, Karen
172
2001
Statistical problems involving permutations with restricted positions. Zbl 1373.62176
Diaconis, Persi; Graham, Ronald; Holmes, Susan P.
27
2001
Analysis of a nonreversible Markov chain sampler. Zbl 1083.60516
Diaconis, Persi; Holmes, Susan; Neal, Radford M.
80
2000
Phylogenies: An overview. Zbl 0939.92024
Holmes, Susan P.
5
1999
Matchings and phylogenetic trees. Zbl 0908.92023
Diaconis, Persi W.; Holmes, Susan P.
21
1998
Bootstrap confidence levels for phylogenetic trees. (Corrected version). Zbl 0871.62092
Efron, Bradley; Halloran, Elizabeth; Holmes, Susan
25
1996
Metrics on compositions and coincidences among renewal sequences. Zbl 0840.60012
Diaconis, Persi; Holmes, Susan; Janson, Svante; Lalley, Steven P.; Pemantle, Robin
1
1996
Three examples of Monte-Carlo Markov chains: At the interface between statistical computing, computer science, and statistical mechanics. Zbl 0827.60059
Diaconis, Persi; Holmes, Susan
8
1995
all top 5

Cited by 1,199 Authors

23 Diaconis, Persi Warren
11 Huckemann, Stephan F.
10 Pennec, Xavier
9 Holmes, Susan P.
9 Owen, Megan
9 Roberts, Gareth O.
9 Yoshida, Ruriko
8 Marron, James Stephen
7 Fulman, Jason E.
7 Moulton, Vincent L.
7 Nye, Tom M. W.
6 Bierkens, Joris
6 Janson, Svante
6 Matsen, Frederick A. IV
6 Mira, Antonietta
6 Patrangenaru, Victor
6 Shimodaira, Hidetoshi
6 Zhou, Wen-Xin
5 Chatterjee, Sourav
5 Devadoss, Satyan Linus
5 Guigui, Nicolas
5 Huber, Katharina T.
5 Markwig, Hannah
4 Arslan, Olcay
4 Barvinok, Alexander I.
4 Bhattacharya, Bhaswar B.
4 Chen, Ting-Li
4 Chen, Yuguo
4 Dinwoodie, Ian Hepburn
4 Dyer, Martin E.
4 Fearnhead, Paul
4 Gavryushkin, Alex
4 Gerencsér, Balázs
4 He, Jimmy
4 Král’, Daniel
4 Miller, Ezra
4 Mukherjee, Sumit
4 Nie, Chun-Xiao
4 Palacios, Julia A.
4 Vaisman, Radislav
4 Willis, Amy D.
3 Aldous, David John
3 Ardila, Federico
3 Bullitt, Elizabeth
3 Catanzaro, Daniele
3 Cavalieri, Renzo
3 Chen, Louis Hsiao-Yun
3 Chepoi, Victor D.
3 Choi, Michael C. H.
3 Doumas, Aristides V.
3 Erdős, Péter L.
3 Fraiman, Ricardo
3 Garba, Maryam K.
3 Girolami, Mark A.
3 Hirai, Hiroshi
3 Hoff, Peter D.
3 Huang, Lu-Jing
3 Jose, Kanichukattu Korakutty
3 Kayibi, Koko Kalambay
3 Kroese, Dirk P.
3 Lin, Bo
3 Lin, Lizhen
3 Lueg, Jonas
3 Miklós, István
3 Miolane, Nina
3 Monmarché, Pierre
3 Müller, Haiko
3 Ottobre, Michela
3 Ottolini, Andrea
3 Pang, C. Y. Amy
3 Papanicolaou, Vassilis G.
3 Pesenti, Raffaele
3 Pillai, Natesh S.
3 Pirzada, Shariefuddin
3 Ram, Arun
3 Saberi, Amin
3 Simper, Mackenzie
3 Skwerer, Sean
3 Spiliopoulos, Konstantinos V.
3 St. John, Katherine
3 Steel, Michael Anthony
3 Suchard, Marc A.
3 Sun, Qiang
3 Thanwerdas, Yann
3 Wang, Haonan
3 Winter, Anita
3 Wu, Taoyang
2 Archer, Kassie
2 Aydın, Burcu
2 Bačák, Miroslav
2 Barp, Alessandro
2 Bayati, Mohsen Fathollah
2 Beh, Eric J.
2 Bernstein, Daniel Irving
2 Bhattacharya, Rabi N.
2 Billey, Sara C.
2 Blanchet, Jose H.
2 Blythe, Richard A.
2 Botev, Zdravko I.
2 Bou-Rabee, Nawaf M.
...and 1,099 more Authors
all top 5

Cited in 213 Serials

22 Advances in Applied Mathematics
21 The Annals of Statistics
19 The Annals of Applied Probability
18 Statistics and Computing
17 The Annals of Applied Statistics
15 Journal of Statistical Planning and Inference
14 Statistical Science
13 Journal of the American Statistical Association
11 Computational Statistics and Data Analysis
10 Statistics & Probability Letters
10 Journal of Computational and Graphical Statistics
9 Journal of Applied Probability
9 Journal of Multivariate Analysis
9 Journal of Applied Statistics
8 Journal of Mathematical Biology
8 Journal of Statistical Physics
8 Annals of the Institute of Statistical Mathematics
8 European Journal of Combinatorics
8 Stochastic Processes and their Applications
8 Electronic Journal of Statistics
7 The Annals of Probability
7 Probability Theory and Related Fields
7 Journal of Theoretical Probability
7 SIAM Journal on Discrete Mathematics
7 Random Structures & Algorithms
7 Linear Algebra and its Applications
7 The Electronic Journal of Combinatorics
7 Bernoulli
6 Computational Statistics
6 Methodology and Computing in Applied Probability
5 Discrete Applied Mathematics
5 Discrete Mathematics
5 Advances in Mathematics
5 Biometrics
5 Journal of Combinatorial Theory. Series A
5 Communications in Statistics. Theory and Methods
5 Journal of Algebraic Combinatorics
5 Journal of Theoretical Biology
5 SIAM Journal on Applied Algebra and Geometry
4 Bulletin of Mathematical Biology
4 Geometriae Dedicata
4 Transactions of the American Mathematical Society
4 Algorithmica
4 Journal of Mathematical Imaging and Vision
4 Combinatorics, Probability and Computing
4 Statistica Sinica
4 Foundations of Computational Mathematics
3 Scandinavian Journal of Statistics
3 Journal of Algebra
3 Journal of Combinatorial Theory. Series B
3 Proceedings of the American Mathematical Society
3 Discrete & Computational Geometry
3 European Journal of Operational Research
3 Journal of Statistical Computation and Simulation
3 Proceedings of the National Academy of Sciences of the United States of America
3 The Australasian Journal of Combinatorics
3 International Journal of Bifurcation and Chaos in Applied Sciences and Engineering
3 Test
3 Séminaire Lotharingien de Combinatoire
3 European Series in Applied and Industrial Mathematics (ESAIM): Probability and Statistics
3 Annals of Combinatorics
3 Journal of the European Mathematical Society (JEMS)
3 Foundations of Physics
3 Journal of Physics A: Mathematical and Theoretical
3 Algebraic Combinatorics
3 SIAM Journal on Mathematics of Data Science
2 The Canadian Journal of Statistics
2 Computer Physics Communications
2 Information Processing Letters
2 Journal of Mathematical Analysis and Applications
2 Psychometrika
2 Chaos, Solitons and Fractals
2 Applied Mathematics and Computation
2 Information Sciences
2 Journal of Optimization Theory and Applications
2 Memoirs of the American Mathematical Society
2 SIAM Journal on Control and Optimization
2 Theoretical Computer Science
2 Theoretical Population Biology
2 Combinatorica
2 SIAM Journal on Matrix Analysis and Applications
2 Computational Geometry
2 SIAM Review
2 Annales de l’Institut Henri Poincaré. Probabilités et Statistiques
2 SIAM Journal on Optimization
2 Annales de la Faculté des Sciences de Toulouse. Mathématiques. Série VI
2 Applied and Computational Harmonic Analysis
2 Electronic Journal of Probability
2 The Ramanujan Journal
2 Australian & New Zealand Journal of Statistics
2 Journal of the Royal Statistical Society. Series B. Statistical Methodology
2 Erkenntnis
2 Journal of Statistical Mechanics: Theory and Experiment
2 Oberwolfach Reports
2 Journal of the Korean Statistical Society
2 Algorithms
2 Forum of Mathematics, Sigma
2 Bayesian Analysis
2 Open Mathematics
2 Journal of Applied and Computational Topology
...and 113 more Serials
all top 5

Cited in 48 Fields

275 Statistics (62-XX)
201 Probability theory and stochastic processes (60-XX)
192 Combinatorics (05-XX)
101 Biology and other natural sciences (92-XX)
93 Numerical analysis (65-XX)
63 Computer science (68-XX)
32 Operations research, mathematical programming (90-XX)
30 Differential geometry (53-XX)
29 Algebraic geometry (14-XX)
28 Convex and discrete geometry (52-XX)
27 Statistical mechanics, structure of matter (82-XX)
21 Linear and multilinear algebra; matrix theory (15-XX)
13 Order, lattices, ordered algebraic structures (06-XX)
13 Commutative algebra (13-XX)
12 Dynamical systems and ergodic theory (37-XX)
12 Algebraic topology (55-XX)
12 Manifolds and cell complexes (57-XX)
11 Group theory and generalizations (20-XX)
11 Game theory, economics, finance, and other social and behavioral sciences (91-XX)
9 General and overarching topics; collections (00-XX)
9 Quantum theory (81-XX)
9 Information and communication theory, circuits (94-XX)
8 Calculus of variations and optimal control; optimization (49-XX)
8 General topology (54-XX)
8 Global analysis, analysis on manifolds (58-XX)
7 Mathematical logic and foundations (03-XX)
7 Number theory (11-XX)
6 Associative rings and algebras (16-XX)
6 Measure and integration (28-XX)
6 Operator theory (47-XX)
5 Geometry (51-XX)
5 Mechanics of particles and systems (70-XX)
4 History and biography (01-XX)
4 Ordinary differential equations (34-XX)
4 Partial differential equations (35-XX)
3 Category theory; homological algebra (18-XX)
3 Systems theory; control (93-XX)
2 Topological groups, Lie groups (22-XX)
2 Functions of a complex variable (30-XX)
2 Special functions (33-XX)
2 Integral transforms, operational calculus (44-XX)
2 Integral equations (45-XX)
1 Several complex variables and analytic spaces (32-XX)
1 Harmonic analysis on Euclidean spaces (42-XX)
1 Abstract harmonic analysis (43-XX)
1 Functional analysis (46-XX)
1 Fluid mechanics (76-XX)
1 Relativity and gravitational theory (83-XX)

Citations by Year

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