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Shiu, Anne

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Author ID: shiu.anne Recent zbMATH articles by "Shiu, Anne"
Published as: Shiu, Anne; Shiu, A.
Documents Indexed: 33 Publications since 2007

Publications by Year

Citations contained in zbMATH Open

29 Publications have been cited 420 times in 200 Documents Cited by Year
Toric dynamical systems. Zbl 1188.37082
Craciun, Gheorghe; Dickenstein, Alicia; Shiu, Anne; Sturmfels, Bernd
68
2009
Chemical reaction systems with toric steady states. Zbl 1251.92016
Millán, Mercedes Pérez; Dickenstein, Alicia; Shiu, Anne; Conradi, Carsten
42
2012
Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry. Zbl 1382.92272
Müller, Stefan; Feliu, Elisenda; Regensburger, Georg; Conradi, Carsten; Shiu, Anne; Dickenstein, Alicia
36
2016
A geometric approach to the global attractor conjecture. Zbl 1301.34063
Gopalkrishnan, Manoj; Miller, Ezra; Shiu, Anne
33
2014
What makes a neural code convex? Zbl 1362.92012
Curto, Carina; Gross, Elizabeth; Jeffries, Jack; Morrison, Katherine; Omar, Mohamed; Rosen, Zvi; Shiu, Anne; Youngs, Nora
21
2017
Atoms of multistationarity in chemical reaction networks. Zbl 1352.92186
Joshi, Badal; Shiu, Anne
21
2013
A survey of methods for deciding whether a reaction network is multistationary. Zbl 1371.92148
Joshi, B.; Shiu, A.
20
2015
The dynamics of weakly reversible population processes near facets. Zbl 1211.37021
Anderson, David F.; Shiu, Anne
20
2010
A global convergence result for processive multisite phosphorylation systems. Zbl 1334.92169
Conradi, Carsten; Shiu, Anne
18
2015
Siphons in chemical reaction networks. Zbl 1198.92020
Shiu, Anne; Sturmfels, Bernd
18
2010
Obstructions to convexity in neural codes. Zbl 1353.05132
Lienkaemper, Caitlin; Shiu, Anne; Woodstock, Zev
17
2017
Convex rank tests and semigraphoids. Zbl 1198.62038
Morton, Jason; Pachter, Lior; Shiu, Anne; Sturmfels, Bernd; Wienand, Oliver
17
2009
Which small reaction networks are multistationary? Zbl 1373.37059
Joshi, Badal; Shiu, Anne
10
2017
Simplifying the Jacobian criterion for precluding multistationarity in chemical reaction networks. Zbl 1253.65070
Joshi, Badal; Shiu, Anne
10
2012
Gröbner bases of neural ideals. Zbl 1395.92013
Garcia, Rebecca; Puente, Luis David García; Kruse, Ryan; Liu, Jessica; Miyata, Dane; Petersen, Ethan; Phillipson, Kaitlyn; Shiu, Anne
8
2018
Three counter-examples on semi-graphoids. Zbl 1211.62197
Hemmecke, Raymond; Morton, Jason; Shiu, Anne; Sturmfels, Bernd; Wienand, Oliver
7
2008
Multistationarity in structured reaction networks. Zbl 1415.92083
Dickenstein, Alicia; Millán, Mercedes Pérez; Shiu, Anne; Tang, Xiaoxian
7
2019
An all-encompassing global convergence result for processive multisite phosphorylation systems. Zbl 1379.92013
Eithun, Mitchell; Shiu, Anne
6
2017
Neural codes, decidability, and a new local obstruction to convexity. Zbl 1418.92023
Chen, Aaron; Frick, Florian; Shiu, Anne
6
2019
Emergence of oscillations in a mixed-mechanism phosphorylation system. Zbl 1415.92092
Conradi, Carsten; Mincheva, Maya; Shiu, Anne
6
2019
Algebraic signatures of convex and non-convex codes. Zbl 1415.92044
Curto, Carina; Gross, Elizabeth; Jeffries, Jack; Morrison, Katherine; Rosen, Zvi; Shiu, Anne; Youngs, Nora
6
2019
Joining and decomposing reaction networks. Zbl 1439.13080
Gross, Elizabeth; Harrington, Heather; Meshkat, Nicolette; Shiu, Anne
4
2020
The smallest multistationary mass-preserving chemical reaction network. Zbl 1171.92322
Shiu, Anne
4
2008
Analyzing multistationarity in chemical reaction networks using the determinant optimization method. Zbl 1410.92179
Félix, Bryan; Shiu, Anne; Woodstock, Zev
4
2016
A projection argument for differential inclusions, with applications to persistence of mass-action kinetics. Zbl 1279.34031
Gopalkrishnan, Manoj; Miller, Ezra; Shiu, Anne
4
2013
Oscillations and bistability in a model of ERK regulation. Zbl 1425.92097
Obatake, Nida; Shiu, Anne; Tang, Xiaoxian; Torres, Angélica
3
2019
The cyclohedron test for finding periodic genes in time course expression studies. Zbl 1166.62357
Morton, Jason; Pachter, Lior; Shiu, Anne; Sturmfels, Bernd
2
2007
Nondegenerate multistationarity in small reaction networks. Zbl 1415.92088
Shiu, Anne; de Wolff, Timo
1
2019
Linear compartmental models: input-output equations and operations that preserve identifiability. Zbl 1419.93012
Gross, Elizabeth; Harrington, Heather; Meshkat, Nicolette; Shiu, Anne
1
2019
Joining and decomposing reaction networks. Zbl 1439.13080
Gross, Elizabeth; Harrington, Heather; Meshkat, Nicolette; Shiu, Anne
4
2020
Multistationarity in structured reaction networks. Zbl 1415.92083
Dickenstein, Alicia; Millán, Mercedes Pérez; Shiu, Anne; Tang, Xiaoxian
7
2019
Neural codes, decidability, and a new local obstruction to convexity. Zbl 1418.92023
Chen, Aaron; Frick, Florian; Shiu, Anne
6
2019
Emergence of oscillations in a mixed-mechanism phosphorylation system. Zbl 1415.92092
Conradi, Carsten; Mincheva, Maya; Shiu, Anne
6
2019
Algebraic signatures of convex and non-convex codes. Zbl 1415.92044
Curto, Carina; Gross, Elizabeth; Jeffries, Jack; Morrison, Katherine; Rosen, Zvi; Shiu, Anne; Youngs, Nora
6
2019
Oscillations and bistability in a model of ERK regulation. Zbl 1425.92097
Obatake, Nida; Shiu, Anne; Tang, Xiaoxian; Torres, Angélica
3
2019
Nondegenerate multistationarity in small reaction networks. Zbl 1415.92088
Shiu, Anne; de Wolff, Timo
1
2019
Linear compartmental models: input-output equations and operations that preserve identifiability. Zbl 1419.93012
Gross, Elizabeth; Harrington, Heather; Meshkat, Nicolette; Shiu, Anne
1
2019
Gröbner bases of neural ideals. Zbl 1395.92013
Garcia, Rebecca; Puente, Luis David García; Kruse, Ryan; Liu, Jessica; Miyata, Dane; Petersen, Ethan; Phillipson, Kaitlyn; Shiu, Anne
8
2018
What makes a neural code convex? Zbl 1362.92012
Curto, Carina; Gross, Elizabeth; Jeffries, Jack; Morrison, Katherine; Omar, Mohamed; Rosen, Zvi; Shiu, Anne; Youngs, Nora
21
2017
Obstructions to convexity in neural codes. Zbl 1353.05132
Lienkaemper, Caitlin; Shiu, Anne; Woodstock, Zev
17
2017
Which small reaction networks are multistationary? Zbl 1373.37059
Joshi, Badal; Shiu, Anne
10
2017
An all-encompassing global convergence result for processive multisite phosphorylation systems. Zbl 1379.92013
Eithun, Mitchell; Shiu, Anne
6
2017
Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry. Zbl 1382.92272
Müller, Stefan; Feliu, Elisenda; Regensburger, Georg; Conradi, Carsten; Shiu, Anne; Dickenstein, Alicia
36
2016
Analyzing multistationarity in chemical reaction networks using the determinant optimization method. Zbl 1410.92179
Félix, Bryan; Shiu, Anne; Woodstock, Zev
4
2016
A survey of methods for deciding whether a reaction network is multistationary. Zbl 1371.92148
Joshi, B.; Shiu, A.
20
2015
A global convergence result for processive multisite phosphorylation systems. Zbl 1334.92169
Conradi, Carsten; Shiu, Anne
18
2015
A geometric approach to the global attractor conjecture. Zbl 1301.34063
Gopalkrishnan, Manoj; Miller, Ezra; Shiu, Anne
33
2014
Atoms of multistationarity in chemical reaction networks. Zbl 1352.92186
Joshi, Badal; Shiu, Anne
21
2013
A projection argument for differential inclusions, with applications to persistence of mass-action kinetics. Zbl 1279.34031
Gopalkrishnan, Manoj; Miller, Ezra; Shiu, Anne
4
2013
Chemical reaction systems with toric steady states. Zbl 1251.92016
Millán, Mercedes Pérez; Dickenstein, Alicia; Shiu, Anne; Conradi, Carsten
42
2012
Simplifying the Jacobian criterion for precluding multistationarity in chemical reaction networks. Zbl 1253.65070
Joshi, Badal; Shiu, Anne
10
2012
The dynamics of weakly reversible population processes near facets. Zbl 1211.37021
Anderson, David F.; Shiu, Anne
20
2010
Siphons in chemical reaction networks. Zbl 1198.92020
Shiu, Anne; Sturmfels, Bernd
18
2010
Toric dynamical systems. Zbl 1188.37082
Craciun, Gheorghe; Dickenstein, Alicia; Shiu, Anne; Sturmfels, Bernd
68
2009
Convex rank tests and semigraphoids. Zbl 1198.62038
Morton, Jason; Pachter, Lior; Shiu, Anne; Sturmfels, Bernd; Wienand, Oliver
17
2009
Three counter-examples on semi-graphoids. Zbl 1211.62197
Hemmecke, Raymond; Morton, Jason; Shiu, Anne; Sturmfels, Bernd; Wienand, Oliver
7
2008
The smallest multistationary mass-preserving chemical reaction network. Zbl 1171.92322
Shiu, Anne
4
2008
The cyclohedron test for finding periodic genes in time course expression studies. Zbl 1166.62357
Morton, Jason; Pachter, Lior; Shiu, Anne; Sturmfels, Bernd
2
2007
all top 5

Cited by 264 Authors

19 Shiu, Anne
14 Craciun, Gheorghe
14 Feliu, Elisenda
11 Johnston, Matthew D.
10 Dickenstein, Alicia M.
9 Anderson, David Frederick
9 Conradi, Carsten
9 Wiuf, Carsten
8 Youngs, Nora
7 Pantea, Casian Alexandru
6 Cappelletti, Daniele
6 Millán, Mercedes Pérez
5 Boros, Balázs
5 Curto, Carina Pamela
5 Grigor’ev, Dmitriĭ Yur’evich
5 Gross, Elizabeth
5 Joshi, Badal
5 Kahle, Thomas
5 Müller, Stefan
5 Rosen, Zvi
5 Tang, Bao Quoc
4 Banaji, Murad
4 Fellner, Klemens
4 Gopalkrishnan, Manoj
4 Jeffs, R. Amzi
4 Mendoza, Eduardo R.
4 Sturmfels, Bernd
4 Tang, Xiaoxian
4 Weber, Andreas Günter
3 Adamer, Michael F.
3 Ardila Mantilla, Federico
3 Bihan, Frédéric
3 Deshpande, Abhishek
3 Dimitrova, Elena S.
3 Fang, Zhou
3 Forcey, Stefan
3 Gao, Chuanhou
3 Giaroli, Magalí
3 Gnacadja, Gilles Ph.
3 Gunawardena, Jeremy
3 Harrington, Heather A.
3 Helmer, Martin
3 Itskov, Vladimir
3 Jeffries, Jack
3 Jose, Editha C.
3 Kim, Jinsu
3 Obatake, Nida
3 Phillipson, Kaitlyn
3 Radulescu, Ovidiu
3 Rao, Shodhan
3 Regensburger, Georg
3 Siegel, David
3 Szederkényi, Gábor
3 Yu, Polly Y.
2 Agazzi, Andrea
2 Arceo, Carlene Perpetua P.
2 Brunner, James D.
2 De Freitas, Michael Marcondes
2 Dembo, Amir
2 Eckmann, Jean-Pierre
2 Errami, Hassan
2 Flockerzi, Dietrich
2 He, Qijun
2 Hernandez, Bryan S.
2 Hofbauer, Josef
2 Holstein, Katharina
2 Iosif, Alexandru
2 Jin, Jiaxin
2 Komatsu, Hirokazu
2 Matusevich, Laura Felicia
2 Mincheva, Maya
2 Morrison, Katherine
2 Nakajima, Hiroyuki
2 Sadeghimanesh, AmirHosein
2 Sáez, Meritxell
2 Sottile, Frank
2 Stigler, Brandilyn
2 Torres, Angélica
2 Tudorascu, Adrian
2 Uhler, Caroline
2 van der Schaft, Arjan J.
2 Woodstock, Zev
1 Ács, Bernadett
1 Agnarsson, Geir
1 Allman, Elizabeth S.
1 Banks, Jacqueline
1 Barabanschikov, Alexander
1 Bates, Daniel J.
1 Billera, Louis J.
1 Blanchini, Franco
1 Boege, Tobias
1 Boldyrev, Stanislav
1 Boocher, Adam
1 Bradford, Russell J.
1 Bressloff, Paul C.
1 Brijder, Robert
1 Burton, Evan
1 Cai, Shoufeng
1 Castillo, Federico
1 Chen, Aaron
...and 164 more Authors
all top 5

Cited in 67 Serials

32 Bulletin of Mathematical Biology
17 Journal of Mathematical Chemistry
14 Journal of Mathematical Biology
11 Mathematical Biosciences
11 Advances in Applied Mathematics
9 SIAM Journal on Applied Mathematics
8 SIAM Journal on Applied Dynamical Systems
5 Journal of Symbolic Computation
5 SIAM Journal on Applied Algebra and Geometry
4 Applied Mathematics and Computation
4 Journal of Algebraic Combinatorics
4 Discrete and Continuous Dynamical Systems. Series B
3 Advances in Mathematics
3 Discrete & Computational Geometry
3 Journal of Algebra and its Applications
3 Journal of Theoretical Biology
2 Automatica
2 Journal of Pure and Applied Algebra
2 Proceedings of the American Mathematical Society
2 European Journal of Combinatorics
2 Algorithmica
2 The Annals of Applied Probability
2 Linear Algebra and its Applications
2 SIAM Journal on Mathematical Analysis
1 American Mathematical Monthly
1 Archive for Rational Mechanics and Analysis
1 Computers & Mathematics with Applications
1 Computer Physics Communications
1 Communications on Pure and Applied Mathematics
1 Discrete Mathematics
1 Information Processing Letters
1 Journal of Computational Physics
1 Journal of Statistical Physics
1 ZAMP. Zeitschrift für angewandte Mathematik und Physik
1 Chaos, Solitons and Fractals
1 Annals of the Institute of Statistical Mathematics
1 Journal of Algebra
1 Journal of Applied Probability
1 Journal of Combinatorial Theory. Series A
1 Journal of Differential Equations
1 Journal of the London Mathematical Society. Second Series
1 Kybernetika
1 Nonlinear Analysis. Theory, Methods & Applications. Series A: Theory and Methods
1 Systems & Control Letters
1 International Journal of Approximate Reasoning
1 SIAM Journal on Discrete Mathematics
1 International Journal of Algebra and Computation
1 Numerical Algorithms
1 Stochastic Processes and their Applications
1 Bulletin of the American Mathematical Society. New Series
1 Mathematical Programming. Series A. Series B
1 Journal of Nonlinear Science
1 Vestnik St. Petersburg University. Mathematics
1 Turkish Journal of Mathematics
1 Bernoulli
1 Annals of Combinatorics
1 Chaos
1 Journal of High Energy Physics
1 Dynamical Systems
1 Foundations of Computational Mathematics
1 Journal of Discrete Algorithms
1 Mathematics in Computer Science
1 Frontiers of Mathematics in China
1 Journal of Physics A: Mathematical and Theoretical
1 Mathematical Modelling of Natural Phenomena
1 Kinetic and Related Models
1 Involve

Citations by Year