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## Song, Yun S.

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 Author ID: song.yun-s Published as: Song, Yun S.; Song, Jun S. Homepage: https://statistics.berkeley.edu/people/yun-song
 Documents Indexed: 29 Publications since 2000
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#### Co-Authors

 4 single-authored 5 Jenkins, Paul A. 4 Bhaskar, Anand 3 Slatkin, Montgomery 3 Song, Jun S. 3 Steinrücken, Matthias 2 Fischer, Jonathan 2 Li, Jun 2 Malaspinas, Anna-Sapfo 2 Wang, Miaoyan 1 Ding, Zhihong 1 Duc, Khanh Dao 1 Durbin, Richard 1 Fearnhead, Paul 1 Griffiths, Robert C. 1 Gusfield, Dan 1 Hein, Jotun J. 1 Kamm, Jack 1 Kamm, John A. 1 Langley, Charles H. 1 Monni, Stefano 1 Paul, Joshua S. 1 Silverstein, Eva 1 Terhorst, Jonathan 1 Wang, Ying Xiang Rachel 1 Wu, Yufeng
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#### Serials

 7 Theoretical Population Biology 3 Advances in Applied Probability 2 The Annals of Applied Probability 2 Advances in Theoretical and Mathematical Physics 2 Annals of Combinatorics 2 The Annals of Applied Statistics 1 Journal of Mathematical Biology 1 Journal of Mathematical Physics 1 Bulletin of Mathematical Biology 1 Journal of Geometry and Physics 1 The Annals of Statistics 1 Journal of the American Statistical Association 1 Linear Algebra and its Applications 1 Electronic Journal of Probability 1 Journal of High Energy Physics
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#### Fields

 22 Biology and other natural sciences (92-XX) 8 Probability theory and stochastic processes (60-XX) 8 Statistics (62-XX) 6 Combinatorics (05-XX) 5 Algebraic geometry (14-XX) 5 Numerical analysis (65-XX) 3 Quantum theory (81-XX) 1 Linear and multilinear algebra; matrix theory (15-XX) 1 Functions of a complex variable (30-XX) 1 Approximations and expansions (41-XX) 1 Operator theory (47-XX) 1 Differential geometry (53-XX) 1 Systems theory; control (93-XX)

#### Citations contained in zbMATH Open

25 Publications have been cited 110 times in 87 Documents Cited by Year
An explicit transition density expansion for a multi-allelic Wright-Fisher diffusion with general diploid selection. Zbl 1275.92090
Steinrücken, Matthias; Wang, Y. X. Rachel; Song, Yun S.
2013
Open string instantons and relative stable morphisms. Zbl 1015.14026
Li, Jun; Song, Yun S.
2001
Importance sampling and the two-locus model with subdivided population structure. Zbl 1144.62092
Griffiths, Robert C.; Jenkins, Paul A.; Song, Yun S.
2008
The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele. Zbl 1297.92054
Jenkins, Paul A.; Song, Yun S.
2011
On the combinatorics of rooted binary phylogenetic trees. Zbl 1045.05031
Song, Yun S.
2003
The Hurwitz enumeration problem of branched covers and Hodge integrals. Zbl 1077.14078
Monni, Stefano; Song, Jun S.; Song, Yun S.
2004
A novel spectral method for inferring general diploid selection from time series genetic data. Zbl 1454.62405
Steinrücken, Matthias; Bhaskar, Anand; Song, Yun S.
2014
Descartes’ rule of signs and the identifiability of population demographic models from genomic variation data. Zbl 1305.62027
2014
Operator norm inequalities between tensor unfoldings on the partition lattice. Zbl 1359.15014
Wang, Miaoyan; Duc, Khanh Dao; Fischer, Jonathan; Song, Yun S.
2017
An asymptotic sampling formula for the coalescent with recombination. Zbl 1193.92077
Jenkins, Paul A.; Song, Yun S.
2010
Closed-form asymptotic sampling distributions under the coalescent with recombination for an arbitrary number of loci. Zbl 1241.92054
2012
On the minimum number of recombination events in the evolutionary history of DNA sequences. Zbl 1063.92041
Song, Yun S.; Hein, Jotun
2004
A graphical approach to multi-locus match probability computation: Revisiting the product rule. Zbl 1123.92021
Song, Yun S.; Slatkin, Montgomery
2007
Analytic computation of the expectation of the linkage disequilibrium coefficient $$r^2$$. Zbl 1118.92038
Song, Yun S.; Song, Jun S.
2007
Properties of subtree-prune-and-regraft operations on totally-ordered phylogenetic trees. Zbl 1092.05015
Song, Yun S.
2006
Padé approximants and exact two-locus sampling distributions. Zbl 1242.65017
Jenkins, Paul A.; Song, Yun S.
2012
A sequentially Markov conditional sampling distribution for structured populations with migration and recombination. Zbl 1296.92170
Steinrücken, Matthias; Paul, Joshua S.; Song, Yun S.
2013
Approximate sampling formulae for general finite-alleles models of mutation. Zbl 1241.92053
Bhaskar, Anand; Kamm, John A.; Song, Yun S.
2012
Three-dimensional Gorenstein singularities and $$\widehat{\text{SU}(3)}$$ modular invariants. Zbl 1011.81036
Song, Jun S.
2000
On a conjecture of Givental. Zbl 1064.14065
Song, Jun S.; Song, Yun S.
2004
Algorithms to distinguish the role of gene-conversion from single-crossover recombination in the derivation of SNP sequences in populations. Zbl 1225.92016
Song, Yun S.; Ding, Zhihong; Gusfield, Dan; Langley, Charles H.; Wu, Yufeng
2006
A sufficient condition for reducing recursions in hidden Markov models. Zbl 1334.60151
Song, Yun S.
2006
Open string instantons and relative stable morphisms. Zbl 1107.14303
Li, Jun; Song, Yun S.
2006
Tractable diffusion and coalescent processes for weakly correlated loci. Zbl 1332.92041
Jenkins, Paul A.; Fearnhead, Paul; Song, Yun S.
2015
Three-way clustering of multi-tissue multi-individual gene expression data using semi-nonnegative tensor decomposition. Zbl 1423.62152
Wang, Miaoyan; Fischer, Jonathan; Song, Yun S.
2019
Three-way clustering of multi-tissue multi-individual gene expression data using semi-nonnegative tensor decomposition. Zbl 1423.62152
Wang, Miaoyan; Fischer, Jonathan; Song, Yun S.
2019
Operator norm inequalities between tensor unfoldings on the partition lattice. Zbl 1359.15014
Wang, Miaoyan; Duc, Khanh Dao; Fischer, Jonathan; Song, Yun S.
2017
Tractable diffusion and coalescent processes for weakly correlated loci. Zbl 1332.92041
Jenkins, Paul A.; Fearnhead, Paul; Song, Yun S.
2015
A novel spectral method for inferring general diploid selection from time series genetic data. Zbl 1454.62405
Steinrücken, Matthias; Bhaskar, Anand; Song, Yun S.
2014
Descartes’ rule of signs and the identifiability of population demographic models from genomic variation data. Zbl 1305.62027
2014
An explicit transition density expansion for a multi-allelic Wright-Fisher diffusion with general diploid selection. Zbl 1275.92090
Steinrücken, Matthias; Wang, Y. X. Rachel; Song, Yun S.
2013
A sequentially Markov conditional sampling distribution for structured populations with migration and recombination. Zbl 1296.92170
Steinrücken, Matthias; Paul, Joshua S.; Song, Yun S.
2013
Closed-form asymptotic sampling distributions under the coalescent with recombination for an arbitrary number of loci. Zbl 1241.92054
2012
Padé approximants and exact two-locus sampling distributions. Zbl 1242.65017
Jenkins, Paul A.; Song, Yun S.
2012
Approximate sampling formulae for general finite-alleles models of mutation. Zbl 1241.92053
Bhaskar, Anand; Kamm, John A.; Song, Yun S.
2012
The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele. Zbl 1297.92054
Jenkins, Paul A.; Song, Yun S.
2011
An asymptotic sampling formula for the coalescent with recombination. Zbl 1193.92077
Jenkins, Paul A.; Song, Yun S.
2010
Importance sampling and the two-locus model with subdivided population structure. Zbl 1144.62092
Griffiths, Robert C.; Jenkins, Paul A.; Song, Yun S.
2008
A graphical approach to multi-locus match probability computation: Revisiting the product rule. Zbl 1123.92021
Song, Yun S.; Slatkin, Montgomery
2007
Analytic computation of the expectation of the linkage disequilibrium coefficient $$r^2$$. Zbl 1118.92038
Song, Yun S.; Song, Jun S.
2007
Properties of subtree-prune-and-regraft operations on totally-ordered phylogenetic trees. Zbl 1092.05015
Song, Yun S.
2006
Algorithms to distinguish the role of gene-conversion from single-crossover recombination in the derivation of SNP sequences in populations. Zbl 1225.92016
Song, Yun S.; Ding, Zhihong; Gusfield, Dan; Langley, Charles H.; Wu, Yufeng
2006
A sufficient condition for reducing recursions in hidden Markov models. Zbl 1334.60151
Song, Yun S.
2006
Open string instantons and relative stable morphisms. Zbl 1107.14303
Li, Jun; Song, Yun S.
2006
The Hurwitz enumeration problem of branched covers and Hodge integrals. Zbl 1077.14078
Monni, Stefano; Song, Jun S.; Song, Yun S.
2004
On the minimum number of recombination events in the evolutionary history of DNA sequences. Zbl 1063.92041
Song, Yun S.; Hein, Jotun
2004
On a conjecture of Givental. Zbl 1064.14065
Song, Jun S.; Song, Yun S.
2004
On the combinatorics of rooted binary phylogenetic trees. Zbl 1045.05031
Song, Yun S.
2003
Open string instantons and relative stable morphisms. Zbl 1015.14026
Li, Jun; Song, Yun S.
2001
Three-dimensional Gorenstein singularities and $$\widehat{\text{SU}(3)}$$ modular invariants. Zbl 1011.81036
Song, Jun S.
2000
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#### Cited by 154 Authors

 9 Song, Yun S. 6 Jenkins, Paul A. 5 Petronio, Carlo 4 Wakeley, John 3 Bakosi, Jozsef 3 Bhaskar, Anand 3 Griffiths, Robert C. 3 Gusfield, Dan 3 Ristorcelli, J. Raymond 2 Baake, Ellen 2 Brini, Andrea 2 Ferretti, Luca 2 Grünewald, Stefan 2 Humphries, Peter J. 2 Jockers, Hans 2 Klassmann, Alexander 2 Klemm, Albrecht 2 Koskela, Jere 2 Li, Zhening 2 Malaspinas, Anna-Sapfo 2 Pascali, Maria Antonietta 2 Ross, Nathan 2 Slatkin, Montgomery 2 Soroush, Masoud 2 Spanò, Dario 2 Steinrücken, Matthias 2 Wang, Miaoyan 2 Zhou, Jian 1 Achaz, Guillaume 1 Aharony, Ofer 1 Alberti, Frederic 1 Alexandrov, Alexander Sergeevich 1 Baharian, Soheil 1 Balding, David Joseph 1 Baroni, Mihaela Carmen 1 Bender, Christian 1 Bergman, Juraj 1 Beskos, Alexandros 1 Boitard, Simon 1 Bouchard-Côté, Alexandre 1 Bryan, Jim 1 Burden, Conrad John 1 Buzbas, Erkan Ozge 1 Carmi, Shai 1 Cavalieri, Renzo 1 Chen, Bilian 1 Chikhi, Lounès 1 De Iorio, Maria 1 De Oliveira Martins, Leonardo 1 Diaconescu, Duiliu-Emanuel 1 Ding, Yang 1 Dunin-Barkovskiĭ, Petr Igorevich 1 Durbin, Richard 1 Eddhu, Satish 1 Epstein, Charles Lawrence 1 Esser, Mareike 1 Evans, Steven Neil 1 Fang, Bohan 1 Favaro, Stefano 1 Feldman, Andrey 1 Feng, Shui 1 Ferguson, Jake M. 1 Fewster, Rachel M. 1 Fischer, Jonathan 1 Florea, Bogdan 1 Futschik, Andreas 1 Gan, Han L. 1 Goodman, Jesse 1 Gory, Jeffrey J. 1 Gravel, Simon 1 Green, Peter J. 1 Grusea, Simona 1 Gu, Jie 1 Guillin, Arnaud 1 Hasić, Damir 1 Herbei, Radu 1 Hickerson, Dean R. 1 Hobolth, Asger 1 Honda, Masazumi 1 Illingworth, Christopher J. R. 1 Jabot, Franck 1 Janssen, Remie 1 Jasra, Ajay 1 Jones, Danielle 1 Kamm, Jack 1 Kamm, John A. 1 Kelk, Steven 1 Kim, Junhyong 1 King, Léandra 1 Kishino, Hirohisa 1 Klawitter, Jonathan 1 Kosiol, Carolin 1 Kubatko, Laura Salter 1 Lambert, Amaury 1 Lessard, Sabin 1 Letter, I. 1 Li, Gen 1 Li, Lexin 1 Liu, Chiu-Chu Melissa 1 Ma, Yi ...and 54 more Authors
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#### Cited in 49 Serials

 18 Theoretical Population Biology 7 Journal of Mathematical Biology 4 Communications in Mathematical Physics 4 The Annals of Applied Statistics 3 Advances in Applied Probability 2 Letters in Mathematical Physics 2 The Annals of Applied Probability 2 Journal of Combinatorial Optimization 2 Journal of Graph Algorithms and Applications 2 Statistical Applications in Genetics and Molecular Biology 2 International Journal of Stochastic Analysis 2 Journal of Theoretical Biology 1 Discrete Applied Mathematics 1 Journal of Mathematical Physics 1 Reviews of Modern Physics 1 Theoretical and Mathematical Physics 1 Bulletin of Mathematical Biology 1 Annals of the Institute of Statistical Mathematics 1 Annali di Matematica Pura ed Applicata. Serie Quarta 1 Calcolo 1 Duke Mathematical Journal 1 Journal of the American Statistical Association 1 Journal of Applied Probability 1 Journal of Combinatorial Theory. Series A 1 Journal of Computer and System Sciences 1 Journal für die Reine und Angewandte Mathematik 1 Proceedings of the American Mathematical Society 1 Theoretical Computer Science 1 Transactions of the American Mathematical Society 1 European Journal of Combinatorics 1 Stochastic Analysis and Applications 1 Algorithmica 1 SIAM Journal on Applied Mathematics 1 Annales de l’Institut Henri Poincaré. Probabilités et Statistiques 1 Computational Statistics and Data Analysis 1 SIAM Journal on Optimization 1 Computational Optimization and Applications 1 Documenta Mathematica 1 Geometry & Topology 1 Annals of Combinatorics 1 Acta Mathematica Sinica. English Series 1 Journal of High Energy Physics 1 Advances in Geometry 1 Algebraic & Geometric Topology 1 Journal of the Australian Mathematical Society 1 Journal of Machine Learning Research (JMLR) 1 International Journal of Biomathematics 1 Statistics and Computing 1 Proceedings of the Royal Society of London. A. Mathematical, Physical and Engineering Sciences
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#### Cited in 23 Fields

 54 Biology and other natural sciences (92-XX) 20 Probability theory and stochastic processes (60-XX) 20 Statistics (62-XX) 16 Combinatorics (05-XX) 11 Algebraic geometry (14-XX) 11 Numerical analysis (65-XX) 8 Differential geometry (53-XX) 8 Manifolds and cell complexes (57-XX) 8 Quantum theory (81-XX) 5 Operations research, mathematical programming (90-XX) 4 Computer science (68-XX) 3 Linear and multilinear algebra; matrix theory (15-XX) 3 Partial differential equations (35-XX) 2 Several complex variables and analytic spaces (32-XX) 2 Dynamical systems and ergodic theory (37-XX) 2 Global analysis, analysis on manifolds (58-XX) 2 Statistical mechanics, structure of matter (82-XX) 2 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 2 Information and communication theory, circuits (94-XX) 1 General and overarching topics; collections (00-XX) 1 Special functions (33-XX) 1 Approximations and expansions (41-XX) 1 Relativity and gravitational theory (83-XX)