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Author ID: stadler.peter-f Recent zbMATH articles by "Stadler, Peter F."
Published as: Stadler, Peter F.; Stadler, Peter; Stadler, P. F.; Stadler, P.
External Links: ORCID · dblp
all top 5

Co-Authors

9 single-authored
31 Hellmuth, Marc
12 Flamm, Christoph
12 Stadler, Bärbel M. R.
11 Schuster, Peter
10 Geiß, Manuela
10 Leydold, Josef
8 Merkle, Daniel
7 Hofacker, Ivo L.
7 Klemm, Konstantin
7 Ostermeier, Lydia
7 Prohaska, Sonja J.
6 Hernandez-Rosales, Maribel
6 Schaller, David
6 Wieseke, Nicolas
5 Andersen, Jakob Lykke
5 Happel, Robert
5 Höner zu Siederdissen, Christian
4 Berkemer, Sarah J.
4 Bíyíkoğlu, Türker
4 Changat, Manoj
4 Gleiss, Petra M.
4 Imrich, Wilfried
4 Long, Yangjing
4 Reidys, Christian Michael
4 Wagner, Günter P.
3 Fontanari, José F.
3 Hordijk, Wim
3 Hossein Nezhad, Ferdoos
3 Jost, Jürgen
3 López Sánchez, Alitzel
3 Narasimha-Shenoi, Prasanth G.
3 Schnabl, Wolfgang
3 Valdivia, Dulce I.
2 Attolini, Camille Stephan-Otto
2 Chávez, Edgar
2 Fagerberg, Rolf
2 Fontana, Walter
2 Forst, Christian V.
2 Fritz, Adrian
2 Gärtner, Fabian
2 González Laffitte, Marcos
2 Hecht, Robert
2 Klöckl, Werner
2 Kovše, Matjaž
2 Krakauer, David C.
2 Mehta, Anita
2 Miller, John Howard
2 Mohandas, Shilpa
2 Mosig, Axel
2 Ostermeier, Philipp-Jens
2 Otto, Wolfgang
2 Ramachandran, Abisha
2 Retzlaff, Nancy
2 Riester, Markus
2 Rockmore, Daniel N.
2 Tinhofer, Gottfried
1 Anders, John
1 Andersen, Tommy
1 Arnold, Christian
1 Backofen, Rolf
1 Bastert, Oliver
1 Bernhart, Stephan H.
1 Bompfünewerer, Athanasius F.
1 Bruckmann, Carmen
1 Chaves, Ricardo R. C.
1 Collins, James P.
1 Davies, Edward Brian
1 de Oliveira, Viviane M.
1 Dress, Andreas W. M.
1 Erwin, Douglas H.
1 Fell, David A.
1 Ferreira, Carlos Eduardo
1 Ferreira, Fernando Fagundes
1 Flack, Jessica C.
1 Fritzsch, Guido
1 Gatter, Thomas
1 Gladwell, Graham M. L.
1 Gu, Jiao
1 Hammack, Richard H.
1 Hanczyc, Martin M.
1 Haslinger, Christian
1 Heine, Christian
1 Hertel, Jana
1 Huber, Katharina T.
1 Hubička, Jan
1 Karasözen, Bülent
1 Kauffman, Stuart Alan
1 Kianian, Rojin
1 Kostelec, Peter J.
1 Laffitte, Marcos E. González
1 Lafond, Manuel
1 Laubichler, Manfred D.
1 Liu, Shiping
1 Love, Alex
1 Luck, Jean-Marc
1 Lynch, Vincent
1 Marc, Tilen
1 Miyano, Satoru
1 Moulton, Vincent L.
1 Munteanu, Andreea
...and 27 more Co-Authors
all top 5

Serials

17 Journal of Mathematical Biology
10 Bulletin of Mathematical Biology
9 Journal of Theoretical Biology
8 Discrete Applied Mathematics
8 Mathematics in Computer Science
5 Mathematical Biosciences
4 Discrete Mathematics
4 Journal of Physics A: Mathematical and General
4 Advances in Complex Systems
4 MATCH - Communications in Mathematical and in Computer Chemistry
4 Ars Mathematica Contemporanea
4 The Art of Discrete and Applied Mathematics
3 Theoretical Computer Science
3 Physica D
3 Linear Algebra and its Applications
3 Journal of Difference Equations and Applications
2 Applied Mathematics and Computation
2 Journal of Graph Theory
2 Theoretical Population Biology
2 The Australasian Journal of Combinatorics
2 The Electronic Journal of Combinatorics
2 Discussiones Mathematicae. Graph Theory
2 Lecture Notes in Computer Science
2 Algorithms
1 Computers and Chemistry
1 Nuclear Physics. B
1 Physics Letters. A
1 Match
1 Networks
1 European Journal of Combinatorics
1 Annales Societatis Mathematicae Polonae. Seria I. Commentationes Mathematicae
1 Graphs and Combinatorics
1 Journal of Economic Dynamics & Control
1 Aequationes Mathematicae
1 SIAM Review
1 Applied and Computational Harmonic Analysis
1 ELA. The Electronic Journal of Linear Algebra
1 Journal of Mathematical Chemistry
1 Journal of Complex Systems
1
1 Entropy
1 AKCE International Journal of Graphs and Combinatorics
1 Lecture Notes in Mathematics
1 The European Physical Journal B. Condensed Matter and Complex Systems
1 Applied General Topology
1 European Series in Applied and Industrial Mathematics (ESAIM): Proceedings and Surveys

Publications by Year

Citations contained in zbMATH Open

99 Publications have been cited 697 times in 431 Documents Cited by Year
Combinatorics of RNA secondary structures. Zbl 0918.05004
Hofacker, Ivo L.; Schuster, Peter; Stadler, Peter F.
39
1998
Laplacian eigenvectors of graphs. Perron-Frobenius and Faber-Krahn type theorems. Zbl 1129.05001
Biyikoğlu, Türker; Leydold, Josef; Stadler, Peter F.
34
2007
Discrete nodal domain theorems. Zbl 0990.05093
Davies, E. Brian; Gladwell, Graham M. L.; Leydold, Josef; Stadler, Peter F.
32
2001
Landscapes and their correlation functions. Zbl 1002.92547
Stadler, Peter F.
31
1996
Combinatorial landscapes. Zbl 0996.92026
Reidys, Christian M.; Stadler, Peter F.
30
2002
Full characterization of a strange attractor. Chaotic dynamics in low- dimensional replicator systems. Zbl 0717.92001
Schnabl, Wolfgang; Stadler, Peter F.; Forst, Christian; Schuster, Peter
29
1991
Orthology relations, symbolic ultrametrics, and cographs. Zbl 1408.05038
Hellmuth, Marc; Hernandez-Rosales, Maribel; Huber, Katharina T.; Moulton, Vincent; Stadler, Peter F.; Wieseke, Nicolas
25
2013
Mutation in autocatalytic reaction networks. An analysis based on perturbation theory. Zbl 0776.92007
Stadler, Peter F.; Schuster, Peter
23
1992
RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties. Zbl 1323.92149
Haslinger, Christian; Stadler, Peter F.
22
1999
The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations. Zbl 1368.05023
Hellmuth, Marc; Stadler, Peter F.; Wieseke, Nicolas
18
2017
The landscape of the traveling salesman problem. Zbl 0979.90509
Stadler, Peter F.; Schnabl, Wolfgang
15
1992
Minimum cycle bases of Halin graphs. Zbl 1022.05041
Stadler, Peter F.
15
2003
Generic properties of combinatory maps: Neutral networks of RNA secondary structures. Zbl 0925.92006
Reidys, Christian; Stadler, Peter F.; Schuster, Peter
15
1997
Minimal cycle bases of outerplanar graphs. Zbl 0895.05032
Leydold, Josef; Stadler, Peter F.
15
1998
Reconstructing gene trees from Fitch’s xenology relation. Zbl 1396.05025
Geiß, Manuela; Anders, John; Stadler, Peter F.; Wieseke, Nicolas; Hellmuth, Marc
14
2018
Random field models for fitness landscapes. Zbl 0982.92024
Stadler, Peter F.; Happel, Robert
12
1999
Molecular replicator dynamics. Zbl 1040.92010
Stadler, Bärbel M. R.; Stadler, Peter F.
11
2003
Dynamics of small autocatalytic reaction networks. I: Bifurcations, permanence and exclusion. Zbl 0707.92009
Stadler, Peter F.; Schuster, Peter
11
1990
Best match graphs. Zbl 1415.92133
Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F.
11
2019
Relevant cycles in chemical reaction networks. Zbl 1028.05108
Gleiss, Petra M.; Stadler, Peter F.; Wagner, Andreas; Fell, David A.
10
2001
Neutrality in fitness landscapes. Zbl 1113.92314
Reidys, Christian M.; Stadler, Peter F.
10
2001
Dynamics of small autocatalytic reaction networks. II: Replication, mutation and catalysis. Zbl 0813.92014
Stadler, Peter F.; Schnabl, Wolfgang; Forst, Christian V.; Schuster, Peter
9
1995
Efficient computation of RNA folding dynamics. Zbl 1050.81729
Wolfinger, Michael T.; Svrcek-Seiler, W. Andreas; Flamm, Christoph; Hofacker, Ivo L.; Stadler, Peter F.
9
2004
Amplitude spectra of fitness landscapes. Zbl 0927.92026
Hordijk, Wim; Stadler, Peter F.
8
1998
A survey on hypergraph products. Zbl 1262.05110
Hellmuth, Marc; Ostermeier, Lydia; Stadler, Peter F.
8
2012
Complementary replication. Zbl 0759.92006
Stadler, Peter F.
7
1991
The probability of permanence. Zbl 0778.92015
Stadler, Peter F.; Happel, Robert
7
1993
Fast Fourier transform for fitness landscapes. Zbl 1004.92028
Rockmore, Dan; Kostelec, Peter; Hordijk, Wim; Stadler, Peter F.
7
2002
Equitable partitions, coherent algebras and random walks: Applications to the correlation structure of landscapes. Zbl 1029.05128
Stadler, P. F.; Tinhofer, G.
7
1999
Reciprocal best match graphs. Zbl 1433.05303
Geiß, Manuela; Stadler, Peter F.; Hellmuth, Marc
7
2020
Local algorithms for the prime factorization of strong product graphs. Zbl 1205.05222
Hellmuth, Marc; Imrich, Wilfried; Klöckl, Werner; Stadler, Peter F.
6
2009
Random catalytic reaction networks. Zbl 0767.92001
Stadler, Peter F.; Fontana, Walter; Miller, John H.
6
1993
Population dependent Fourier decomposition of fitness landscapes over recombination spaces: evolvability of complex characters. Zbl 1323.92135
Stadler, Peter F.; Seitz, Rudi; Wagner, Günter P.
6
2000
The Cartesian product of hypergraphs. Zbl 1242.05193
Ostermeier, Lydia; Hellmuth, Marc; Stadler, Peter F.
6
2012
Landscapes on spaces of trees. Zbl 1016.92024
Bastert, Oliver; Rockmore, Dan; Stadler, Peter F.; Tinhofer, Gottfried
6
2002
Circuit bases of strongly connected digraphs. Zbl 1055.05068
Gleiss, Petra M.; Leydold, Josef; Stadler, Peter F.
6
2003
Inferring phylogenetic trees from the knowledge of rare evolutionary events. Zbl 1386.05186
Hellmuth, Marc; Hernandez-Rosales, Maribel; Long, Yangjing; Stadler, Peter F.
6
2018
Spectral classes of regular, random, and empirical graphs. Zbl 1327.05205
Gu, Jiao; Jost, Jürgen; Liu, Shiping; Stadler, Peter F.
6
2016
Best match graphs and reconciliation of gene trees with species trees. Zbl 1434.05035
Geiß, Manuela; Laffitte, Marcos E. González; Sánchez, Alitzel López; Valdivia, Dulce I.; Hellmuth, Marc; Rosales, Maribel Hernández; Stadler, Peter F.
6
2020
A note on quasi-robust cycle bases. Zbl 1216.05019
Ostermeier, Philipp-Jens; Hellmuth, Marc; Leydold, Josef; Klemm, Konstantin; Stadler, Peter F.
5
2009
Approximate graph products. Zbl 1210.05125
Hellmuth, Marc; Imrich, Wilfried; Klöckl, Werner; Stadler, Peter F.
5
2009
Saddles and barrier in landscapes of generalized search operators. Zbl 1196.68229
Flamm, Christoph; Hofacker, Ivo L.; Stadler, Bärbel M. R.; Stadler, Peter F.
5
2007
The influence of mutation on autocatalytic reaction networks. Zbl 0807.92008
Stadler, Peter F.; Nuño, Juan Carlos
5
1994
Landscapes: Complex optimization problems and biopolymer structures. Zbl 0805.92016
Schuster, Peter; Stadler, Peter F.
5
1994
A software package for chemically inspired graph transformation. Zbl 1344.68105
Andersen, Jakob L.; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F.
5
2016
Evolving towards the hypercycle: a spatial model of molecular evolution. Zbl 1090.92027
Attolini, Camille Stephan-Otto; Stadler, Peter F.
5
2006
Minimum cycle bases of product graphs. Zbl 1009.05078
Imrich, Wilfried; Stadler, Peter F.
5
2002
Complete characterization of incorrect orthology assignments in best match graphs. Zbl 1460.92149
Schaller, David; Geiß, Manuela; Stadler, Peter F.; Hellmuth, Marc
5
2021
A note on fundamental, non-fundamental, and robust cycle bases. Zbl 1163.92002
Klemm, Konstantin; Stadler, Peter F.
4
2009
Graph Laplacians, nodal domains, and hyperplane arrangements. Zbl 1050.05081
Bıyıkoğlu, Türker; Hordijk, Wim; Leydold, Josef; Pisanski, Tomaž; Stadler, Peter F.
4
2004
50 shades of rule composition. From chemical reactions to higher levels of abstraction. Zbl 1402.92166
Andersen, Jakob Lykke; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F.
4
2014
Diagonalized Cartesian products of \(S\)-prime graphs are \(S\)-prime. Zbl 1232.05197
Hellmuth, Marc; Ostermeier, Lydia; Stadler, Peter F.
4
2012
A short note on undirected Fitch graphs. Zbl 1421.05076
Hellmuth, Marc; Long, Yangjing; Geiß, Manuela; Stadler, Peter F.
4
2018
Cograph editing: merging modules is equivalent to editing \(P_{4}\)s. Zbl 1441.05195
Fritz, Adrian; Hellmuth, Marc; Stadler, Peter F.; Wieseke, Nicolas
4
2020
Complexity of modification problems for best match graphs. Zbl 07331472
Schaller, David; Stadler, Peter F.; Hellmuth, Marc
3
2021
Small autocatalytic reaction networks. III: Monotone growth functions. Zbl 0758.92009
Stadler, Bärbel M. R.; Stadler, Peter F.
3
1991
Selection dynamics in autocatalytic systems: Templates replicating through binary ligation. Zbl 0942.92015
Wills, Peter R.; Kauffman, Stuart A.; Stadler, Bärbel M. R.; Stadler, Peter F.
3
1998
Landscape statistics of the low-autocorrelation binary string problem. Zbl 0970.82020
Ferreira, Fernando F.; Fontanari, José F.; Stadler, Peter F.
3
2000
Curve shortening by short rulers. Zbl 1347.53005
Stadler, Peter
3
2014
Complexity of modification problems for reciprocal best match graphs. Zbl 1443.92120
Hellmuth, Marc; Geiß, Manuela; Stadler, Peter F.
3
2020
Centers of complex networks. Zbl 1464.92114
Wuchty, Stefan; Stadler, Peter F.
3
2003
Funnels in energy landscapes. Zbl 1189.60137
Klemm, K.; Flamm, C.; Stadler, P. F.
2
2008
Combinatorial vector fields and the valley structure of fitness landscapes. Zbl 1205.92057
Stadler, Bärbel M. R.; Stadler, Peter F.
2
2010
Phylogenetic footprinting and consistent sets of local aligments. Zbl 1339.92059
Otto, Wolfgang; Stadler, Peter F.; Prohaska, Sonja J.
2
2011
Immune networks modeled by replicator equations. Zbl 0823.92008
Stadler, Peter F.; Schuster, Peter; Perelson, Alan S.
2
1994
The dynamics of locally adaptive parties under spatial voting. Zbl 0910.90045
Miller, J. H.; Stadler, P. F.
2
1998
Autocatalytic replication in a CSTR and constant organization. Zbl 1002.92563
Happel, Robert; Stadler, Peter F.
2
1999
Fractal geometry of spin-glass models. Zbl 0995.82037
Fontanari, José F.; Stadler, Peter F.
2
2002
Unique square property, equitable partitions, and product-like graphs. Zbl 1281.05115
Hellmuth, Marc; Ostermeier, Lydia; Stadler, Peter F.
2
2014
Higher separation axioms in generalized closure spaces. Zbl 1049.54002
Stadler, Bärbel M. R.; Stadler, Peter F.
2
2003
Random walks and orthogonal functions associated with highly symmetric graphs. Zbl 0835.05045
Stadler, Peter F.
2
1995
Permanence of sparse catalytic networks. Zbl 0864.92013
Stadler, Peter F.; Schuster, Peter
2
1996
Autocatalytic networks with translation. Zbl 0882.92012
Happel, Robert; Hecht, Robert; Stadler, Peter F.
2
1996
Curve shortening by short rulers. Zbl 1337.53049
Stadler, Peter
2
2016
Algebraic dynamic programming for multiple context-free grammars. Zbl 1344.68112
Riechert, Maik; Höner zu Siederdissen, Christian; Stadler, Peter F.
2
2016
Dynamics of autocatalytic replicator networks based on higher-order ligation reactions. Zbl 1323.92101
Stadler, Bärbel M. R.; Stadler, Peter F.; Schuster, Peter
2
2000
Symmetric circular matchings and RNA folding. Zbl 1232.05180
Hofacker, Ivo L.; Reidys, Christian M.; Stadler, Peter F.
2
2012
Complex adaptations and the structure of recombination spaces. Zbl 1032.92027
Wagner, Günter P.; Stadler, Peter F.
2
1999
Convex cycle bases. Zbl 1301.05235
Hellmuth, Marc; Leydold, Josef; Stadler, Peter F.
2
2014
Metastable states in short-ranged \(p\)-spin glasses. Zbl 0962.82079
De Oliveira, Viviane M.; Fontanari, José F.; Stadler, Peter F.
2
1999
A prime factor theorem for a generalized direct product. Zbl 1114.05045
Imrich, Wilfried; Stadler, Peter F.
2
2006
Innovation in gene regulation: the case of chromatin computation. Zbl 1406.92207
Prohaska, Sonja J.; Stadler, Peter F.; Krakauer, David C.
2
2010
Forbidden time travel: characterization of time-consistent tree reconciliation maps. Zbl 1443.92122
Nøjgaard, Nikolai; Geiß, Manuela; Merkle, Daniel; Stadler, Peter F.; Wieseke, Nicolas; Hellmuth, Marc
2
2017
Generalized Fitch graphs. II: Sets of binary relations that are explained by edge-labeled trees. Zbl 1442.05031
Hellmuth, Marc; Seemann, Carsten R.; Stadler, Peter F.
2
2020
Corrigendum to: “Best match graphs”. Zbl 07340472
Schaller, David; Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F.
2
2021
Navigating the chemical space of HCN polymerization and hydrolysis: guiding graph grammars by mass spectrometry data. Zbl 1341.82105
Andersen, Jakob L.; Andersen, Tommy; Flamm, Christoph; Hanczyc, Martin M.; Merkle, Daniel; Stadler, Peter F.
1
2013
Reconstruction of pedigrees in clonal plant populations. Zbl 1338.92090
Riester, Markus; Stadler, Peter F.; Klemm, Konstantin
1
2010
Autocatalytic networks with intermediates. I: Irreversible reactions. Zbl 0897.92040
Hecht, Robert; Happel, Robert; Schuster, Peter; Stadler, Peter F.
1
1997
Interchangeability of relevant cycles in graphs. Zbl 0939.05048
Gleiss, Petra M.; Leydold, Josef; Stadler, Peter F.
1
2000
On the complexity of reconstructing chemical reaction networks. Zbl 1320.80005
Fagerberg, Rolf; Flamm, Christoph; Merkle, Daniel; Peters, Philipp; Stadler, Peter F.
1
2013
Barrier trees on poset-valued landscapes. Zbl 1009.68571
Stadler, Peter F.; Flamm, Christoph
1
2003
Partially local multi-way alignments. Zbl 1403.68377
Retzlaff, Nancy; Stadler, Peter F.
1
2018
Algebraic dynamic programming on trees. Zbl 1461.68094
Berkemer, Sarah J.; Höner zu Siederdissen, Christian; Stadler, Peter F.
1
2017
Axiomatic characterization of transit functions of weak hierarchies. Zbl 1421.05029
Changat, Manoj; Narasimha-Shenoi, Prasanth G.; Stadler, Peter F.
1
2019
Connectivity spaces. Zbl 1398.54039
Stadler, Bärbel M. R.; Stadler, Peter F.
1
2015
Quasi-independence, homology and the unity of type: a topological theory of characters. Zbl 1464.92211
Wagner, Günter P.; Stadler, Peter F.
1
2003
Rule composition in graph transformation models of chemical reactions. Zbl 1468.05289
Andersen, Jakob L.; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F.
1
2018
Towards mechanistic prediction of mass spectra using graph transformation. Zbl 1468.92063
Andersen, Jakob L.; Fagerberg, Rolf; Flamm, Christoph; Kianian, Rojin; Merkle, Daniel; Stadler, Peter F.
1
2018
Best match graphs with binary trees. Zbl 1480.92153
Schaller, David; Geiß, Manuela; Hellmuth, Marc; Stadler, Peter F.
1
2021
Complete characterization of incorrect orthology assignments in best match graphs. Zbl 1460.92149
Schaller, David; Geiß, Manuela; Stadler, Peter F.; Hellmuth, Marc
5
2021
Complexity of modification problems for best match graphs. Zbl 07331472
Schaller, David; Stadler, Peter F.; Hellmuth, Marc
3
2021
Corrigendum to: “Best match graphs”. Zbl 07340472
Schaller, David; Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F.
2
2021
Best match graphs with binary trees. Zbl 1480.92153
Schaller, David; Geiß, Manuela; Hellmuth, Marc; Stadler, Peter F.
1
2021
Reciprocal best match graphs. Zbl 1433.05303
Geiß, Manuela; Stadler, Peter F.; Hellmuth, Marc
7
2020
Best match graphs and reconciliation of gene trees with species trees. Zbl 1434.05035
Geiß, Manuela; Laffitte, Marcos E. González; Sánchez, Alitzel López; Valdivia, Dulce I.; Hellmuth, Marc; Rosales, Maribel Hernández; Stadler, Peter F.
6
2020
Cograph editing: merging modules is equivalent to editing \(P_{4}\)s. Zbl 1441.05195
Fritz, Adrian; Hellmuth, Marc; Stadler, Peter F.; Wieseke, Nicolas
4
2020
Complexity of modification problems for reciprocal best match graphs. Zbl 1443.92120
Hellmuth, Marc; Geiß, Manuela; Stadler, Peter F.
3
2020
Generalized Fitch graphs. II: Sets of binary relations that are explained by edge-labeled trees. Zbl 1442.05031
Hellmuth, Marc; Seemann, Carsten R.; Stadler, Peter F.
2
2020
Best match graphs. Zbl 1415.92133
Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F.
11
2019
Axiomatic characterization of transit functions of weak hierarchies. Zbl 1421.05029
Changat, Manoj; Narasimha-Shenoi, Prasanth G.; Stadler, Peter F.
1
2019
Reconstructing gene trees from Fitch’s xenology relation. Zbl 1396.05025
Geiß, Manuela; Anders, John; Stadler, Peter F.; Wieseke, Nicolas; Hellmuth, Marc
14
2018
Inferring phylogenetic trees from the knowledge of rare evolutionary events. Zbl 1386.05186
Hellmuth, Marc; Hernandez-Rosales, Maribel; Long, Yangjing; Stadler, Peter F.
6
2018
A short note on undirected Fitch graphs. Zbl 1421.05076
Hellmuth, Marc; Long, Yangjing; Geiß, Manuela; Stadler, Peter F.
4
2018
Partially local multi-way alignments. Zbl 1403.68377
Retzlaff, Nancy; Stadler, Peter F.
1
2018
Rule composition in graph transformation models of chemical reactions. Zbl 1468.05289
Andersen, Jakob L.; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F.
1
2018
Towards mechanistic prediction of mass spectra using graph transformation. Zbl 1468.92063
Andersen, Jakob L.; Fagerberg, Rolf; Flamm, Christoph; Kianian, Rojin; Merkle, Daniel; Stadler, Peter F.
1
2018
The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations. Zbl 1368.05023
Hellmuth, Marc; Stadler, Peter F.; Wieseke, Nicolas
18
2017
Forbidden time travel: characterization of time-consistent tree reconciliation maps. Zbl 1443.92122
Nøjgaard, Nikolai; Geiß, Manuela; Merkle, Daniel; Stadler, Peter F.; Wieseke, Nicolas; Hellmuth, Marc
2
2017
Algebraic dynamic programming on trees. Zbl 1461.68094
Berkemer, Sarah J.; Höner zu Siederdissen, Christian; Stadler, Peter F.
1
2017
Spectral classes of regular, random, and empirical graphs. Zbl 1327.05205
Gu, Jiao; Jost, Jürgen; Liu, Shiping; Stadler, Peter F.
6
2016
A software package for chemically inspired graph transformation. Zbl 1344.68105
Andersen, Jakob L.; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F.
5
2016
Curve shortening by short rulers. Zbl 1337.53049
Stadler, Peter
2
2016
Algebraic dynamic programming for multiple context-free grammars. Zbl 1344.68112
Riechert, Maik; Höner zu Siederdissen, Christian; Stadler, Peter F.
2
2016
Connectivity spaces. Zbl 1398.54039
Stadler, Bärbel M. R.; Stadler, Peter F.
1
2015
50 shades of rule composition. From chemical reactions to higher levels of abstraction. Zbl 1402.92166
Andersen, Jakob Lykke; Flamm, Christoph; Merkle, Daniel; Stadler, Peter F.
4
2014
Curve shortening by short rulers. Zbl 1347.53005
Stadler, Peter
3
2014
Unique square property, equitable partitions, and product-like graphs. Zbl 1281.05115
Hellmuth, Marc; Ostermeier, Lydia; Stadler, Peter F.
2
2014
Convex cycle bases. Zbl 1301.05235
Hellmuth, Marc; Leydold, Josef; Stadler, Peter F.
2
2014
Orthology relations, symbolic ultrametrics, and cographs. Zbl 1408.05038
Hellmuth, Marc; Hernandez-Rosales, Maribel; Huber, Katharina T.; Moulton, Vincent; Stadler, Peter F.; Wieseke, Nicolas
25
2013
Navigating the chemical space of HCN polymerization and hydrolysis: guiding graph grammars by mass spectrometry data. Zbl 1341.82105
Andersen, Jakob L.; Andersen, Tommy; Flamm, Christoph; Hanczyc, Martin M.; Merkle, Daniel; Stadler, Peter F.
1
2013
On the complexity of reconstructing chemical reaction networks. Zbl 1320.80005
Fagerberg, Rolf; Flamm, Christoph; Merkle, Daniel; Peters, Philipp; Stadler, Peter F.
1
2013
A survey on hypergraph products. Zbl 1262.05110
Hellmuth, Marc; Ostermeier, Lydia; Stadler, Peter F.
8
2012
The Cartesian product of hypergraphs. Zbl 1242.05193
Ostermeier, Lydia; Hellmuth, Marc; Stadler, Peter F.
6
2012
Diagonalized Cartesian products of \(S\)-prime graphs are \(S\)-prime. Zbl 1232.05197
Hellmuth, Marc; Ostermeier, Lydia; Stadler, Peter F.
4
2012
Symmetric circular matchings and RNA folding. Zbl 1232.05180
Hofacker, Ivo L.; Reidys, Christian M.; Stadler, Peter F.
2
2012
Phylogenetic footprinting and consistent sets of local aligments. Zbl 1339.92059
Otto, Wolfgang; Stadler, Peter F.; Prohaska, Sonja J.
2
2011
Combinatorial vector fields and the valley structure of fitness landscapes. Zbl 1205.92057
Stadler, Bärbel M. R.; Stadler, Peter F.
2
2010
Innovation in gene regulation: the case of chromatin computation. Zbl 1406.92207
Prohaska, Sonja J.; Stadler, Peter F.; Krakauer, David C.
2
2010
Reconstruction of pedigrees in clonal plant populations. Zbl 1338.92090
Riester, Markus; Stadler, Peter F.; Klemm, Konstantin
1
2010
Local algorithms for the prime factorization of strong product graphs. Zbl 1205.05222
Hellmuth, Marc; Imrich, Wilfried; Klöckl, Werner; Stadler, Peter F.
6
2009
A note on quasi-robust cycle bases. Zbl 1216.05019
Ostermeier, Philipp-Jens; Hellmuth, Marc; Leydold, Josef; Klemm, Konstantin; Stadler, Peter F.
5
2009
Approximate graph products. Zbl 1210.05125
Hellmuth, Marc; Imrich, Wilfried; Klöckl, Werner; Stadler, Peter F.
5
2009
A note on fundamental, non-fundamental, and robust cycle bases. Zbl 1163.92002
Klemm, Konstantin; Stadler, Peter F.
4
2009
Funnels in energy landscapes. Zbl 1189.60137
Klemm, K.; Flamm, C.; Stadler, P. F.
2
2008
Laplacian eigenvectors of graphs. Perron-Frobenius and Faber-Krahn type theorems. Zbl 1129.05001
Biyikoğlu, Türker; Leydold, Josef; Stadler, Peter F.
34
2007
Saddles and barrier in landscapes of generalized search operators. Zbl 1196.68229
Flamm, Christoph; Hofacker, Ivo L.; Stadler, Bärbel M. R.; Stadler, Peter F.
5
2007
Evolving towards the hypercycle: a spatial model of molecular evolution. Zbl 1090.92027
Attolini, Camille Stephan-Otto; Stadler, Peter F.
5
2006
A prime factor theorem for a generalized direct product. Zbl 1114.05045
Imrich, Wilfried; Stadler, Peter F.
2
2006
Efficient computation of RNA folding dynamics. Zbl 1050.81729
Wolfinger, Michael T.; Svrcek-Seiler, W. Andreas; Flamm, Christoph; Hofacker, Ivo L.; Stadler, Peter F.
9
2004
Graph Laplacians, nodal domains, and hyperplane arrangements. Zbl 1050.05081
Bıyıkoğlu, Türker; Hordijk, Wim; Leydold, Josef; Pisanski, Tomaž; Stadler, Peter F.
4
2004
Minimum cycle bases of Halin graphs. Zbl 1022.05041
Stadler, Peter F.
15
2003
Molecular replicator dynamics. Zbl 1040.92010
Stadler, Bärbel M. R.; Stadler, Peter F.
11
2003
Circuit bases of strongly connected digraphs. Zbl 1055.05068
Gleiss, Petra M.; Leydold, Josef; Stadler, Peter F.
6
2003
Centers of complex networks. Zbl 1464.92114
Wuchty, Stefan; Stadler, Peter F.
3
2003
Higher separation axioms in generalized closure spaces. Zbl 1049.54002
Stadler, Bärbel M. R.; Stadler, Peter F.
2
2003
Barrier trees on poset-valued landscapes. Zbl 1009.68571
Stadler, Peter F.; Flamm, Christoph
1
2003
Quasi-independence, homology and the unity of type: a topological theory of characters. Zbl 1464.92211
Wagner, Günter P.; Stadler, Peter F.
1
2003
Combinatorial landscapes. Zbl 0996.92026
Reidys, Christian M.; Stadler, Peter F.
30
2002
Fast Fourier transform for fitness landscapes. Zbl 1004.92028
Rockmore, Dan; Kostelec, Peter; Hordijk, Wim; Stadler, Peter F.
7
2002
Landscapes on spaces of trees. Zbl 1016.92024
Bastert, Oliver; Rockmore, Dan; Stadler, Peter F.; Tinhofer, Gottfried
6
2002
Minimum cycle bases of product graphs. Zbl 1009.05078
Imrich, Wilfried; Stadler, Peter F.
5
2002
Fractal geometry of spin-glass models. Zbl 0995.82037
Fontanari, José F.; Stadler, Peter F.
2
2002
Discrete nodal domain theorems. Zbl 0990.05093
Davies, E. Brian; Gladwell, Graham M. L.; Leydold, Josef; Stadler, Peter F.
32
2001
Relevant cycles in chemical reaction networks. Zbl 1028.05108
Gleiss, Petra M.; Stadler, Peter F.; Wagner, Andreas; Fell, David A.
10
2001
Neutrality in fitness landscapes. Zbl 1113.92314
Reidys, Christian M.; Stadler, Peter F.
10
2001
Population dependent Fourier decomposition of fitness landscapes over recombination spaces: evolvability of complex characters. Zbl 1323.92135
Stadler, Peter F.; Seitz, Rudi; Wagner, Günter P.
6
2000
Landscape statistics of the low-autocorrelation binary string problem. Zbl 0970.82020
Ferreira, Fernando F.; Fontanari, José F.; Stadler, Peter F.
3
2000
Dynamics of autocatalytic replicator networks based on higher-order ligation reactions. Zbl 1323.92101
Stadler, Bärbel M. R.; Stadler, Peter F.; Schuster, Peter
2
2000
Interchangeability of relevant cycles in graphs. Zbl 0939.05048
Gleiss, Petra M.; Leydold, Josef; Stadler, Peter F.
1
2000
RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties. Zbl 1323.92149
Haslinger, Christian; Stadler, Peter F.
22
1999
Random field models for fitness landscapes. Zbl 0982.92024
Stadler, Peter F.; Happel, Robert
12
1999
Equitable partitions, coherent algebras and random walks: Applications to the correlation structure of landscapes. Zbl 1029.05128
Stadler, P. F.; Tinhofer, G.
7
1999
Autocatalytic replication in a CSTR and constant organization. Zbl 1002.92563
Happel, Robert; Stadler, Peter F.
2
1999
Complex adaptations and the structure of recombination spaces. Zbl 1032.92027
Wagner, Günter P.; Stadler, Peter F.
2
1999
Metastable states in short-ranged \(p\)-spin glasses. Zbl 0962.82079
De Oliveira, Viviane M.; Fontanari, José F.; Stadler, Peter F.
2
1999
Combinatorics of RNA secondary structures. Zbl 0918.05004
Hofacker, Ivo L.; Schuster, Peter; Stadler, Peter F.
39
1998
Minimal cycle bases of outerplanar graphs. Zbl 0895.05032
Leydold, Josef; Stadler, Peter F.
15
1998
Amplitude spectra of fitness landscapes. Zbl 0927.92026
Hordijk, Wim; Stadler, Peter F.
8
1998
Selection dynamics in autocatalytic systems: Templates replicating through binary ligation. Zbl 0942.92015
Wills, Peter R.; Kauffman, Stuart A.; Stadler, Bärbel M. R.; Stadler, Peter F.
3
1998
The dynamics of locally adaptive parties under spatial voting. Zbl 0910.90045
Miller, J. H.; Stadler, P. F.
2
1998
Generic properties of combinatory maps: Neutral networks of RNA secondary structures. Zbl 0925.92006
Reidys, Christian; Stadler, Peter F.; Schuster, Peter
15
1997
Autocatalytic networks with intermediates. I: Irreversible reactions. Zbl 0897.92040
Hecht, Robert; Happel, Robert; Schuster, Peter; Stadler, Peter F.
1
1997
Landscapes and their correlation functions. Zbl 1002.92547
Stadler, Peter F.
31
1996
Permanence of sparse catalytic networks. Zbl 0864.92013
Stadler, Peter F.; Schuster, Peter
2
1996
Autocatalytic networks with translation. Zbl 0882.92012
Happel, Robert; Hecht, Robert; Stadler, Peter F.
2
1996
Dynamics of small autocatalytic reaction networks. II: Replication, mutation and catalysis. Zbl 0813.92014
Stadler, Peter F.; Schnabl, Wolfgang; Forst, Christian V.; Schuster, Peter
9
1995
Random walks and orthogonal functions associated with highly symmetric graphs. Zbl 0835.05045
Stadler, Peter F.
2
1995
The influence of mutation on autocatalytic reaction networks. Zbl 0807.92008
Stadler, Peter F.; Nuño, Juan Carlos
5
1994
Landscapes: Complex optimization problems and biopolymer structures. Zbl 0805.92016
Schuster, Peter; Stadler, Peter F.
5
1994
Immune networks modeled by replicator equations. Zbl 0823.92008
Stadler, Peter F.; Schuster, Peter; Perelson, Alan S.
2
1994
The probability of permanence. Zbl 0778.92015
Stadler, Peter F.; Happel, Robert
7
1993
Random catalytic reaction networks. Zbl 0767.92001
Stadler, Peter F.; Fontana, Walter; Miller, John H.
6
1993
Mutation in autocatalytic reaction networks. An analysis based on perturbation theory. Zbl 0776.92007
Stadler, Peter F.; Schuster, Peter
23
1992
The landscape of the traveling salesman problem. Zbl 0979.90509
Stadler, Peter F.; Schnabl, Wolfgang
15
1992
Full characterization of a strange attractor. Chaotic dynamics in low- dimensional replicator systems. Zbl 0717.92001
Schnabl, Wolfgang; Stadler, Peter F.; Forst, Christian; Schuster, Peter
29
1991
Complementary replication. Zbl 0759.92006
Stadler, Peter F.
7
1991
Small autocatalytic reaction networks. III: Monotone growth functions. Zbl 0758.92009
Stadler, Bärbel M. R.; Stadler, Peter F.
3
1991
Dynamics of small autocatalytic reaction networks. I: Bifurcations, permanence and exclusion. Zbl 0707.92009
Stadler, Peter F.; Schuster, Peter
11
1990
all top 5

Cited by 698 Authors

70 Stadler, Peter F.
34 Hellmuth, Marc
23 Reidys, Christian Michael
10 Geiß, Manuela
9 Sardanyés, Josep
9 Schuster, Peter
8 Clote, Peter G.
7 Jin, Emma Yu
7 Ren, Han
7 Stadler, Bärbel M. R.
6 Ostermeier, Lydia
6 Schaller, David
6 Wieseke, Nicolas
5 Albrecht, Andreas A.
5 Bíyíkoğlu, Türker
5 Hernandez-Rosales, Maribel
5 Jost, Jürgen
5 Leydold, Josef
5 Solé, Ricard V.
4 Barnes, J. Wesley
4 Behr, Nicolas
4 Carmona, Ángeles
4 Gurski, Frank
4 Hammack, Richard H.
4 Komander, Dominique
4 Krug, Joachim
4 Long, Yangjing
4 Merkle, Daniel
4 Mitjana, Margarida
4 Mulas, Raffaella
4 Schneider, Johannes J.
4 Zhang, Dong
3 Band, Ram
3 Berkemer, Sarah J.
3 Berkolaiko, Gregory
3 Cardoso, Domingos Moreira
3 Chakraborty, Sagar
3 Changat, Manoj
3 Chicano, Francisco
3 Deng, Mo
3 Dimova, B.
3 Flamm, Christoph
3 Fontich, Ernest
3 Happel, Robert
3 Hofacker, Ivo L.
3 Höner zu Siederdissen, Christian
3 Hossein Nezhad, Ferdoos
3 Huber, Katharina T.
3 Kammerdiner, Alla R.
3 Klemm, Konstantin
3 Kranakis, Evangelos Konstantinou
3 Krizanc, Danny
3 Li, Thomas J. X.
3 López Sánchez, Alitzel
3 Mukhopadhyay, Archan
3 Nuño, Juan Carlos
3 Rama, Paula
3 Rehs, Carolin
3 Schmiegelt, Benjamin
3 Seemann, Carsten R.
3 Steinhöfel, Kathleen K.
3 Valdivia, Dulce I.
3 Vanneschi, Leonardo
3 Verel, Sebastien
3 Wang, Tianming
3 Zissimopoulos, Vassilis
2 Adami, Christoph
2 Alba, Enrique
2 Amadori, Anna Lisa
2 Andersen, Jakob Lykke
2 Angel, Eric
2 Attolini, Camille Stephan-Otto
2 Bayegan, Amir H.
2 Bendito, Enrique
2 Borga, Jacopo
2 Campos, Paulo R. A.
2 Cao, Ni
2 Chan, David M.
2 Chang, Kung-Ching
2 Chao, Fugang
2 Chávez, Edgar
2 Chen, William Yong-Chuan
2 Clausen, Michael
2 Collard, Philippe
2 Daneshgar, Amir
2 Dokov, Steftcho P.
2 Došlić, Tomislav
2 Dotú, Iván
2 Doungmo Goufo, Emile Franc
2 Drugan, Mădălina M.
2 El-Sharkasy, M. M.
2 Encinas, Andrés M.
2 Ferretti, Luca
2 Franke, John E.
2 Fritz, Adrian
2 Goldberg, Felix
2 González Laffitte, Marcos
2 Guillamon, Antoni
2 Hajiabolhassan, Hossein
2 Hecht, Robert
...and 598 more Authors
all top 5

Cited in 130 Serials

28 Journal of Mathematical Biology
26 Linear Algebra and its Applications
24 Journal of Theoretical Biology
20 Discrete Applied Mathematics
19 Theoretical Computer Science
17 Bulletin of Mathematical Biology
15 Discrete Mathematics
13 Mathematical Biosciences
9 Advances in Complex Systems
8 Physica D
8 Mathematics in Computer Science
7 Applied Mathematics and Computation
7 Computers & Operations Research
7 Applied Mathematics Letters
6 Journal of Statistical Physics
6 Journal of Combinatorial Optimization
5 Information Processing Letters
5 Theoretical Population Biology
5 European Journal of Combinatorics
5 Advances in Applied Mathematics
5 Algorithmica
4 Chaos, Solitons and Fractals
4 Graphs and Combinatorics
4 International Journal of Bifurcation and Chaos in Applied Sciences and Engineering
4 Chaos
4 The Art of Discrete and Applied Mathematics
3 Biological Cybernetics
3 Journal of Mathematical Analysis and Applications
3 Physica A
3 Journal of Difference Equations and Applications
3 Journal of Heuristics
3 International Journal of Modern Physics C
2 Advances in Mathematics
2 The Annals of Probability
2 Information Sciences
2 Journal of Combinatorial Theory. Series B
2 Journal of Graph Theory
2 Journal of Symbolic Computation
2 Journal of Economic Dynamics & Control
2 Mathematical and Computer Modelling
2 European Journal of Operational Research
2 Proceedings of the National Academy of Sciences of the United States of America
2 The Australasian Journal of Combinatorics
2 Calculus of Variations and Partial Differential Equations
2 The Electronic Journal of Combinatorics
2 Annals of Mathematics and Artificial Intelligence
2 INFORMS Journal on Computing
2 Journal of Mathematical Chemistry
2 Abstract and Applied Analysis
2 Mathematical Methods of Operations Research
2 Annales Henri Poincaré
2 Discrete and Continuous Dynamical Systems. Series B
2 SIAM Journal on Applied Dynamical Systems
2 Computational Biology and Chemistry
2 Journal of Discrete Algorithms
2 AKCE International Journal of Graphs and Combinatorics
2 Journal of Statistical Mechanics: Theory and Experiment
2 The European Physical Journal B. Condensed Matter and Complex Systems
2 Optimization Letters
2 Journal of Physics A: Mathematical and Theoretical
2 The Annals of Applied Statistics
2 International Journal of Biomathematics
1 Advances in Applied Probability
1 Artificial Intelligence
1 Computers & Mathematics with Applications
1 Communications in Mathematical Physics
1 Computer Methods in Applied Mechanics and Engineering
1 Inverse Problems
1 Journal of Computational Physics
1 Journal of the Franklin Institute
1 Journal of Mathematical Physics
1 Letters in Mathematical Physics
1 Linear and Multilinear Algebra
1 Physics Letters. A
1 Reviews of Modern Physics
1 Automatica
1 Computing
1 Journal of Combinatorial Theory. Series A
1 Journal of Computational and Applied Mathematics
1 Journal of Differential Equations
1 Kybernetes
1 Theory and Decision
1 Topology and its Applications
1 Systems & Control Letters
1 Statistics & Probability Letters
1 Annals of Global Analysis and Geometry
1 Journal of Classification
1 Acta Mathematicae Applicatae Sinica. English Series
1 Probability Theory and Related Fields
1 Constructive Approximation
1 Journal of Computer Science and Technology
1 Discrete & Computational Geometry
1 SIAM Journal on Discrete Mathematics
1 Science in China. Series A
1 European Journal of Applied Mathematics
1 Random Structures & Algorithms
1 Japan Journal of Industrial and Applied Mathematics
1 Computational Geometry
1 Bulletin of the American Mathematical Society. New Series
1 Journal of Computer and Systems Sciences International
...and 30 more Serials
all top 5

Cited in 41 Fields

203 Combinatorics (05-XX)
188 Biology and other natural sciences (92-XX)
75 Computer science (68-XX)
70 Operations research, mathematical programming (90-XX)
32 Dynamical systems and ergodic theory (37-XX)
22 Game theory, economics, finance, and other social and behavioral sciences (91-XX)
21 Probability theory and stochastic processes (60-XX)
18 Ordinary differential equations (34-XX)
15 Numerical analysis (65-XX)
13 Linear and multilinear algebra; matrix theory (15-XX)
11 Partial differential equations (35-XX)
10 Statistical mechanics, structure of matter (82-XX)
8 Quantum theory (81-XX)
7 Operator theory (47-XX)
7 General topology (54-XX)
7 Statistics (62-XX)
7 Systems theory; control (93-XX)
5 Group theory and generalizations (20-XX)
5 Information and communication theory, circuits (94-XX)
4 Calculus of variations and optimal control; optimization (49-XX)
4 Convex and discrete geometry (52-XX)
4 Manifolds and cell complexes (57-XX)
3 Category theory; homological algebra (18-XX)
3 Difference and functional equations (39-XX)
3 Differential geometry (53-XX)
2 Order, lattices, ordered algebraic structures (06-XX)
2 Number theory (11-XX)
2 Real functions (26-XX)
2 Potential theory (31-XX)
2 Harmonic analysis on Euclidean spaces (42-XX)
2 Functional analysis (46-XX)
2 Algebraic topology (55-XX)
2 Global analysis, analysis on manifolds (58-XX)
2 Mechanics of deformable solids (74-XX)
2 Classical thermodynamics, heat transfer (80-XX)
1 General and overarching topics; collections (00-XX)
1 Several complex variables and analytic spaces (32-XX)
1 Special functions (33-XX)
1 Abstract harmonic analysis (43-XX)
1 Mechanics of particles and systems (70-XX)
1 Optics, electromagnetic theory (78-XX)

Citations by Year