Computational Biology and Chemistry Short Title: Comput. Biol. Chem. Publisher: Elsevier (Pergamon), Oxford ISSN: 1476-9271 Online: http://www.sciencedirect.com/science/journal/14769271 Predecessor: Computers and Chemistry Comments: Journal; No longer indexed Documents Indexed: 370 Publications (2003–2013) References Indexed: 366 Publications with 11,423 References. all top 5 Latest Issues 42 (2013) 41 (2012) 40 (2012) 39 (2012) 37 (2012) 36 (2012) 35, No. 6 (2011) 35, No. 4 (2011) 35, No. 3 (2011) 35, No. 2 (2011) 35, No. 1 (2011) 34, No. 5-6 (2010) 34, No. 4 (2010) 34, No. 3 (2010) 34, No. 2 (2010) 34, No. 1 (2010) 33, No. 6 (2009) 33, No. 5 (2009) 33, No. 4 (2009) 33, No. 3 (2009) 33, No. 2 (2009) 33, No. 1 (2009) 32, No. 6 (2008) 32, No. 5 (2008) 32, No. 4 (2008) 32, No. 3 (2008) 32, No. 2 (2008) 32, No. 1 (2008) 31, No. 5-6 (2007) 31, No. 4 (2007) 31, No. 3 (2007) 31, No. 2 (2007) 31, No. 1 (2007) 30, No. 6 (2006) 30, No. 5 (2006) 30, No. 4 (2006) 30, No. 3 (2006) 30, No. 2 (2006) 30, No. 1 (2006) 29, No. 6 (2005) 29, No. 5 (2005) 29, No. 4 (2005) 29, No. 3 (2005) 29, No. 2 (2005) 29, No. 1 (2005) 28, No. 5-6 (2004) 28, No. 4 (2004) 28, No. 3 (2004) 28, No. 2 (2004) 28, No. 1 (2004) 27, No. 6 (2003) 27, No. 4-5 (2003) 27, No. 3 (2003) 27, No. 2 (2003) all top 5 Authors 8 Michel, Christian J. 7 Taylor, William R. 7 Viljoen, Hendrik J. 6 Crabbe, M. James C. 5 Cho, Kwang-Hyun 5 Pienaar, Elsje 4 Błażewicz, Jacek 4 Du, Zhihua 4 Gromiha, M. Michael 4 Li, Yixue 4 Mewes, Hans-Werner 4 Sadeghi, Mehdi 4 Zhang, Yuan 3 Albrecht, Andreas A. 3 Almeida, Antônio-Carlos G. 3 Axenovich, Tatiana I. 3 Bolshoy, Alexander 3 Cai, Yudong 3 Colonna, Giovanni 3 Costantini, Susan 3 Duarte, Mário A. 3 Facchiano, Angelo M. 3 Feng, Enmin 3 Formanowicz, Piotr 3 Gorodkin, Jan 3 Hénaut, Alain 3 Infantosi, Antonio Fernando C. 3 Lai, Yinglei 3 Levtsova, O. V. 3 Li, Menglong 3 Li, Wentian 3 Lin, Feng 3 Nasibov, Efendi N. 3 Oehmen, Christopher S. 3 Riva, Alessandra 3 Rodrigues, Antônio M. 3 Schnell, Santiago 3 Seligmann, Hervé 3 Shaitan, K. V. 3 Shimizu, Toshio 3 Song, Joon Jin 3 Takasaki, Shigeru 3 Teixeira, Hewerson Z. 3 Tetko, Igor V. 3 Toropov, Andrey A. 3 Ulanowicz, Robert E. 3 Utkin, Yu. N. 3 Wang, Ruisheng 3 Webb-Robertson, Bobbie-Jo M. 3 Whitney, Scott E. 3 Wu, Baolin 3 Xiao, Yi 3 Yang, Yaning 3 Yu, Weichuan 3 Zhao, Hongyu 3 Zheng, Nan 3 Zhong, Yang 2 Ahmad, Shandar 2 Antonov, Alexey V. 2 Bonatto, Diego 2 Britz, Dieter 2 Brojen Singh, R. K. 2 Çakır, Tunahan 2 Cao, Ying 2 Carpentier, Anne-Sophie 2 Chang, Hsueh-Wei 2 Chen, Hanlin 2 Chou, Kuochen 2 Chuang, Li-Yeh 2 Eslahchi, Changiz 2 Estrada, Ernesto 2 Fang, Weiwu 2 Fluitt, Aaron M. 2 Frey, Gabriel 2 Galat, Andrzej 2 Gong, Xi 2 Gribskov, Michael 2 Guo, Yanzhi 2 Han, Kyungsook 2 Hu, Zhangzhi 2 Ikeda, Masami 2 Jonassen, Inge 2 Kandemir-Cavas, Cagin 2 Kasprzak, Marta 2 Kim, Shinuk 2 Komeiji, Yuto 2 Korol, Abraham B. 2 Kumar, Vanaja 2 Lattimore, B. Samuel 2 Lee, Hojin 2 Leszczynski, Jerzy 2 Li, Siguang 2 Lin, Lei 2 Llabrés, Mercè 2 Luo, Yuping 2 Madhavi Sastry, G. 2 Markiewicz, Wojciech T. 2 Mester, D. I. 2 Mordvintsev, D. Yu. 2 Moshiri, Behzad ...and 897 more Authors all top 5 Fields 363 Biology and other natural sciences (92-XX) 70 Statistics (62-XX) 47 Computer science (68-XX) 24 Numerical analysis (65-XX) 22 Operations research, mathematical programming (90-XX) 12 Combinatorics (05-XX) 9 Probability theory and stochastic processes (60-XX) 8 Information and communication theory, circuits (94-XX) 5 Dynamical systems and ergodic theory (37-XX) 3 Partial differential equations (35-XX) 3 Systems theory; control (93-XX) 2 Optics, electromagnetic theory (78-XX) 2 Quantum theory (81-XX) 1 Linear and multilinear algebra; matrix theory (15-XX) 1 Special functions (33-XX) 1 Ordinary differential equations (34-XX) 1 Manifolds and cell complexes (57-XX) 1 Statistical mechanics, structure of matter (82-XX) 1 Game theory, economics, finance, and other social and behavioral sciences (91-XX) Publications by Year all cited Publications top 5 cited Publications Citations contained in zbMATH Open 169 Publications have been cited 553 times in 482 Documents Cited by ▼ Year ▼ Stochastic approaches for modelling in vivo reactions. Zbl 1087.92035Turner, T. E.; Schnell, S.; Burrage, K. 41 2004 A novel feature representation method based on Chou’s pseudo amino acid composition for protein structural class prediction. Zbl 1403.92221Sahu, Sitanshu Sekhar; Panda, Ganapati 27 2010 The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior. Zbl 1086.92018McCollum, James M.; Peterson, Gregory D.; Cox, Chris D.; Simpson, Michael L.; Samatova, Nagiza F. 18 2006 Improved binary PSO for feature selection using gene expression data. Zbl 1142.92319Chuang, Li-Yeh; Chang, Hsueh-Wei; Tu, Chung-Jui; Yang, Cheng-Hong 15 2008 Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes. Zbl 1102.92019Frey, Gabriel; Michel, Christian J. 14 2006 Circular code motifs in transfer and 16S ribosomal RNAs: a possible translation code in genes. Zbl 1365.92036Michel, Christian J. 13 2012 Identification of all trinucleotide circular codes. Zbl 1366.92047Michel, Christian J.; Pirillo, Giuseppe 12 2010 Damping of Crank-Nicolson error oscillations. Zbl 1039.92047Britz, D.; Østerby, O.; Strutwolf, J. 12 2003 Quantitative methods for ecological network analysis. Zbl 1088.92061Ulanowicz, Robert E. 12 2004 Optimal classification for time-course gene expression data using functional data analysis. Zbl 1158.62085Song, Joon Jin; Deng, Weiguo; Lee, Ho-Jin; Kwon, Deukwoo 11 2008 High order accurate, one-sided finite-difference approximations to concentration gradients at the boundaries, for the simulation of electrochemical reaction-diffusion problems in one-dimensional space geometry. Zbl 1048.92037Bieniasz, L. K. 9 2003 Haplotype assembly from aligned weighted SNP fragments. Zbl 1102.92031Zhao, Yuying; Wu, Lingyun; Zhang, Jihong; Wang, Ruisheng; Zhang, Xiangsun 9 2005 Stable feature selection for biomarker discovery. Zbl 1403.92068He, Zengyou; Yu, Weichuan 8 2010 An analysis of the Petri net based model of the human body iron homeostasis process. Zbl 1124.92007Sackmann, Andrea; Formanowicz, Dorota; Formanowicz, Piotr; Koch, Ina; Blazewicz, Jacek 8 2007 Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis. Zbl 1141.92312Fluitt, Aaron; Pienaar, Elsje; Viljoen, Hendrik 7 2007 Structural information content of networks: graph entropy based on local vertex functionals. Zbl 1141.92043Dehmer, Matthias; Emmert-Streib, Frank 7 2008 Clustering of time-course gene expression data using functional data analysis. Zbl 1122.92029Song, Joon Jin; Lee, Ho-Jin; Morris, Jeffrey S.; Kang, Sanghoon 7 2007 Gene selection from microarray data for cancer classification – a machine learning approach. Zbl 1095.92040Wang, Yu; Tetko, Igor V.; Hall, Mark A.; Frank, Eibe; Facius, Axel; Mayer, Klaus F. X.; Mewes, Hans W. 7 2005 Sparse optimal scoring for multiclass cancer diagnosis and biomarker detection using microarray data. Zbl 1158.92316Leng, Chenlei 6 2008 Developing Itô stochastic differential equation models for neuronal signal transduction pathways. Zbl 1098.92035Manninen, Tiina; Linne, Marja-Leena; Ruohonen, Keijo 6 2006 An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes. Zbl 1086.92038Frey, Gabriel; Michel, Christian J. 6 2006 Cluster-C, an algorithm for the large-scale clustering of protein sequences based on the extraction of maximal cliques. Zbl 1088.92024Mohseni-Zadeh, S.; Brézellec, P.; Risler, J.-L. 6 2004 Dealing with repetitions in sequencing by hybridization. Zbl 1118.92028Blazewicz, Jacek; Glover, Fred; Kasprzak, Marta; Markiewicz, Wojciech T.; Oğuz, Ceyda; Rebholz-Schuhmann, Dietrich; Swiercz, Aleksandra 6 2006 Computational method for inferring objective function of glycerol metabolism in Klebsiella pneumoniae. Zbl 1158.92013Gong, Zhaohua; Liu, Chongyang; Feng, Enmin; Zhang, Qingrui 5 2009 Hybrid particle swarm optimization and tabu search approach for selecting genes for tumor classification using gene expression data. Zbl 1142.92020Shen, Qi; Shi, Weimin; Kong, Wei 5 2008 Comparing two \(K\)-category assignments by a \(K\)-category correlation coefficient. Zbl 1088.92017Gorodkin, J. 5 2004 Integer linear programming as a tool for constructing trees from quartet data. Zbl 1102.92042Weyer-Menkhoff, Jan; Devauchelle, Claudine; Grossmann, Alex; Grünewald, Stefan 5 2005 Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence. Zbl 1119.92033Zhang, Tongliang; Ding, Yongsheng; Chou, Kuo-Chen 5 2006 A mathematical analysis of SELEX. Zbl 1124.92015Levine, Howard A.; Nilsen-Hamilton, Marit 5 2007 A local average connectivity-based method for identifying essential proteins from the network level. Zbl 1366.92046Li, Min; Wang, Jianxin; Chen, Xiang; Wang, Huan; Pan, Yi 4 2011 Photosynthetic models with maximum entropy production in irreversible charge transfer steps. Zbl 1035.92014Juretić, Davor; Županović, Paško 4 2003 Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns. Zbl 1403.92129Benard, Emmanuel; Michel, Christian J. 4 2009 Directional persistence and the optimality of run-and-tumble chemotaxis. Zbl 1403.92038Nicolau, Dan V. jun.; Armitage, Judith P.; Maini, Philip K. 4 2009 A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. Zbl 1403.92209Kavousi, Kaveh; Moshiri, Behzad; Sadeghi, Mehdi; Araabi, Babak N.; Moosavi-Movahedi, Ali Akbar 4 2011 Discrete-time stochastic modeling and simulation of biochemical networks. Zbl 1158.92018Sandmann, Werner 4 2008 HELFIT: Helix fitting by a total least squares method. Zbl 1158.62076Enkhbayar, Purevjav; Damdinsuren, Sodov; Osaki, Mitsuru; Matsushima, Norio 4 2008 Overlapping genetic codes for overlapping frameshifted genes in Testudines, and Lepidochelys olivacea as special case. Zbl 1365.92038Seligmann, Hervé 4 2012 Protein knots and fold complexity: some new twists. Zbl 1125.92028Taylor, William R. 4 2007 The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm. Zbl 1122.92051Wang, Ying; Feng, Enmin; Wang, Ruisheng; Zhang, Dan 4 2007 Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models. Zbl 1088.92042Tan, Yongxi; Shi, Leming; Tong, Weida; Hwang, G. T. Gene; Wang, Charles 4 2004 Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries. Zbl 1088.92014Błażewicz, Jacek; Formanowicz, Piotr; Kasprzak, Marta; Markiewicz, Wojciech T.; Świercz, Aleksandra 4 2004 A new family of metrics for biopolymer contact structures. Zbl 1088.92022Llabrés, M.; Rosselló, F. 4 2004 Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms. Zbl 1087.92019Berry, Emily A.; Dalby, Andrew R.; Yang, Zheng Rong 4 2004 A common sequence-associated physicochemical feature for proteins of beta-trefoil family. Zbl 1095.92043Xu, Ruizhen; Xiao, Yi 4 2005 Application of residue distribution along the sequence for discriminating outer membrane proteins. Zbl 1096.92015Gromiha, M. Michael; Ahmad, Shandar; Suwa, Makiko 4 2005 The ambush hypothesis at the whole-organism level: off frame, ‘hidden’ stops in vertebrate mitochondrial genes increase developmental stability. Zbl 1366.92050Seligmann, Hervé 3 2010 Simulating cellular dynamics through a coupled transcription, translation, metabolic model. Zbl 1035.92012Weitzke, Elizabeth L.; Ortoleva, Peter J. 3 2003 Rival penalized competitive learning (RPCL): A topology-determining algorithm for analyzing gene expression data. Zbl 1034.92011Nair, T. Murlidharan; Zheng, Christina L.; Fink, J. Lynn; Stuart, Robert O.; Gribskov, Michael 3 2003 Hybrid stochastic simulations of intracellular reaction-diffusion systems. Zbl 1403.92098Kalantzis, Georgios 3 2009 A stochastic evolution model for residue insertion-deletion independent from substitution. Zbl 1403.92141Lèbre, Sophie; Michel, Christian J. 3 2010 Stochastic protein folding simulation in the three-dimensional HP-model. Zbl 1159.92016Albrecht, A. A.; Skaliotis, A.; Steinhöfel, K. 3 2008 Robust data imputation. Zbl 1158.62074Branden, Karlien Vanden; Verboven, Sabine 3 2009 Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes. Zbl 1244.92019Qin, Wenli; Li, Yizhou; Li, Juan; Yu, Lezheng; Wu, Di; Jing, Runyu; Pu, Xuemei; Guo, Yanzhi; Li, Menglong 3 2012 Sequential imputation for missing values. Zbl 1142.62103Verboven, Sabine; Vanden Branden, Karlien; Goos, Peter 3 2007 A hybrid Bayesian network learning method for constructing gene networks. Zbl 1141.92319Wang, Mingyi; Chen, Zuozhou; Cloutier, Sylvie 3 2007 Hydrophobic collapse in (in silico) protein folding. Zbl 1098.92024Brylinski, Michal; Konieczny, Leszek; Roterman, Irena 3 2006 ECS: an automatic enzyme classifier based on functional domain composition. Zbl 1125.92027Lu, Lingyi; Qian, Ziliang; Cai, Yu-Dong; Li, Yixue 3 2007 Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis. Zbl 1088.92013Anishetty, Sharmila; Pulimi, Mrudula; Pennathur, Gautam 3 2005 Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Zbl 1087.92047Yu, Weichuan; Wu, Baolin; Lin, Ning; Stone, Kathy; Williams, Kenneth; Zhao, Hongyu 3 2006 Principles of rapid polymerase chain reactions: mathematical modeling and experimental verification. Zbl 1088.92027Whitney, Scott E.; Sudhir, Alugupally; Nelson, R. Michael; Viljoen, Hendrik J. 3 2004 A hierarchic collision detection algorithm for simple Brownian dynamics. Zbl 1366.92005Katsimitsoulia, Zoe; Taylor, William R. 2 2010 A model of tuberculosis transmission and intervention strategies in an urban residential area. Zbl 1366.92129Pienaar, Elsje; Fluitt, Aaron M.; Whitney, Scott E.; Freifeld, Alison G.; Viljoen, Hendrik J. 2 2010 Abstract next subvolume method: a logical process-based approach for spatial stochastic simulation of chemical reactions. Zbl 1366.92051Wang, Bing; Hou, Bonan; Xing, Fei; Yao, Yiping 2 2011 Some steps toward a central theory of ecosystem dynamics. Zbl 1035.92047Ulanowicz, Robert E. 2 2003 Finite difference method of simulation of non-steady-state ion transfer in electrochemical systems with allowance for migration. Zbl 1025.92016Volgin, V. M.; Volgina, O. V.; Davydov, A. D. 2 2003 A central partition of molecular conformational space. I: Basic structures. Zbl 1025.92006Gabarro-Arpa, Jacques 2 2003 Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion. Zbl 1403.92081Seligmann, Hervé 2 2011 Algebraic methods for inferring biochemical networks: a maximum likelihood approach. Zbl 1403.92090Craciun, Gheorghe; Pantea, Casian; Rempala, Grzegorz A. 2 2009 Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential. Zbl 1403.92197Aita, Takuyo; Nishigaki, Koichi; Husimi, Yuzuru 2 2010 Exploring case-control genetic association tests using phase diagrams. Zbl 1158.62080Li, Wentian; Suh, Young Ju; Yang, Yaning 2 2008 Plant microRNA detection using the circular code information. Zbl 1158.92009Ahmed, Ahmed; Michel, Christian J. 2 2008 Protein subcellular location prediction using optimally weighted fuzzy \(k\)-NN algorithm. Zbl 1158.92310Nasibov, Efendi; Kandemir-Cavas, Cagin 2 2008 Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets. Zbl 1158.92016Kielbassa, J.; Bortfeldt, R.; Schuster, S.; Koch, I. 2 2009 A hyper-heuristic for the longest common subsequence problem. Zbl 1244.92021Tabataba, Farzaneh Sadat; Mousavi, Sayyed Rasoul 2 2012 CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition. Zbl 1226.92020Khan, Asifullah; Majid, Abdul; Hayat, Maqsood 2 2011 Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks. Zbl 1365.92042Damiani, Chiara; Filisetti, Alessandro; Graudenzi, Alex; Lecca, Paola 2 2013 Model and simulation of \(\mathrm{Na}^+/\mathrm{K}^+\) pump phosphorylation in the presence of palytoxin. Zbl 1142.92325Rodrigues, Antônio M.; Almeida, Antônio-Carlos G.; Infantosi, Antonio F. C.; Teixeira, Hewerson Z.; Duarte, Mario A. 2 2008 Inferring gene regulatory networks from temporal expression profiles under time-delay and noise. Zbl 1122.92026Kim, Shinuk; Kim, Junil; Cho, Kwang-Hyun 2 2007 Parameter estimation in modulated, unbranched reaction chains within biochemical systems. Zbl 1087.92027Lall, Raman; Voit, Eberhard O. 2 2005 Using nearest feature line and tunable nearest neighbor methods for prediction of protein subcellular locations. Zbl 1087.92024Gao, Qing-Bin; Wang, Zheng-Zhi 2 2005 Classifying G-protein coupled receptors with bagging classification tree. Zbl 1089.92009Huang, Ying; Cai, Jun; Ji, Liang; Li, Yanda 2 2004 Fast and high precision algorithms for optimization in large-scale genomic problems. Zbl 1089.92013Mester, D. I.; Ronin, Y. I.; Nevo, E.; Korol, A. B. 2 2004 A molecular model for transcription in the RNA world based on the ribosome large subunit. Zbl 1089.92018Taylor, William R. 2 2004 PEACH 4 with ABINIT-MP: a general platform for classical and quantum simulations of biological molecules. Zbl 1089.92010Komeiji, Yuto; Inadomi, Yuichi; Nakano, Tatsuya 2 2004 Cycling in ecological networks: Finn’s index revisited. Zbl 1088.92052Allesina, Stefano; Ulanowicz, Robert E. 2 2004 A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. Zbl 1095.92054Lai, Yinglei; Zhao, Hongyu 2 2005 MSAID: multiple sequence alignment based on a measure of information discrepancy. Zbl 1096.92020Zhang, Min; Fang, Weiwu; Zhang, Junhua; Chi, Zhongxian 2 2005 Analyzing functional similarity of protein sequences with discrete wavelet transform. Zbl 1097.92024Wen, Zhining; Wang, Kelong; Li, Menglong; Nie, Fusheng; Yang, Yi 2 2005 Reconstruction of large phylogenetic trees: a parallel approach. Zbl 1102.92039Du, Zhihua; Lin, Feng; Roshan, Usman W. 2 2005 SVM-BALSA: Remote homology detection based on Bayesian sequence alignment. Zbl 1102.92029Webb-Robertson, Bobbie-Jo; Oehmen, Christopher; Matzke, Melissa 2 2005 The multi-step phosphorelay mechanism of unorthodox two-component systems in E. coli realizes ultrasensitivity to stimuli while maintaining robustness to noises. Zbl 1112.92022Kim, Jeong-Rae; Cho, Kwang-Hyun 2 2006 Identification of functional modules in a PPI network by clique percolation clustering. Zbl 1112.92028Zhang, Shihua; Ning, Xuemei; Zhang, Xiangsun 2 2006 Codon phylogenetic distance. Zbl 1124.92035Michel, Christian J. 2 2007 A new expertness index for assessment of secondary structure prediction engines. Zbl 1124.92014Kazemian, M.; Moshiri, B.; Nikbakht, H.; Lucas, C. 2 2007 Hidden symmetries in the primary sequences of beta-barrel family. Zbl 1124.92012Ji, Xiaofeng; Chen, Hanlin; Xiao, Yi 2 2007 Effect of internal viscosity on Brownian dynamics of DNA molecules in shear flow. Zbl 1124.92004Yang, Xiao-Dong; Melnik, Roderick V. N. 2 2007 Predicting water solubility and octanol water partition coefficient for carbon nanotubes based on the chiral vector. Zbl 1124.92062Toropov, Andrey A.; Leszczynska, Danuta; Leszczynski, Jerzy 2 2007 Angle dependent total cross sections and the optical theorem. Zbl 1134.33323Levitina, T. V.; Brändas, E. J. 1 2003 Expression profiles in the progression of ductal carcinoma in the breast. Zbl 1024.92011Lattimore, B. Samuel; Crabbe, M. James C. 1 2003 Predicting protein-protein interactions using graph invariants and a neural network. Zbl 1403.92072Knisley, D.; Knisley, J. 1 2011 Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks. Zbl 1365.92042Damiani, Chiara; Filisetti, Alessandro; Graudenzi, Alex; Lecca, Paola 2 2013 Circular code motifs in transfer and 16S ribosomal RNAs: a possible translation code in genes. Zbl 1365.92036Michel, Christian J. 13 2012 Overlapping genetic codes for overlapping frameshifted genes in Testudines, and Lepidochelys olivacea as special case. Zbl 1365.92038Seligmann, Hervé 4 2012 Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes. Zbl 1244.92019Qin, Wenli; Li, Yizhou; Li, Juan; Yu, Lezheng; Wu, Di; Jing, Runyu; Pu, Xuemei; Guo, Yanzhi; Li, Menglong 3 2012 A hyper-heuristic for the longest common subsequence problem. Zbl 1244.92021Tabataba, Farzaneh Sadat; Mousavi, Sayyed Rasoul 2 2012 Derivation of an artificial gene to improve classification accuracy upon gene selection. Zbl 1244.92044Seo, Minseok; Oh, Sejong 1 2012 A local average connectivity-based method for identifying essential proteins from the network level. Zbl 1366.92046Li, Min; Wang, Jianxin; Chen, Xiang; Wang, Huan; Pan, Yi 4 2011 A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. Zbl 1403.92209Kavousi, Kaveh; Moshiri, Behzad; Sadeghi, Mehdi; Araabi, Babak N.; Moosavi-Movahedi, Ali Akbar 4 2011 Abstract next subvolume method: a logical process-based approach for spatial stochastic simulation of chemical reactions. Zbl 1366.92051Wang, Bing; Hou, Bonan; Xing, Fei; Yao, Yiping 2 2011 Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion. Zbl 1403.92081Seligmann, Hervé 2 2011 CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition. Zbl 1226.92020Khan, Asifullah; Majid, Abdul; Hayat, Maqsood 2 2011 Predicting protein-protein interactions using graph invariants and a neural network. Zbl 1403.92072Knisley, D.; Knisley, J. 1 2011 Effective sample size: quick estimation of the effect of related samples in genetic case-control association analyses. Zbl 1403.92160Yang, Yaning; Remmers, Elaine F.; Ogunwole, Chukwuma B.; Kastner, Daniel L.; Gregersen, Peter K.; Li, Wentian 1 2011 A novel feature representation method based on Chou’s pseudo amino acid composition for protein structural class prediction. Zbl 1403.92221Sahu, Sitanshu Sekhar; Panda, Ganapati 27 2010 Identification of all trinucleotide circular codes. Zbl 1366.92047Michel, Christian J.; Pirillo, Giuseppe 12 2010 Stable feature selection for biomarker discovery. Zbl 1403.92068He, Zengyou; Yu, Weichuan 8 2010 The ambush hypothesis at the whole-organism level: off frame, ‘hidden’ stops in vertebrate mitochondrial genes increase developmental stability. Zbl 1366.92050Seligmann, Hervé 3 2010 A stochastic evolution model for residue insertion-deletion independent from substitution. Zbl 1403.92141Lèbre, Sophie; Michel, Christian J. 3 2010 A hierarchic collision detection algorithm for simple Brownian dynamics. Zbl 1366.92005Katsimitsoulia, Zoe; Taylor, William R. 2 2010 A model of tuberculosis transmission and intervention strategies in an urban residential area. Zbl 1366.92129Pienaar, Elsje; Fluitt, Aaron M.; Whitney, Scott E.; Freifeld, Alison G.; Viljoen, Hendrik J. 2 2010 Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential. Zbl 1403.92197Aita, Takuyo; Nishigaki, Koichi; Husimi, Yuzuru 2 2010 A Poisson-based adaptive affinity propagation clustering for SAGE data. Zbl 1403.92084Tang, DongMing; Zhu, QingXin; Yang, Fan 1 2010 Deposition and extension approach to find longest common subsequence for thousands of long sequences. Zbl 1365.92004Ning, Kang 1 2010 Computational method for inferring objective function of glycerol metabolism in Klebsiella pneumoniae. Zbl 1158.92013Gong, Zhaohua; Liu, Chongyang; Feng, Enmin; Zhang, Qingrui 5 2009 Computation of direct and inverse mutations with the SEGM web server (stochastic evolution of genetic motifs): an application to splice sites of human genome introns. Zbl 1403.92129Benard, Emmanuel; Michel, Christian J. 4 2009 Directional persistence and the optimality of run-and-tumble chemotaxis. Zbl 1403.92038Nicolau, Dan V. jun.; Armitage, Judith P.; Maini, Philip K. 4 2009 Hybrid stochastic simulations of intracellular reaction-diffusion systems. Zbl 1403.92098Kalantzis, Georgios 3 2009 Robust data imputation. Zbl 1158.62074Branden, Karlien Vanden; Verboven, Sabine 3 2009 Algebraic methods for inferring biochemical networks: a maximum likelihood approach. Zbl 1403.92090Craciun, Gheorghe; Pantea, Casian; Rempala, Grzegorz A. 2 2009 Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets. Zbl 1158.92016Kielbassa, J.; Bortfeldt, R.; Schuster, S.; Koch, I. 2 2009 Upstream curved sequences in E. coli are related to the regulation of transcription initiation. Zbl 1403.92078Nov Klaiman, Tamar; Hosid, Sergey; Bolshoy, Alexander 1 2009 A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis. Zbl 1403.92027Lai, Xin; Nikolov, Svetoslav; Wolkenhauer, Olaf; Vera, Julio 1 2009 Efficiency analysis of KNN and minimum distance-based classifiers in enzyme family prediction. Zbl 1403.92215Nasibov, Efendi; Kandemir-Cavas, Cagin 1 2009 Computational identification of novel microRNA homologs in the chimpanzee genome. Zbl 1156.92014Baev, Vesselin; Daskalova, Evelina; Minkov, Ivan 1 2009 Identifying the target mRNAs of microRNAs in colorectal cancer. Zbl 1156.92024Kim, Shinuk; Choi, Minsoo; Cho, Kwang-Hyun 1 2009 A simple method of identifying symmetric substructures of proteins. Zbl 1156.92016Chen, Hanlin; Huang, Yanzhao; Xiao, Yi 1 2009 Generating SNP barcode to evaluate SNP-SNP interaction of disease by particle swarm optimization. Zbl 1156.92022Chang, Hsueh-Wei; Yang, Cheng-Hong; Ho, Chang-Hsuan; Wen, Cheng-Hao; Chuang, Li-Yeh 1 2009 Improved binary PSO for feature selection using gene expression data. Zbl 1142.92319Chuang, Li-Yeh; Chang, Hsueh-Wei; Tu, Chung-Jui; Yang, Cheng-Hong 15 2008 Optimal classification for time-course gene expression data using functional data analysis. Zbl 1158.62085Song, Joon Jin; Deng, Weiguo; Lee, Ho-Jin; Kwon, Deukwoo 11 2008 Structural information content of networks: graph entropy based on local vertex functionals. Zbl 1141.92043Dehmer, Matthias; Emmert-Streib, Frank 7 2008 Sparse optimal scoring for multiclass cancer diagnosis and biomarker detection using microarray data. Zbl 1158.92316Leng, Chenlei 6 2008 Hybrid particle swarm optimization and tabu search approach for selecting genes for tumor classification using gene expression data. Zbl 1142.92020Shen, Qi; Shi, Weimin; Kong, Wei 5 2008 Discrete-time stochastic modeling and simulation of biochemical networks. Zbl 1158.92018Sandmann, Werner 4 2008 HELFIT: Helix fitting by a total least squares method. Zbl 1158.62076Enkhbayar, Purevjav; Damdinsuren, Sodov; Osaki, Mitsuru; Matsushima, Norio 4 2008 Stochastic protein folding simulation in the three-dimensional HP-model. Zbl 1159.92016Albrecht, A. A.; Skaliotis, A.; Steinhöfel, K. 3 2008 Exploring case-control genetic association tests using phase diagrams. Zbl 1158.62080Li, Wentian; Suh, Young Ju; Yang, Yaning 2 2008 Plant microRNA detection using the circular code information. Zbl 1158.92009Ahmed, Ahmed; Michel, Christian J. 2 2008 Protein subcellular location prediction using optimally weighted fuzzy \(k\)-NN algorithm. Zbl 1158.92310Nasibov, Efendi; Kandemir-Cavas, Cagin 2 2008 Model and simulation of \(\mathrm{Na}^+/\mathrm{K}^+\) pump phosphorylation in the presence of palytoxin. Zbl 1142.92325Rodrigues, Antônio M.; Almeida, Antônio-Carlos G.; Infantosi, Antonio F. C.; Teixeira, Hewerson Z.; Duarte, Mario A. 2 2008 On application of directons to functional classification of genes in prokaryotes. Zbl 1403.92159Wu, Hongwei; Mao, Fenglou; Olman, Victor; Xu, Ying 1 2008 Protein ligand interaction database (PLID). Zbl 1159.92309Reddy, A. Srinivas; Amarnath, H. S. Durga; Bapi, Raju S.; Sastry, G. Madhavi; Sastry, G. Narahari 1 2008 PK-means: A new algorithm for gene clustering. Zbl 1159.92018Du, Zhihua; Wang, Yiwei; Ji, Zhen 1 2008 Identifying essential conditions for refractoriness of Leão’s spreading depression – computational modeling. Zbl 1161.92015Teixeira, Hewerson Z.; Almeida, Antônio-Carlos G.; Infantosi, Antonio F. C.; Rodrigues, Antônio M.; Costa, Natália L.; Duarte, Mário A. 1 2008 Variable predictive model based classification algorithm for effective separation of protein structural classes. Zbl 1158.62081Raghuraj, Rao; Lakshminarayanan, S. 1 2008 A feature vector integration approach for a generalized support vector machine pairwise homology algorithm. Zbl 1158.92021Webb-Robertson, Bobbie-Jo M.; Oehmen, Christopher S.; Shah, Anuj R. 1 2008 Revisiting the relationship between compositional sequence complexity and periodicity. Zbl 1144.92014Bolshoy, Alexander 1 2008 Meta-analysis for ranked discovery datasets: theoretical framework and empirical demonstration for microarrays. Zbl 1144.62363Zintzaras, Elias; Ioannidis, John P. A. 1 2008 Oscillations of Hes7 caused by negative autoregulation and ubiquitination. Zbl 1274.92043Zeiser, S.; Rivera, O.; Kuttler, C.; Hense, B.; Lasser, R.; Winkler, G. 1 2008 Subsequence-based feature map for protein function classification. Zbl 1141.92018Sarac, Omer Sinan; Gürsoy-Yüzügüllü, Özge; Cetin-Atalay, Rengul; Atalay, Volkan 1 2008 An analysis of the Petri net based model of the human body iron homeostasis process. Zbl 1124.92007Sackmann, Andrea; Formanowicz, Dorota; Formanowicz, Piotr; Koch, Ina; Blazewicz, Jacek 8 2007 Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis. Zbl 1141.92312Fluitt, Aaron; Pienaar, Elsje; Viljoen, Hendrik 7 2007 Clustering of time-course gene expression data using functional data analysis. Zbl 1122.92029Song, Joon Jin; Lee, Ho-Jin; Morris, Jeffrey S.; Kang, Sanghoon 7 2007 A mathematical analysis of SELEX. Zbl 1124.92015Levine, Howard A.; Nilsen-Hamilton, Marit 5 2007 Protein knots and fold complexity: some new twists. Zbl 1125.92028Taylor, William R. 4 2007 The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm. Zbl 1122.92051Wang, Ying; Feng, Enmin; Wang, Ruisheng; Zhang, Dan 4 2007 Sequential imputation for missing values. Zbl 1142.62103Verboven, Sabine; Vanden Branden, Karlien; Goos, Peter 3 2007 A hybrid Bayesian network learning method for constructing gene networks. Zbl 1141.92319Wang, Mingyi; Chen, Zuozhou; Cloutier, Sylvie 3 2007 ECS: an automatic enzyme classifier based on functional domain composition. Zbl 1125.92027Lu, Lingyi; Qian, Ziliang; Cai, Yu-Dong; Li, Yixue 3 2007 Inferring gene regulatory networks from temporal expression profiles under time-delay and noise. Zbl 1122.92026Kim, Shinuk; Kim, Junil; Cho, Kwang-Hyun 2 2007 Codon phylogenetic distance. Zbl 1124.92035Michel, Christian J. 2 2007 A new expertness index for assessment of secondary structure prediction engines. Zbl 1124.92014Kazemian, M.; Moshiri, B.; Nikbakht, H.; Lucas, C. 2 2007 Hidden symmetries in the primary sequences of beta-barrel family. 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Zbl 1122.92024Costantini, S.; Colonna, G.; Facchiano, A. M. 1 2007 Chromosome segregation in Escherichia coli division: a free energy-driven string model. Zbl 1122.92023Fan, J.; Tuncay, K.; Ortoleva, P. J. 1 2007 Global warming and coral reefs: modelling the effect of temperature on Acropora palmata colony growth. Zbl 1122.92063Crabbe, M. James C. 1 2007 SMILES as an alternative to the graph in QSAR modelling of bee toxicity. Zbl 1124.62086Toropov, Andrey A.; Benfenati, Emilio 1 2007 A clustering algorithm based on two distance functions for MEC model. Zbl 1124.92019Wang, Ying; Feng, Enmin; Wang, Ruisheng 1 2007 The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior. Zbl 1086.92018McCollum, James M.; Peterson, Gregory D.; Cox, Chris D.; Simpson, Michael L.; Samatova, Nagiza F. 18 2006 Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes. Zbl 1102.92019Frey, Gabriel; Michel, Christian J. 14 2006 Developing Itô stochastic differential equation models for neuronal signal transduction pathways. Zbl 1098.92035Manninen, Tiina; Linne, Marja-Leena; Ruohonen, Keijo 6 2006 An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes. Zbl 1086.92038Frey, Gabriel; Michel, Christian J. 6 2006 Dealing with repetitions in sequencing by hybridization. Zbl 1118.92028Blazewicz, Jacek; Glover, Fred; Kasprzak, Marta; Markiewicz, Wojciech T.; Oğuz, Ceyda; Rebholz-Schuhmann, Dietrich; Swiercz, Aleksandra 6 2006 Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence. Zbl 1119.92033Zhang, Tongliang; Ding, Yongsheng; Chou, Kuo-Chen 5 2006 Hydrophobic collapse in (in silico) protein folding. Zbl 1098.92024Brylinski, Michal; Konieczny, Leszek; Roterman, Irena 3 2006 Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Zbl 1087.92047Yu, Weichuan; Wu, Baolin; Lin, Ning; Stone, Kathy; Williams, Kenneth; Zhao, Hongyu 3 2006 The multi-step phosphorelay mechanism of unorthodox two-component systems in E. coli realizes ultrasensitivity to stimuli while maintaining robustness to noises. Zbl 1112.92022Kim, Jeong-Rae; Cho, Kwang-Hyun 2 2006 Identification of functional modules in a PPI network by clique percolation clustering. Zbl 1112.92028Zhang, Shihua; Ning, Xuemei; Zhang, Xiangsun 2 2006 Multilocus consensus genetic maps (MCGM): Formulation, algorithms, and results. Zbl 1087.92030Mester, D. I.; Ronin, Y. I.; Korostishevsky, M. A.; Pikus, V. L.; Glazman, A. E.; Korol, A. B. 1 2006 Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. Zbl 1088.92023Marashi, Sayed-Amir; Goodarzi, Hani; Sadeghi, Mehdi; Eslahchi, Changiz; Pezeshk, Hamid 1 2006 Construction and characterization of a rock-cluster-based EST analysis pipeline. Zbl 1088.92033Zhu, Tao; Zhou, Jianfeng; An, Yuming; Zhou, Jinhua; Li, Hongyu; Xu, Gang; Ma, Ding 1 2006 Modelling variations in corallite morphology of Galaxea fascicularis coral colonies with depth and light on coastal fringing reefs in the Wakatobi Marine National Park (S. E. Sulawesi, Indonesia). Zbl 1108.92041Crabbe, M. James C.; Smith, David J. 1 2006 Selecting effective siRNA sequences based on the self-organizing map and statistical techniques. Zbl 1102.92027Takasaki, Shigeru; Kawamura, Yoshihiro; Konagaya, Akihiko 1 2006 Predicting \(O\)-glycosylation sites in mammalian proteins by using SVMs. Zbl 1102.92022Li, Sujun; Liu, Boshu; Zeng, Rong; Cai, Yudong; Li, Yixue 1 2006 Spontaneous formation of annular structures observed in molecular dynamics simulations of polyglutamine peptides. Zbl 1102.92024Marchut, Alexander J.; Hall, Carol K. 1 2006 Identification of critical genes in microarray experiments by a neuro-fuzzy approach. Zbl 1119.92025Chen, Chin-Fu; Feng, Xin; Szeto, Jack 1 2006 ...and 69 more Documents all cited Publications top 5 cited Publications all top 5 Cited by 1,178 Authors 26 Michel, Christian J. 8 Błażewicz, Jacek 8 Dehmer, Matthias 8 Fimmel, Elena 8 Strüngmann, Lutz H. 6 Jia, Jiteng 6 Pirillo, Giuseppe 6 Wolf, Verena 5 Chou, Kuochen 5 Formanowicz, Piotr 4 Albrecht, Andreas A. 4 Feng, Enmin 4 Świercz, Aleksandra 4 Thanh, Vo Hong 4 Viljoen, Hendrik J. 4 Xiao, Xuan 3 Aita, Takuyo 3 Almeida, Antônio-Carlos G. 3 Benfenati, Emilio 3 Burrage, Kevin 3 Crabbe, M. James C. 3 Formanowicz, Dorota 3 Giannerini, Simone 3 Grünewald, Stefan 3 Henzinger, Thomas A. 3 Husimi, Yuzuru 3 Khan, Asifullah 3 Leszczynska, Danuta 3 Leszczynski, Jerzy 3 Levine, Howard Allen 3 Lin, Hao 3 Moshiri, Behzad 3 Moulton, Vincent L. 3 Mousavi, Sayyed Rasoul 3 Nasibov, Efendi N. 3 Pan, Wei 3 Peng, Xinjun 3 Pienaar, Elsje 3 Sadeghi, Mehdi 3 Sandmann, Werner 3 Schnell, Santiago 3 Seligmann, Hervé 3 Seo, Yeon-Jung 3 Steinhöfel, Kathleen K. 3 Toropov, Andrey A. 3 Toropova, Alla P. 3 Voit, Eberhard Otto 3 Wang, Jianxin 3 Wang, Lei 3 Wang, Yifei 3 Wu, Lingyun 2 Anderson, David Frederick 2 Araabi, Babak Nadjar 2 Bahi, Jacques Mohcine 2 Benard, Emmanuel 2 Bersani, Alberto Maria 2 Bersani, Enrico 2 Bieniasz, Lesław K. 2 Burke, Edmund Kieran 2 Cao, Shujuan 2 Chen, Hanlin 2 Chen, Jian-er 2 Cheng, Guanming 2 Cho, Kwang-Hyun 2 Cox, Chris D. 2 Dehzangi, Abdollah 2 Deng, Bo 2 Ding, Hui 2 Duarte, Mário A. 2 Eilertsen, Justin S. 2 Emmert-Streib, Frank 2 Frey, Gabriel 2 Gabarro-Arpa, Jacques 2 Georgiou, Dimitrios N. 2 Gonzalez, Diego Luis 2 Grima, Ramon 2 Gromiha, M. Michael 2 Hayat, Maqsood 2 He, Qi 2 Higham, Desmond J. 2 Huber, Katharina T. 2 Infantosi, Antonio Fernando C. 2 Jeong, In-Seon 2 Ji, Xiaofeng 2 Jobstmann, Barbara 2 Kandemir-Cavas, Cagin 2 Kang, Hye-Won 2 Kang, Seungho 2 Karakasidis, Theodoros E. 2 Kasprzak, Marta 2 Kavousi, Kaveh 2 Khaliq, Abdul Q. M. 2 Konieczny, Leszek 2 Lèbre, Sophie 2 Li, Dongfen 2 Li, Wentian 2 Liao, Xiaofeng 2 Lim, Hyeong-Seok 2 Lyons, James E. 2 McCollum, James M. ...and 1,078 more Authors all top 5 Cited in 130 Journals 87 Journal of Theoretical Biology 81 Computational Biology and Chemistry 23 Bulletin of Mathematical Biology 16 Journal of Mathematical Chemistry 15 Mathematical Biosciences 12 Applied Mathematics and Computation 9 Computational & Mathematical Methods in Medicine 7 Journal of Mathematical Biology 7 Theoretical Computer Science 7 Computational Statistics and Data Analysis 6 Computers & Mathematics with Applications 6 Physica A 6 Information Sciences 6 Mathematical Problems in Engineering 5 Journal of Computational and Applied Mathematics 5 Pattern Recognition 5 Electronic Journal of Statistics 4 Journal of Computational Physics 4 Computers & Operations Research 4 Annals of Operations Research 4 Mathematical Biosciences and Engineering 3 Discrete Applied Mathematics 3 International Journal of Theoretical Physics 3 Journal of Classification 3 Applied Mathematical Modelling 3 European Journal of Operational Research 3 International Journal of Computer Mathematics 3 Journal of Applied Statistics 3 Entropy 3 Statistical Applications in Genetics and Molecular Biology 2 Journal of Multivariate Analysis 2 Applied Mathematics and Mechanics. 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Simulation and Computation 1 Journal of Statistical Computation and Simulation 1 Proceedings of the National Academy of Sciences of the United States of America 1 SIAM Journal on Applied Mathematics 1 International Journal of Bifurcation and Chaos in Applied Sciences and Engineering 1 Test 1 Russian Journal of Mathematical Physics 1 International Journal of Numerical Methods for Heat & Fluid Flow 1 Filomat 1 Russian Journal of Numerical Analysis and Mathematical Modelling 1 Complexity 1 International Transactions in Operational Research 1 ACM Transactions on Modeling and Computer Simulation 1 Science in China. Series E 1 Differential Equations and Dynamical Systems 1 Optimization Methods & Software 1 Soft Computing 1 Journal of Shanghai University 1 Mathematical and Computer Modelling of Dynamical Systems 1 Journal of the Royal Statistical Society. Series B. Statistical Methodology 1 Sibirskiĭ Zhurnal Industrial’noĭ Matematiki 1 Discrete Dynamics in Nature and Society ...and 30 more Journals all top 5 Cited in 31 Fields 339 Biology and other natural sciences (92-XX) 106 Statistics (62-XX) 80 Computer science (68-XX) 60 Numerical analysis (65-XX) 42 Operations research, mathematical programming (90-XX) 40 Probability theory and stochastic processes (60-XX) 36 Combinatorics (05-XX) 30 Information and communication theory, circuits (94-XX) 19 Partial differential equations (35-XX) 18 Ordinary differential equations (34-XX) 17 Systems theory; control (93-XX) 16 Dynamical systems and ergodic theory (37-XX) 9 Linear and multilinear algebra; matrix theory (15-XX) 7 Classical thermodynamics, heat transfer (80-XX) 6 Quantum theory (81-XX) 6 Statistical mechanics, structure of matter (82-XX) 4 Manifolds and cell complexes (57-XX) 4 Optics, electromagnetic theory (78-XX) 3 General and overarching topics; collections (00-XX) 3 Mathematical logic and foundations (03-XX) 3 Fluid mechanics (76-XX) 3 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 2 Harmonic analysis on Euclidean spaces (42-XX) 1 Number theory (11-XX) 1 Commutative algebra (13-XX) 1 Real functions (26-XX) 1 Integral equations (45-XX) 1 Functional analysis (46-XX) 1 Calculus of variations and optimal control; optimization (49-XX) 1 Mechanics of deformable solids (74-XX) 1 Geophysics (86-XX) Citations by Year