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DEseq

swMATH ID: 10344
Software Authors: Simon Anders
Description: DESeq: Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.
Homepage: http://www-huber.embl.de/users/anders/DESeq/
Dependencies: R
Related Software: Bioconductor; edgeR; R; DESeq2; BaySeq; Voom; limma; gcrma; QuasiSeq; RSEM; EBSeq; DEGseq; GPSeq; TopHat; KEGG; ggplot2; HTSeq; MAST; RUVseq; ShrinkBayes
Cited in: 65 Documents
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Cited by 225 Authors

6 Nettleton, Dan
5 Liu, Peng
3 Smyth, Gordon K.
2 Gill, Ryan S.
2 Holmes, Susan P.
2 Huang, Haiyan
2 Ibrahim, Joseph George
2 Ji, Tieming
2 Jia, Chen
2 Lun, Aaron T. L.
2 Park, Junyong
2 Si, Yaqing
2 Sun, Wei
2 Witten, Daniela M.
2 Zhao, Hongyu
2 Zhong, Hua
1 Alfò, Marco
1 Allen, Genevera I.
1 Alvarez-Castro, Ignacio
1 Ambroise, Christophe
1 Auer, Paul L.
1 Bacallado, Sergio
1 Bandara, Udika
1 Bataillon, Guillaume
1 Bécu, Jean-Michel
1 Beißbarth, Tim
1 Bi, Ran
1 Bickel, Peter John
1 Boley, Nathan
1 Bonafede, Elisabetta
1 Bouguila, Nizar
1 Bouveyron, Charles
1 Brown, James Bentley
1 Buffenstein, Rochelle
1 Celedon, Juan C.
1 Celeux, Gilles
1 Chang, Howard H.
1 Chang, Jeff H.
1 Chen, Mengjie
1 Chen, Minghui
1 Chen, Songxi
1 Chen, Wei
1 Chen, Yunshun
1 Cheng, Jianlin
1 Chung, Dongjun
1 Collado Torres, Leonardo
1 Cooper, Nigel G. F.
1 Crawford, Lorin
1 Cui, Shiqi
1 Cumbie, Jason S.
1 Dadaneh, Siamak Zamani
1 Daghyani, Masoud
1 Dalmasso, Cyril
1 Datta, Somnath
1 Datta, Susmita
1 Devarajan, Karthik
1 Di, Yanming
1 Dobriban, Edgar
1 Doerge, Rebecca W.
1 Du, Ruofei
1 Dudoit, Sandrine
1 Fang, Zhide
1 Favaro, Stefano
1 Feng, Ziding
1 Ferguson, John P.
1 Frazee, Alyssa C.
1 Fu, Rong
1 Gallopin, Mélina
1 Gazdar, Adi F.
1 Gelfond, Jonathan A. L.
1 Ghosh, Debashis
1 Girirajan, Santhosh
1 Gonçalves, Flávio Bambirra
1 Grandvalet, Yves
1 Gu, Jingkai
1 Haas, Stefan A.
1 Han, SungWon
1 Hanash, Samir M.
1 Henninger, Eric
1 Hibbs, Matthew
1 Hu, Yijuan
1 Hu, Zongliang
1 Huttenhower, Curtis
1 Jaffe, Andrew E.
1 Jaffrézic, Florence
1 Jeganathan, Pratheepa
1 Jeong, Seongmun
1 Jeske, Daniel R.
1 Johnson, Marla
1 Jouvin, Nicolas
1 Jung, Klaus
1 Kališnik Verovšek, Sara
1 Kalscheuer, Vera
1 Kechris, Katherina J.
1 Keles, Sunduz
1 Kendziorski, Christina
1 Khang, Tsung Fei
1 Kim, Jane H.
1 Kinahan, Sean
1 Klawonn, Frank
...and 125 more Authors

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