DEseq swMATH ID: 10344 Software Authors: Simon Anders Description: DESeq: Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution. Homepage: http://www-huber.embl.de/users/anders/DESeq/ Dependencies: R Related Software: Bioconductor; edgeR; R; BaySeq; DESeq2; QuasiSeq; Voom; limma; gcrma; EBSeq; DEGseq; TopHat; KEGG; RSEM; HTSeq; MAST; GPSeq; RUVseq; ShrinkBayes; ARACNE Cited in: 57 Publications all top 5 Cited by 207 Authors 6 Nettleton, Dan 4 Liu, Peng 3 Smyth, Gordon K. 2 Gill, Ryan S. 2 Huang, Haiyan 2 Ibrahim, Joseph George 2 Ji, Tieming 2 Lun, Aaron T. L. 2 Park, Junyong 2 Si, Yaqing 2 Sun, Wei 2 Witten, Daniela M. 2 Zhao, Hongyu 2 Zhong, Hua 1 Alfò, Marco 1 Allen, Genevera I. 1 Alvarez-Castro, Ignacio 1 Ambroise, Christophe 1 Auer, Paul L. 1 Bacallado, Sergio 1 Bandara, Udika 1 Bataillon, Guillaume 1 Bécu, Jean-Michel 1 Beißbarth, Tim 1 Bickel, Peter John 1 Boley, Nathan 1 Bonafede, Elisabetta 1 Bouguila, Nizar 1 Bouveyron, Charles 1 Brown, James Bentley 1 Buffenstein, Rochelle 1 Celedon, Juan C. 1 Celeux, Gilles 1 Chang, Howard H. 1 Chang, Jeff H. 1 Chen, Mengjie 1 Chen, Minghui 1 Chen, Songxi 1 Chen, Yunshun 1 Cheng, Jianlin 1 Chung, Dongjun 1 Collado Torres, Leonardo 1 Cooper, Nigel G. F. 1 Crawford, Lorin 1 Cui, Shiqi 1 Cumbie, Jason S. 1 Dadaneh, Siamak Zamani 1 Daghyani, Masoud 1 Dalmasso, Cyril 1 Datta, Somnath 1 Datta, Susmita 1 Di, Yanming 1 Dobriban, Edgar 1 Doerge, Rebecca W. 1 Du, Ruofei 1 Dudoit, Sandrine 1 Fang, Zhide 1 Favaro, Stefano 1 Feng, Ziding 1 Ferguson, John P. 1 Frazee, Alyssa C. 1 Fu, Rong 1 Gallopin, Mélina 1 Gazdar, Adi F. 1 Gelfond, Jonathan A. L. 1 Ghosh, Debashis 1 Girirajan, Santhosh 1 Gonçalves, Flávio Bambirra 1 Grandvalet, Yves 1 Gu, Jingkai 1 Haas, Stefan A. 1 Han, SungWon 1 Hanash, Samir M. 1 Henninger, Eric 1 Hibbs, Matthew 1 Holmes, Susan P. 1 Hou, Lin 1 Hu, Yijuan 1 Huttenhower, Curtis 1 Jaffe, Andrew E. 1 Jaffrézic, Florence 1 Jeong, Seongmun 1 Jia, Chen 1 Johnson, Marla 1 Jouvin, Nicolas 1 Jung, Klaus 1 Kališnik Verovšek, Sara 1 Kalscheuer, Vera 1 Kechris, Katherina J. 1 Keles, Sunduz 1 Kendziorski, Christina 1 Kinahan, Sean 1 Klawonn, Frank 1 Kong, Yan 1 Korthauer, Keegan 1 Kramer, Frank 1 Kruppa, Jochen 1 Kuczek, Thomas 1 Langmead, Ben 1 Latouche, Pierre ...and 107 more Authors all top 5 Cited in 27 Serials 15 Statistical Applications in Genetics and Molecular Biology 8 The Annals of Applied Statistics 5 Biometrics 4 Journal of Agricultural, Biological, and Environmental Statistics 2 Mathematical Biosciences and Engineering 1 The Annals of Statistics 1 Journal of the American Statistical Association 1 Kybernetika 1 Statistics & Probability Letters 1 Statistical Science 1 Computational Statistics 1 Communications in Statistics. Theory and Methods 1 Journal of Statistical Computation and Simulation 1 SIAM Journal on Applied Mathematics 1 Computational Statistics and Data Analysis 1 Test 1 Lifetime Data Analysis 1 Journal of Machine Learning Research (JMLR) 1 Statistical Methods and Applications 1 Journal of the Korean Statistical Society 1 Computational & Mathematical Methods in Medicine 1 Electronic Journal of Statistics 1 Journal of Computational and Graphical Statistics 1 Statistics and Computing 1 Journal of Theoretical Biology 1 SIAM Journal on Applied Algebra and Geometry 1 Frontiers in Probability and the Statistical Sciences all top 5 Cited in 8 Fields 45 Statistics (62-XX) 34 Biology and other natural sciences (92-XX) 3 Computer science (68-XX) 1 Algebraic geometry (14-XX) 1 Algebraic topology (55-XX) 1 Probability theory and stochastic processes (60-XX) 1 Numerical analysis (65-XX) 1 Systems theory; control (93-XX) Citations by Year