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limma

swMATH ID: 10458
Software Authors: Ritchie, M. E.; Phipson, B.; Wu, D.; Hu, Y.; Law, C. W.; Shi, W.; Smyth, G. K.
Description: limma: Linear Models for Microarray Data. A survey is given of differential expression analyses using the linear modeling features of the limma package. The chapter starts with the simplest replicated designs and progresses through experiments with two or more groups, direct designs, factorial designs and time course experiments. Experiments with technical as well as biological replication are considered. Empirical Bayes test statistics are explained. The use of quality weights, adaptive background correction and control spots in conjunction with linear modelling is illustrated on the β7 data.
Homepage: http://bioconductor.org/packages/release/bioc/html/limma.html
Related Software: Bioconductor; gcrma; R; edgeR; Voom; DESeq2; DEseq; sma; lemma; GlobalAncova; affy; locfdr; csaw; STRING; TopHat; DAVID; BaySeq; RGtk2; rattle; GGobi
Cited in: 63 Documents
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Cited by 191 Authors

3 Bar, Haim Y.
3 Schifano, Elizabeth D.
2 Kalina, Jan
2 Nettleton, Dan
2 Smyth, Gordon K.
2 Zhao, Sihai Dave
1 Alexander, Warren S.
1 Andreassen, Bettina K.
1 Angelini, Claudia
1 Bailey, Trevor C.
1 Barton, Samuel
1 Bhattacharjee, Atanu
1 Biscarri, William
1 Bischl, Bernd
1 Blocker, Alexander W.
1 Bommert, Andrea
1 Booth, James G.
1 Broad, Zoe
1 Brock, Guy N.
1 Burzykowski, Tomasz
1 Camilier, Isabelle
1 Castelletti, Federico
1 Chen, Jie
1 Chen, Jinggui
1 Cheng, Ruihua
1 Chervoneva, Inna
1 Chiogna, Monica
1 Choi, Dongseok
1 Christensen, Brock C.
1 Craven, Mark
1 Crowell, Helena L.
1 Dasgupta, Nairanjana
1 De Canditiis, Daniela
1 De Vito, Roberta
1 Di, Yanming
1 Djordjilović, Vera
1 Domingo-Relloso, Arce
1 Donovan, Diane M.
1 Drăghici, Sorin
1 Du, Chunyan
1 Dunning, Mark J.
1 Evangelista, Daniela
1 Felici, Giovanni
1 Ferkingstad, Egil
1 Frost, H. Robert
1 Gardner-Lubbe, Sugnet
1 Gasch, Audrey
1 Ge, Peng
1 Genz, Alan C.
1 Gharaibeh, Raad Z.
1 Grabski, Isabella N.
1 Graf, Alexandra C.
1 Guarracino, Mario Rosario
1 Guo, Zhitang
1 Harbo, Hanne F.
1 Ho, Yi-Hsuan
1 Hoen, Anne G.
1 Holmes, Susan P.
1 Hossain, Ahmed
1 Hu, Jianhua
1 Hu, Zongliang
1 Huang, Guo-Bao
1 Huang, Ping
1 Hutson, Alan David
1 Iglewicz, Boris
1 Janáček, Patrik
1 Jang, Woncheol
1 Jauhari, Shaurya
1 Jeganathan, Pratheepa
1 Jeong, Seok-Oh
1 Jeske, Daniel R.
1 Ji, Jiayi
1 Jiang, Duo
1 Jobin, Christian
1 Johnson, Marla
1 Juul, Malene
1 Karagas, Margaret R.
1 Ke, Yang
1 Khan, Hafiz Tareq Abdullah
1 Kiihl, Samara F.
1 Kim, Jane H.
1 Klawonn, Frank
1 Kong, Yan
1 Krzanowski, Wojtek Janusz
1 Lang, Michel
1 Langaas, Mette
1 Lazar, Nicole A.
1 le Roux, Niël J.
1 Lee, Stanley
1 Lefevre, James G.
1 Li, Gaorong
1 Li, Hongzhe
1 Li, Wenxing
1 Li, Zhigang
1 Liang, Jane W.
1 Lindqvist, Bo Henry
1 Lithio, Andrew
1 Liu, Haibo
1 Liu, Huaping
1 Liu, Xiumin
...and 91 more Authors

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