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TMB-Hunt

swMATH ID: 11342
Software Authors: Garrow, A. G.; Agnew, A.; Westhead, D. R.
Description: TMB-Hunt: a web server to screen sequence sets for transmembrane β-barrel proteins. TMB-Hunt is a program that uses a modified k-nearest neighbour (k-NN) algorithm to classify protein sequences as transmembrane β-barrel (TMB) or non-TMB on the basis of whole sequence amino acid composition. By including differentially weighted amino acids, evolutionary information and by calibrating the scoring, a discrimination accuracy of 92.5
Homepage: http://nar.oxfordjournals.org/content/33/suppl_2/W188.short
Related Software: BLAST; PSI-BLAST; PROFtmb; BOMP; Psortb; PRED-TMBB; LOCSVMPSI; GNBSL; Gpos-PLoc; Hum-PLoc; Hum-mPLoc; Euk-mPLoc; Virus-ploc; Euk-PLoc; Memtype-2L
Referenced in: 3 Publications

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