Elastix swMATH ID: 11747 Software Authors: Klein, S.; Staring, M.; Murphy, K.; Viergever, M. A.; Pluim, J. P. Description: elastix: A Toolbox for Intensity-Based Medical Image Registration. Medical image registration is an important task in medical image processing. It refers to the process of aligning data sets, possibly from different modalities (e.g., magnetic resonance and computed tomography), different time points (e.g., follow-up scans), and/or different subjects (in case of population studies). A large number of methods for image registration are described in the literature. Unfortunately, there is not one method that works for all applications. We have therefore developed elastix, a publicly available computer program for intensity-based medical image registration. The software consists of a collection of algorithms that are commonly used to solve medical image registration problems. The modular design of elastix allows the user to quickly configure, test, and compare different registration methods for a specific application. The command-line interface enables automated processing of large numbers of data sets, by means of scripting. The usage of elastix for comparing different registration methods is illustrated with three example experiments, in which individual components of the registration method are varied Homepage: https://elastix.lumc.nl Source Code: https://github.com/SuperElastix/elastix Related Software: Python; ITK; FAIR.m; SimpleITK; TensorFlow; NiftyNet; UNet++; U-Net; FreeSurfer; MONAI; Matlab; NumPy; RASL; FSL; LogSymmetricDemons; iLogDemons; GitHub; VoxelMorph; Quicksilver; CNTK Cited in: 16 Documents all top 5 Cited by 59 Authors 2 Biros, George 2 Lüthi, Marcel 2 Mang, Andreas 2 Vetter, Thomas 1 Albrecht, Thomas 1 Alderliesten, Tanja 1 Bosman, Peter A. N. 1 Bouix, Sylvain 1 Cates, Joshua 1 Cremers, Daniel 1 Darkner, Sune 1 Davatzikos, Christos 1 Dölz, Jürgen 1 Eberhardt, Benjamin 1 Gao, Yi 1 Gerig, Thomas 1 Gholami, Amir 1 Golkov, Vladimir 1 Haase, Roland 1 Habigt, Tim 1 Hao, Rui 1 Harbrecht, Helmut 1 Hawe, Simon 1 Heldmann, Stefan 1 Jensen, Henrik G. 1 Jones, Derek K. 1 Jud, Christoph 1 Kiechle, Martin 1 Kleinsteuber, Martin 1 Lam, Ka Chun 1 Lange, Kenneth L. 1 Lauze, François 1 Lee, Yin Tat 1 Lellmann, Jan 1 Li, Yufei 1 Lipp, Ilona 1 Liu, Peng 1 Lüdemann, Lutz 1 Lui, Lok Ming 1 MacLeod, Rob S. 1 Meissner, Marc 1 Peyrin, Françoise 1 Pirpinia, Kleopatra 1 Platero, Carlos 1 Qiang, Yan 1 Ricke, Jens 1 Schönborn, Sandro 1 Sgarlata, Eleonora 1 Sixou, Bruno 1 Sonke, Jan-Jakob 1 Tannenbaum, Allen Robert 1 Tobar, M. Carmen 1 Tomassini, Valentina 1 Tward, Daniel J. 1 van Herk, Marcel 1 Wybranski, Christian 1 Yan, Xiaofei 1 Zhou, Gaiting 1 Zhu, Liangjia all top 5 Cited in 7 Serials 5 Journal of Mathematical Imaging and Vision 3 Computational & Mathematical Methods in Medicine 3 SIAM Journal on Imaging Sciences 1 Journal of Scientific Computing 1 SIAM Journal on Scientific Computing 1 International Journal of Computer Vision 1 Algorithms all top 5 Cited in 10 Fields 8 Biology and other natural sciences (92-XX) 8 Information and communication theory, circuits (94-XX) 7 Computer science (68-XX) 5 Numerical analysis (65-XX) 2 Calculus of variations and optimal control; optimization (49-XX) 1 Functions of a complex variable (30-XX) 1 Partial differential equations (35-XX) 1 Statistics (62-XX) 1 Fluid mechanics (76-XX) 1 Operations research, mathematical programming (90-XX) Citations by Year