seqCBS swMATH ID: 12152 Software Authors: Jeremy J. Shen, Nancy R. Zhang Description: seqCBS: CN Profiling using Sequencing and CBS. This is a method for DNA Copy Number Profiling using Next-Generation Sequencing. It has new model and test statistics based on non-homogeneous Poisson Processes with change point models. It uses an adaptation of Circular Binary Segmentation. Also included are methods for point-wise Bayesian Confidence Interval and model selection method for the change-point model. A case and a control sample reads (normal and tumor) are required. Homepage: http://cran.r-project.org/web/packages/seqCBS/index.html Source Code: https://github.com/cran/seqCBS Dependencies: R Related Software: glmnet; SemiPar; Pindel; Delly; unbalhaar; CNV-seq; clue Cited in: 6 Publications all top 5 Cited by 14 Authors 2 Zhang, Nancy Ruonan 1 Banerjee, Moulinath 1 Kashyap, Vinay L. 1 Kosorok, Michael R. 1 Kroll, Martin H. 1 Lee, Thomas C. M. 1 Shen, Jeremy J. 1 Siegmund, David O. 1 Song, Rui 1 van Dyk, David A. 1 Wong, Raymond K. W. 1 Wu, Tung-Lung 1 Xia, Lichao 1 Yakir, Benjamin Cited in 4 Serials 3 The Annals of Applied Statistics 1 Metrika 1 The Annals of Statistics 1 Journal of Statistical Planning and Inference Cited in 4 Fields 5 Statistics (62-XX) 2 Probability theory and stochastic processes (60-XX) 2 Biology and other natural sciences (92-XX) 1 Astronomy and astrophysics (85-XX) Citations by Year