swMATH ID: 12152
Software Authors: Jeremy J. Shen, Nancy R. Zhang
Description: seqCBS: CN Profiling using Sequencing and CBS. This is a method for DNA Copy Number Profiling using Next-Generation Sequencing. It has new model and test statistics based on non-homogeneous Poisson Processes with change point models. It uses an adaptation of Circular Binary Segmentation. Also included are methods for point-wise Bayesian Confidence Interval and model selection method for the change-point model. A case and a control sample reads (normal and tumor) are required.
Homepage: http://cran.r-project.org/web/packages/seqCBS/index.html
Source Code:  https://github.com/cran/seqCBS
Dependencies: R
Related Software: glmnet; SemiPar; Pindel; Delly; unbalhaar; CNV-seq; clue
Cited in: 6 Publications

Citations by Year