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COPASI

swMATH ID: 12253
Software Authors: S. Hoops, S. Sahle, R. Gauges, C. Lee, J. Pahle, N. Simus, M. Singhal, L. Xu, P. Mendes, U. Kummer
Description: COPASI: biochemical network simulator. COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie’s stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI carries out several analyses of the network and its dynamics and has extensive support for parameter estimation and optimization. COPASI provides means to visualize data in customizable plots, histograms and animations of network diagrams. (list of features).
Homepage: https://academic.oup.com/bioinformatics/article/22/24/3067/208398
Related Software: BioModels; R; BioNetGen; KEGG; SUNDIALS; Python; Matlab; Data2Dynamics; BioGRID; Bio-PEPA; Bio-SPICE; Celldesigner; tellurium; PEtab; libSBML; WGCNA; AMIGO; CellML; MEIGO; PyBioNetFit
Referenced in: 58 Publications
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Referenced by 135 Authors

3 Sveshnikova, Anastasia N.
2 Banga, Julio R.
2 Cucinotta, Francis A.
2 Hinze, Thomas
2 Hsu, David Y.
2 Li, Yongfeng
2 Marchetti, Luca
2 Mizera, Andrzej
2 Petre, Ion
2 Priami, Corrado
2 Sanguinetti, Guido
2 Thiagarajan, Pazhamaneri Subramaniam
1 Abbruzzo, Antonino
1 Aguilera, Luis U.
1 Allart, Emilie
1 Alvarez, Robinson F.
1 Augugliaro, Luigi
1 Bacic, Antony
1 Back, Ralph-Johan
1 Balabin, Fedor A.
1 Ballarini, Paolo
1 Banks, C. J.
1 Bannink, Andre
1 Barbuto, José A. M.
1 Bassaganya-Riera, Josep
1 Bridge, Lloyd J.
1 Calder, Muffy
1 Cantrell, Doreen A.
1 Cao, Yang
1 Carra, Claudio
1 Castiglione, Filippo
1 Chelushkin, M.
1 Chen, Ming
1 Chen, Minghan
1 Ciocchetta, Federica
1 Clayton, Richard H.
1 Daas, Johanna C. J.
1 Degasperi, Andrea
1 Delgado, Alberto Santos
1 Dell’Acqua, Guido
1 Dimitrov, Stanko
1 Doyle, Francis Joseph III
1 Eftimie, Raluca
1 Eubank, Stephen G.
1 Förster, Jonas D.
1 Fröhlich, Holger
1 Gábor, Attila
1 Galochkina, Tatiana
1 Gambin, Barbara
1 Gilbert, David
1 Gillard, Joseph J.
1 Goussis, Dimitris A.
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1 Grigor’ev, Dmitriĭ Yur’evich
1 Grima, Ramon
1 Gutierrez, Juan B.
1 Hangos, Katalin Mária
1 Hariharaputran, Sridhar
1 Hasenauer, Jan
1 Heath, Allison P.
1 Heiner, Monika
1 Hillston, Jane
1 Hofestädt, Ralf
1 Hontecillas, Raquel
1 Houston, Matthew T.
1 Huynh-Thu, Vân Anh
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1 Ironi, Liliana
1 Jack, John
1 Kasabov, Nikola K.
1 Kavraki, Lydia E.
1 Kell, Douglas B.
1 Kircheis, Robert
1 Koh, Geoffrey
1 Kormeier, Benjamin
1 Kos, Martin
1 Kourdis, Panayotis D.
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1 Likić, Vladimir A.
1 Lithgow, Trevor
1 Liu, Bing
1 Lombardo, Rosario
1 Mardare, Radu
1 Markov, Svetoslav Marinovich
1 Mcconville, Malcolm J.
1 Mura, Ivan
1 Niehren, Joachim
1 Pahle, Jürgen
1 Panteleev, Mikhail A.
1 Păun, Andrei
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1 Radulescu, Ovidiu
1 Rebel, J. M. J.
1 Revell, Jeremy
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1 Rodriguez Gonzalez, Jesus G.
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