×

BEAST

swMATH ID: 12588
Software Authors: Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C-H., Xie, D., Suchard, MA., Rambaut, A., Drummond, A. J.
Description: BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. It estimates rooted, time-measured phylogenies using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST 2 uses Markov chain Monte Carlo (MCMC) to average over tree space, so that each tree is weighted proportional to its posterior probability. BEAST 2 includes a graphical user-interface for setting up standard analyses and a suit of programs for analysing the results.
Homepage: http://beast2.org/
Related Software: MrBayes; BEAUti; RAxML; fastDNAml; R; MEGA; ASTRAL-II; ape; PhyML; FastTree; PAUP*; MUSCLE; LAMARC; PhyloNet; Bali-phy; BEAGLE; Quartets MaxCut; Seq-Gen; NUTS; CODA
Cited in: 59 Publications

Standard Articles

1 Publication describing the Software, including 1 Publication in zbMATH Year
Bayesian evolutionary analysis with BEAST. Zbl 1321.92022
Drummond, Alexei J.; Bouckaert, Remco R.
2015
all top 5

Cited by 122 Authors

6 Palacios, Julia A.
4 Suchard, Marc A.
3 Cappello, Lorenzo
3 Drummond, Alexei J.
3 Gavryushkin, Alex
3 Kubatko, Laura Salter
3 Spade, David A.
3 Stadler, Tanja
2 Bhattacharya, Tanmoy
2 Bouckaert, Remco R.
2 Collienne, Lena
2 Fischer, Mareike
2 Gardner, Lauren M.
2 Giorgi, Elena Edi
2 Jones, Graham A.
2 Korber, Bette T.
2 Lemey, Philippe
2 Leviyang, Sivan
2 Matsen, Frederick A. IV
2 Perelson, Alan S.
2 Richards, Andrew
2 Warnow, Tandy J.
2 Whidden, Chris
2 Willis, Amy D.
1 Anisimova, Maria
1 Athreya, Gayathri S.
1 Ayabina, Diepreye
1 Babkin, Sergii
1 Baele, Guy
1 Bartoszek, Krzysztof
1 Bastide, Paul
1 Bedford, Trevor
1 Bell, Rayna
1 Bhaskar, Anand
1 Bomiriya, Rashmi P.
1 Bordewich, Magnus
1 Borges, Rui
1 Bryant, David
1 Bunge, John
1 Busch, Michael P.
1 Cazelles, Bernard
1 Chen, Guang-Wu
1 Chen, Minghui
1 Colijn, Caroline
1 Crespo, Fausto F.
1 Culliford, Richard
1 Cybis, Gabriela Bettella
1 Del Moral, Pierre
1 Delwart, Eric L.
1 Disanto, Filippo
1 Elmes, Kieran
1 Everitt, Richard Geoffrey
1 Fajardo, David
1 Ferreira, Marco A. R.
1 Francis, Andrew R.
1 Franck, Christopher T.
1 Gaschen, Brian
1 Gavryushkina, Aleksandra Anatol’evna
1 Goepfert, Paul A.
1 Gong, Yu-Nong
1 Grindstaff, Gillian Roxanne
1 Guindon, Stéphane
1 Guo, Hongbin
1 Hahn, Beatrice H.
1 Heath, Tracy A.
1 Herbei, Radu
1 Ho, Lam Si Tung
1 Höhna, Sebastian
1 Horton, Mitchel D.
1 Jarvis, Peter D.
1 Johndrow, James E.
1 Kaehler, Benjamin D.
1 Keefe, Matthew J.
1 Keele, Brandon F.
1 Kendall, Michelle
1 Kessler, David A.
1 Kim, Jaehee H.
1 Kimmel, Marek
1 Kosiol, Carolin
1 Kuo, Lynn
1 Lee, Ha Youn
1 Lewis, Paul O.
1 Linz, Simone
1 Liu, Sifan
1 Lopez, M. Graham
1 Maruvka, Yosef E.
1 Mather, Alison E.
1 Medina-Aguayo, Felipe J.
1 Michael Kilby, J.
1 Minin, Vladimir N.
1 Nakhleh, Luay
1 Neuwald, Andrew F.
1 Nguyen-Van-Yen, Benjamin
1 Ogilvie, Huw A.
1 Ostash, Bohdan
1 Owen, Megan
1 Pham, Kimmy T.
1 Posada, David
1 Rey, David
1 Rosenberg, Noah A.
...and 22 more Authors

Citations by Year