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Mfold

swMATH ID: 12672
Software Authors: Zuker, M.
Description: Mfold web server for nucleic acid folding and hybridization prediction. The abbreviated name, ‘mfold web server’, describes a number of closely related software applications available on the World Wide Web (WWW) for the prediction of the secondary structure of single stranded nucleic acids. The objective of this web server is to provide easy access to RNA and DNA folding and hybridization software to the scientific community at large. By making use of universally available web GUIs (Graphical User Interfaces), the server circumvents the problem of portability of this software. Detailed output, in the form of structure plots with or without reliability information, single strand frequency plots and ‘energy dot plots’, are available for the folding of single sequences. A variety of ‘bulk’ servers give less information, but in a shorter time and for up to hundreds of sequences at once. The portal for the mfold web server is http://www.bioinfo.rpi.edu/applications/mfold. This URL will be referred to as ‘MFOLDROOT’.
Homepage: http://nar.oxfordjournals.org/content/31/13/3406
Related Software: Sfold; KineFold; RNAshapes; Pfold; UNAFold; tRNAscan-SE; jViz.Rna; ViennaRNA; CONTRAfold; Rfam; DINAMelt; RNAmute; miRBase; RNAplex; IPknot; Galaxy; VARNA; ClustalW; RNAKinetics; RSEARCH
Referenced in: 38 Publications
Further Publications: http://mfold.rit.albany.edu/?q=mfold/mfold-references
all top 5

Referenced by 96 Authors

6 Clote, Peter G.
3 Heitsch, Christine E.
3 Seligmann, Hervé
2 Backofen, Rolf
2 Han, Yo-Sub
2 Kim, Hwee
2 Kranakis, Evangelos Konstantinou
2 Krizanc, Danny
2 Tsur, Dekel
2 Zakov, Shay
2 Ziv-Ukelson, Michal
1 Akutsu, Tatsuya
1 Anderson, Todd A.
1 Baev, Vesselin
1 Bakhtin, Yuri Yu.
1 Barash, Danny
1 Barrera-Cruz, Fidel
1 Bellofatto, Vivian
1 Benerjee, Krishna Gopal
1 Bundschuh, Ralf
1 Cao, Huai
1 Chan, Chi Yu
1 Churkin, Alexander
1 Cobb, George P.
1 Daskalova, Evelina
1 Deb, Sourav
1 del Portillo, Hernando A.
1 Deng, Zhidong
1 Ding, Ye
1 Dobrev, Stefan
1 Dotú, Iván
1 Durham, Alan Mitchell
1 Eslahchi, Changiz
1 Fang, Li Tai
1 Fusy, Éric
1 Gabdank, Idan
1 Gong, Xi
1 Goodarzi, Hani
1 Guillen, Nancy
1 Guo, Ai-Guang
1 Gupta, Manish Kumar
1 Hower, Valerie
1 Jarstfer, Michael
1 Jeffries, Clark D.
1 Jin, Emma Yu
1 Jin, Wei-Bo
1 Kato, Yuki
1 Khaladkar, Mugdha
1 Kong, Dong
1 Krishnan, Neeraja M.
1 Li, Siguang
1 Li, Wei
1 Liu, Ciquan
1 López-Camarillo, César
1 Luo, Yuping
1 Machado-Lima, Ariane
1 Malmberg, Russell L.
1 Manzourolajdad, Amirhossein
1 Marashi, Sayed-Amir
1 Marchat, Laurence A.
1 Minkov, Ivan
1 Mosig, Axel
1 Nebel, Markus E.
1 Orozco, Esther
1 Ota, Makoto
1 Pan, Xiaoping
1 Patel, Vandanaben
1 Perkins, Diana O.
1 Pezeshk, Hamid
1 Picardi, Ernesto
1 Ponty, Yann
1 Poznanović, Svetlana
1 Prohaska, Sonja J.
1 Rao, Basuthkar J.
1 Sadeghi, Mehdi
1 Seki, Hiroyuki
1 Seki, Shinnosuke
1 Shaw, Timothy I.
1 Song, Dandan
1 Stadler, Peter F.
1 Steyaert, Jean-Marc
1 Straubhaar, Jürg
1 Taneda, Akito
1 Urrutia Galicia, Jorge L.
1 Wang, Jason Tsong Li
1 Wang, Kan
1 Wang, Qinglian
1 Wang, Yingfeng
1 Wilusz, Jeffrey
1 Wu, Fang-Li
1 Xie, Huazhen
1 Zamorano, Absalom
1 Zeng, Wenhong
1 Zhang, Baohong
1 Zhang, Wen
1 Zhang, Wenwei

Referencing Publications by Year