Metatool swMATH ID: 13278 Software Authors: von Kamp A, Schuster S Description: Metatool 5.0: fast and flexible elementary modes analysis. Summary: Elementary modes analysis is a powerful tool in the constraint-based modeling of metabolic networks. In recent years, new approaches to calculating elementary modes in biochemical reaction networks have been developed. As a consequence, the program Metatool, which is one of the first programs dedicated to this purpose, has been reimplemented in order to make use of these new approaches. The performance of Metatool has been significantly increased and the new version 5.0 can now be run inside the GNU octave or Matlab environments to allow more flexible usage and integration with other tools. Homepage: http://pinguin.biologie.uni-jena.de/bioinformatik/networks/index.html Related Software: efmtool; KEGG; YANA; BioModels; EFMEvolver; FFCA; F2c2; BiGG; Celldesigner; ScrumPy; polco; MEMo; cdd; MTT; Octave; Docker; AlgoRun; Macaulay2; Petriweb; CLPGUI Cited in: 22 Publications all top 5 Cited by 56 Authors 5 Bockmayr, Alexander 2 Chotteau, Véronique 2 Forsgren, Anders 2 Hagrot, Erika 2 Morán, Federico 2 Oddsdóttir, Hildur Æsa 2 Olasagasti, Felix 2 Schuster, Stefan 2 Srienc, Friedrich 2 von Kamp, Axel 1 Behre, Jörn 1 Boley, Daniel L. 1 Bortfeldt, R. 1 Crampin, Edmund John 1 David, Laszlo 1 Errami, Hassan 1 Fages, François 1 Fell, David A. 1 Gainer-Dewar, Andrew 1 Gawthrop, Peter J. 1 Goldstein, Yaron 1 Hädicke, Oliver 1 Jevremović, Dimitrije 1 Kielbassa, J. 1 Klamt, Steffen 1 Larhlimi, Abdelhalim 1 Llaneras, F. 1 Marashi, Sayed-Amir 1 Martinez, Thierry 1 Mazat, Jean-Pierre 1 Meléndez-Hevia, Enrique 1 Montero, Francisco 1 Moreno, Alvaro 1 Müller, Arne C. 1 Nabli, Faten 1 Nazaret, Christine 1 Nikoloski, Zoran 1 Nuño, Juan Carlos 1 Peretó, Juli G. 1 Picó, Jesús 1 Pidcock, Michael K. 1 Poolman, Mark G. 1 Reimers, Arne C. 1 Röhl, Annika 1 Ruppin, Eytan 1 Sajitz-Hermstein, Max 1 Samal, Satya Swarup 1 Sebu, Cristiana 1 Soliman, Sylvain 1 Sosa, Carlos P. 1 Trinh, Cong T. 1 Unrean, Pornkamol 1 Vázquez, Sara 1 Vera-Licona, Paola 1 Weber, Andreas Günter 1 Wilhelm, Thomas all top 5 Cited in 11 Serials 7 Journal of Theoretical Biology 3 Journal of Mathematical Biology 2 Mathematical Biosciences 1 Discrete Applied Mathematics 1 Bulletin of Mathematical Biology 1 Parallel Computing 1 SIAM Journal on Discrete Mathematics 1 Constraints 1 Entropy 1 Computational Biology and Chemistry 1 Proceedings of the Royal Society of London. A. Mathematical, Physical and Engineering Sciences all top 5 Cited in 7 Fields 21 Biology and other natural sciences (92-XX) 4 Combinatorics (05-XX) 3 Operations research, mathematical programming (90-XX) 2 Computer science (68-XX) 1 Numerical analysis (65-XX) 1 Statistical mechanics, structure of matter (82-XX) 1 Game theory, economics, finance, and other social and behavioral sciences (91-XX) Citations by Year