BioModels swMATH ID: 13610 Software Authors: Le Novere, Nicolas; Bornstein, Benjamin; Broicher, Alexander; Courtot, Mélanie; Donizelli, Marco; Dharuri, Harish; Li, Lu; Sauro, Herbert; Schilstra, Maria; Shapiro, Bruce; Snoep, Jacky L.; Hucka, Michael Description: BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. BioModels Database (http://www.ebi.ac.uk/biomodels/), part of the international initiative BioModels.net, provides access to published, peer-reviewed, quantitative models of biochemical and cellular systems. Each model is carefully curated to verify that it corresponds to the reference publication and gives the proper numerical results. Curators also annotate the components of the models with terms from controlled vocabularies and links to other relevant data resources. This allows the users to search accurately for the models they need. The models can currently be retrieved in the SBML format, and import/export facilities are being developed to extend the spectrum of formats supported by the resource. Homepage: http://www.ebi.ac.uk/biomodels-main/ Related Software: COPASI; BIOCHAM; KEGG; REDLOG; libSBML; Celldesigner; Bio-PEPA; QEPCAD; z3; MESSI; MetaCyc; PoCaB; SUNDIALS; GitHub; PEPA; Ginsim; Metatool; ERODE; polymake; PRISM Cited in: 79 Documents all top 5 Cited by 170 Authors 9 Sturm, Thomas 8 Grigor’ev, Dmitriĭ Yur’evich 8 Weber, Andreas Günter 7 Fages, François 7 Radulescu, Ovidiu 5 Errami, Hassan 4 Johnston, Matthew D. 4 Rahkooy, Hamid 3 Ciocchetta, Federica 3 England, Matthew 3 Hemery, Mathieu 3 Samal, Satya Swarup 3 Soliman, Sylvain 3 Vaginay, Athénaïs 2 Bradford, Russell J. 2 Davenport, James Harold 2 Fröhlich, Holger 2 Gambin, Anna 2 Gerdt, Vladimir Petrovich 2 Hoyt, Charles Tapley 2 Iosif, Alexandru 2 Košta, Marek 2 Lüders, Christoph 2 Maggiolo-Schettini, Andrea 2 Milazzo, Paolo 2 Niehren, Joachim 2 Pan, Michael 2 Pardini, Giovanni 2 Pastva, Samuel 2 Pogudin, Gleb A. 2 Rao, Shodhan 2 Rybiński, Mikołaj 2 Tribastone, Mirco 2 Vandin, Andrea 1 Antoniotti, Marco 1 Apiyo, D. 1 Argyris, Georgios 1 Bacic, Antony 1 Bakker, Barbara M. 1 Baldan, Paolo 1 Barrack, Duncan S. 1 Baudier, Adrien 1 Bauer, Stefan Alois 1 Beneš, Nikola 1 Binsl, Thomas W. 1 Bockmayr, Alexander 1 Boukhobza, Taha 1 Bowsher, Clive G. 1 Boys, Richard J. 1 Brehm, Bernhard 1 Brim, Luboš 1 Burton, Evan 1 Chen, Changbo 1 Cocco, Nicoletta 1 Conradie, Riaan 1 Craciun, Gheorghe 1 Crampin, Edmund John 1 Daas, Johanna C. J. 1 Demitraki, Elizaveta 1 Desoeuvres, Aurélien 1 Donnell, Pete 1 du Preez, F. B. 1 Dudziuk, Grzegorz 1 Eiswirth, Markus 1 Erickson, Keesha E. 1 Ewald, Roland 1 Feng, Song 1 Fiedler, Bernold 1 Fisher, H. F. 1 Förster, Jonas D. 1 Gasparyan, Manvel 1 Gawthrop, Peter J. 1 Gay, Steven 1 Gillespie, Colin S. 1 Golightly, Andrew 1 Gonçalves, Bernardo 1 Goussis, Dimitris A. 1 Graudenzi, Alex 1 Guerriero, Maria Luisa 1 Hauschild, Anne-Christin 1 Heath, Allison P. 1 Heinle, Albert 1 Hettling, Hannes 1 Hillston, Jane 1 Hinze, Thomas 1 Hlavacek, William S. 1 Hsu, David Y. 1 Ioannidis, John P. A. 1 Jacob, Joshua Paul 1 Jayawardhana, Bayu 1 Jiménez-Pastor, Antonio 1 Ju, Wenwen 1 Katsoulakis, Markos A. 1 Kavraki, Lydia E. 1 Kell, Douglas B. 1 Koeppl, Heinz 1 Kourdis, Panayotis D. 1 Kruff, Niclas 1 Landmane, Katrina 1 Lang, Moritz ...and 70 more Authors all top 5 Cited in 27 Serials 9 Journal of Theoretical Biology 7 Mathematical Biosciences 6 Theoretical Computer Science 5 Bulletin of Mathematical Biology 4 Journal of Mathematical Biology 2 Journal of Computational Physics 2 Journal of Symbolic Computation 2 Natural Computing 2 SIAM Journal on Applied Dynamical Systems 2 Mathematics in Computer Science 1 Artificial Intelligence 1 International Journal of Control 1 Mathematical Methods in the Applied Sciences 1 The Annals of Statistics 1 Biometrics 1 Studies in Applied Mathematics 1 Proceedings of the National Academy of Sciences of the United States of America 1 SIAM Journal on Scientific Computing 1 ACM Transactions on Modeling and Computer Simulation 1 Constraints 1 Journal of Mathematical Chemistry 1 Philosophical Transactions of the Royal Society of London. Series A. Mathematical, Physical and Engineering Sciences 1 Communications in Nonlinear Science and Numerical Simulation 1 ACM Communications in Computer Algebra 1 Statistics and Computing 1 Computer Science Review 1 Journal of Membrane Computing all top 5 Cited in 20 Fields 68 Biology and other natural sciences (92-XX) 20 Computer science (68-XX) 10 Ordinary differential equations (34-XX) 7 Dynamical systems and ergodic theory (37-XX) 6 Probability theory and stochastic processes (60-XX) 5 Combinatorics (05-XX) 5 Systems theory; control (93-XX) 4 Commutative algebra (13-XX) 4 Operations research, mathematical programming (90-XX) 3 Algebraic geometry (14-XX) 3 Statistics (62-XX) 3 Numerical analysis (65-XX) 3 Information and communication theory, circuits (94-XX) 2 Classical thermodynamics, heat transfer (80-XX) 1 History and biography (01-XX) 1 Associative rings and algebras (16-XX) 1 Real functions (26-XX) 1 Calculus of variations and optimal control; optimization (49-XX) 1 Mechanics of particles and systems (70-XX) 1 Statistical mechanics, structure of matter (82-XX) Citations by Year