BioNet swMATH ID: 13828 Software Authors: Beisser, D.; Klau, G. W.; Dandekar, T.; Mueller, T., Dittrich, M Description: The BioNet package provides an extensive framework for integrated network analysis using R and BioConductor. It includes the statistics for the integration of transcriptomic and functional data with biological networks, the methods for scoring of nodes, methods for optimal, suboptimal and fast heuristic searches, as well as routines for the visualization of the fitted model and resulting modules. Homepage: http://bionet.bioapps.biozentrum.uni-wuerzburg.de/ Dependencies: R Related Software: Bioconductor; gcrma; miRecords; STRING; TopHat; Cytoscape; igraph; edgeR; RedeR; STRINGdb; ANIMO; PRS; NET-SYNTHESIS; SMPDB; PathCellNet; GNAT; YEASTRACT; ATtRACT; COMPARTMENTS; PaxDb Cited in: 4 Publications all top 5 Cited by 11 Authors 1 Álvarez-Miranda, Eduardo 1 Delgado, Alberto Santos 1 Fröhlich, Holger 1 Kong, Yan 1 Liu, Huaping 1 Sinnl, Markus 1 Song, Wei 1 von Stechow, Louise 1 Wang, Jiajia 1 Yin, Xia 1 Zang, Weidong Cited in 4 Serials 1 Biometrical Journal 1 Computers & Operations Research 1 Journal of Theoretical Biology 1 Methods in Molecular Biology Cited in 4 Fields 3 Biology and other natural sciences (92-XX) 1 Statistics (62-XX) 1 Computer science (68-XX) 1 Operations research, mathematical programming (90-XX) Citations by Year