BiNGO swMATH ID: 13896 Software Authors: Maere S., Heymans K., Kuiper M. Description: BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Summary: The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used either on a list of genes, pasted as text, or interactively on subgraphs of biological networks visualized in Cytoscape. BiNGO maps the predominant functional themes of the tested gene set on the GO hierarchy, and takes advantage of Cytoscape’s versatile visualization environment to produce an intuitive and customizable visual representation of the results. Availability: http://www.psb.ugent.be/cbd/papers/BiNGO/ Homepage: http://bioinformatics.oxfordjournals.org/content/21/16/3448.short Dependencies: Cytoscape Related Software: KEGG; Cytoscape; GOstat; GOLEM; R; GOPET; BayGO; Gaggle; GOtcha; ProbCD; RegulonDB; UniProt; JASPAR; BioGRID; SIRENE; ARACNE; COPASI; TRANSFAC; CLENCH; GENECODIS Cited in: 8 Publications all top 5 Cited by 23 Authors 1 Álvarez-Miranda, Eduardo 1 Farhan, Hesso 1 Ferro, Alfredo 1 Giugno, Rosalba 1 Golden, Bruce L. 1 Gruca, Aleksandra 1 Huynh-Thu, Vân Anh 1 Jupiter, Daniel C. 1 Kasabov, Nikola K. 1 Luipersbeck, Martin 1 Lum, Oliver 1 Micale, Giovanni 1 Mongiovì, Misael 1 Pulvirenti, Alfredo 1 Ren, Xianwen 1 Şahutoğlu, Jessica 1 Sanguinetti, Guido 1 Shasha, Dennis E. 1 Sikora, Marek 1 Sinnl, Markus 1 Vanburen, Vincent 1 Wasil, Edward A. 1 Zhang, Xiangsun all top 5 Cited in 6 Serials 2 INFORMS Journal on Computing 1 Annals of Operations Research 1 Data Mining and Knowledge Discovery 1 International Journal of Applied Mathematics and Computer Science 1 Journal of Systems Science and Complexity 1 Methods in Molecular Biology all top 5 Cited in 7 Fields 6 Biology and other natural sciences (92-XX) 3 Operations research, mathematical programming (90-XX) 2 Statistics (62-XX) 2 Computer science (68-XX) 1 General and overarching topics; collections (00-XX) 1 Combinatorics (05-XX) 1 Numerical analysis (65-XX) Citations by Year