IMPUTE swMATH ID: 14375 Software Authors: J. Marchini, B. Howie, S. Myers, G. McVean, P. Donnelly Description: IMPUTE is a program for estimating (”imputing”) unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. There are currently three different versions of the IMPUTE software available for download: version 0.5 implements the methodology described in Marchini et al. (2007); version 1 is essentially the same as version 0.5, with a couple of added features; and version 2 implements a major extension that was introduced in Howie et al. (2009). Homepage: http://mathgen.stats.ox.ac.uk/impute/impute.html Related Software: Eigenstrat; PLINK; R; Forensically; SFAPS; chifish; MACOED; AntEpiSeeker; FAACOSE; eQTL epistasis; MEMSS; S-PLUS; hypred; ElemStatLearn; Matlab; HapSim; LogicReg; HapMix; MaCH; PennCNV Cited in: 10 Publications all top 5 Cited by 32 Authors 1 Aminafshar, Mehdi 1 Dai, James Y. 1 Ding, Hongfa 1 Emily, Mathieu 1 Falchi, Mario 1 Honarvar, Mahmood 1 Huang, Deshuang 1 Huang, Yen-Tsung 1 Kashan, Nasser Emam Jomeh 1 Kooperberg, Charles 1 LeBlanc, Michael L. 1 Li, Peng 1 Lin, Xihong 1 Mikhchi, Abbas 1 Paul, Joshua S. 1 Peng, Changgen 1 Rajapakse, Indika 1 Sacco, Chiara 1 Sampson, Joshua N. 1 Shi, Jianxin 1 Song, Yun S. 1 Steinrücken, Matthias 1 Stephens, Matthew 1 Tian, Youliang 1 VanderWeele, Tyler J. 1 Viroli, Cinzia 1 Wen, Xiaoquan 1 Wheeler, Bill 1 Xiang, Shuwen 1 Yuan, Changan 1 Yuan, Lin 1 Zhang, Youshan all top 5 Cited in 7 Serials 3 The Annals of Applied Statistics 2 Statistical Applications in Genetics and Molecular Biology 1 Information Sciences 1 Theoretical Population Biology 1 Statistical Science 1 Complexity 1 Journal of Theoretical Biology all top 5 Cited in 7 Fields 8 Biology and other natural sciences (92-XX) 7 Statistics (62-XX) 1 Probability theory and stochastic processes (60-XX) 1 Numerical analysis (65-XX) 1 Computer science (68-XX) 1 Operations research, mathematical programming (90-XX) 1 Systems theory; control (93-XX) Citations by Year