Samtools swMATH ID: 14583 Software Authors: Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R Description: Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: Samtools: Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format. BCFtools: Reading/writing BCF2/VCF/gVCF files and calling/filtering summarising SNP and short indel sequence variants. HTSlib: A C library for reading/writing high-throughput sequencing data. Samtools and BCFtools both use HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently. Homepage: http://www.htslib.org/ Related Software: BWA; Soap; GATK; R; VarScan; BLAT; MAFFT; Trimmomatic; FastQC; STAR; BEDTools; PAML; Bowtie 2; PatternHunter; Velvet; FASTX; UniProt; SnpEff; HTSeq; GOstat Cited in: 16 Publications all top 5 Cited by 44 Authors 1 Barturen, Guillermo 1 Benoit, Gaetan 1 Carugo, Oliviero 1 Chateau, Annie 1 Dallard, Clément 1 Drezen, Erwan 1 Eisenhaber, Frank 1 Giancarlo, Raffaele 1 Giroudeau, Rodolphe 1 Gulukota, Kamalakar 1 Hackenberg, Michael 1 Huang, Yimin 1 Jäger, Marten 1 Ji, Yuan 1 Keith, Jonathan M. 1 Lavenier, Dominique 1 Lawrence, Michael F. 1 Lee, Juhee 1 Lemaitre, Claire 1 Liu, Jiangbin 1 Liu, Yongchao 1 Lv, Zhibao 1 Morgan, Martin 1 Müller, Peter 1 Oliver, José L. 1 Piro, Rosario Michael 1 Policriti, Alberto 1 Rizk, Guillaume 1 Robinson, Peter N. 1 Scaturro, Davide 1 Schmidt, Bertil 1 Shomroni, Orr 1 Siragusa, Enrico 1 Tomescu, Alexandru Ioan 1 Utro, Filippo 1 Vezzi, Francesco 1 Wang, Wei 1 Weese, David 1 Wei, Zhi 1 Weller, Mathias 1 Wolff, Alexander 1 Wu, Wei 1 Xu, Weijue 1 Zhao, Zhigen all top 5 Cited in 7 Serials 2 The Annals of Applied Statistics 2 Methods in Molecular Biology 1 Journal of Computer and System Sciences 1 Statistical Science 1 Mathematical Biosciences and Engineering 1 Computer Science Review 1 Chapman & Hall/CRC Mathematical and Computational Biology Series all top 5 Cited in 6 Fields 14 Biology and other natural sciences (92-XX) 5 Computer science (68-XX) 4 Statistics (62-XX) 1 General and overarching topics; collections (00-XX) 1 Numerical analysis (65-XX) 1 Operations research, mathematical programming (90-XX) Citations by Year