Cellnoptr swMATH ID: 15114 Software Authors: Terfve, C. D. A.; Cokelaer, T.; Henriques, D.; Macnamara, A.; Gonçalves, E.; Morris, M.; Van Iersel, M.; Lauffenburger, D. A.; Saez-Rodriguez, J. Description: CellNOpt (from CellNetOptimizer; a.k.a. CNO) is a software used for creating logic-based models of signal transduction networks using different logic formalisms (Boolean, Fuzzy, or differential equations). CellNOpt uses information on signaling pathways encoded as a Prior Knowledge Network, and trains it against high-throughput biochemical data to create cell-specific models. CellNOpt is freely available under GPL license in R and Matlab languages. It can be also accessed through a python wrapper, and a Cytoscape plugin called CytoCopter provides a graphical user interface. CellNOpt is mainly developed at the Saez-Rodriguez group at the European Bioinformatics Institute (EBI). The project started at the groups of Peter Sorger (Harvard Medical School) and Doug Lauffenburger (M.I.T.). There is a group of CellNOpt developers at different locations. Homepage: http://www.cellnopt.org/ Related Software: R; BoolNet; Graphviz; CellNOpt; KEGG; Pint; BioLQM; PyBoolNet; usefun; MaBoSS; emba; PANET; CANA; Python; booleannet; jPar; AMIGO; Matlab; MEIGO; miRNet Cited in: 2 Publications Further Publications: http://www.cellnopt.org/literature.html all top 5 Cited by 11 Authors 1 Delgado, Alberto Santos 1 Eduati, Federica 1 Gebser, Martin 1 Guziolowski, Carito 1 Nicolas, Jacques 1 Saez-Rodriguez, Julio 1 Schaub, Torsten H. 1 Siegel, Anne 1 Thiele, Sven 1 Videla, Santiago 1 von Stechow, Louise Cited in 2 Serials 1 Theoretical Computer Science 1 Methods in Molecular Biology Cited in 2 Fields 2 Biology and other natural sciences (92-XX) 1 Computer science (68-XX) Citations by Year