EpiModel swMATH ID: 16142 Software Authors: Samuel Jenness, Steven M. Goodreau, Martina Morris, Emily Beylerian, Skye Bender-deMoll, Kevis Weiss Description: R package EpiModel. Tools for simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic agent-based models, and stochastic network models. Network models use the robust statistical methods of exponential-family random graph models (ERGMs) from the Statnet suite of software packages in R. Standard templates for epidemic modeling include SI, SIR, and SIS disease types. EpiModel features an easy API for extending these templates to address novel scientific research aims. Homepage: https://cran.r-project.org/web/packages/EpiModel/index.html Source Code: https://github.com/cran/EpiModel Dependencies: R Keywords: CRAN; R package; Epidemic model; Infectious Disease; ERGMs; Statnet Related Software: R; Python; SciPy; EoN; Surveillance; epinet; ergm; Graph-tool; epydemic; Stan; EpiEstim; amei; igraph; NumPy; SamplableSet; ChemPy; SymPy; epipack; R0; rstan Cited in: 6 Publications Standard Articles 1 Publication describing the Software Year all top 5 Cited by 20 Authors 1 Baker, Evan 1 Challenor, Peter G. 1 Da Silva, Adilson J. 1 Eames, Matthew E. 1 Fang, Xing 1 Fang, Zijian 1 Gonçalves, João N. C. 1 Hu, Taizhong 1 Kabanikhin, Sergeĭ Igorevich 1 Krivorotko, Olga I. 1 Monteiro, M. Teresa T. 1 Prikhodko, A. Yu. 1 Prokhoshin, N. M. 1 Rodrigues, Helena Sofia 1 Shishlenin, Maxim Aleksandrovich 1 Xu, Maochao 1 Xu, Shouhuai 1 Zeng, Pinhong 1 Zhao, Peng 1 Zyatkov, N. Yu. all top 5 Cited in 6 Serials 1 Sibirskiĭ Zhurnal Vychislitel’noĭ Matematiki 1 Discrete Dynamics in Nature and Society 1 Journal of Applied Statistics 1 Journal of Computational and Graphical Statistics 1 Discontinuity, Nonlinearity, and Complexity 1 Computational and Mathematical Biophysics Cited in 4 Fields 4 Biology and other natural sciences (92-XX) 3 Statistics (62-XX) 2 Ordinary differential equations (34-XX) 1 Dynamical systems and ergodic theory (37-XX) Citations by Year