TMB swMATH ID: 16279 Software Authors: Kasper Kristensen, Brad Bell, Hans Skaug, Arni Magnusson, Casper Berg, Anders Nielsen, Martin Maechler, Theo Michelot, Mollie Brooks, Cole Monnahan Description: R package TMB: Template Model Builder: A General Random Effect Tool Inspired by ’ADMB’. With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines CppAD (C++ automatic differentiation), Eigen (templated matrix-vector library) and CHOLMOD (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through BLAS and parallel user templates. Homepage: https://cran.r-project.org/web/packages/TMB/index.html Source Code: https://github.com/cran/TMB Dependencies: R Keywords: CRAN; R package; Template Model Builder; CppAD; CHOLMOD; Eigen Related Software: R; JAGS; Stan; lme4; WinBUGS; AD Model Builder; glmmTMB; GMRFLib; BayesDA; nimble; CppAD; Eigen; ADMB; CSparse; OpenBUGS; CHOLMOD; spBayes; BayesX; ADOL-C; NUTS Cited in: 26 Publications Standard Articles 1 Publication describing the Software Year all top 5 Cited by 57 Authors 2 Aeberhard, William H. 2 Cadigan, Noel 2 Glennie, Richard 2 Hui, Francis K. C. 2 Selland Kleppe, Tore 2 Mills Flemming, Joanna 2 Niku, Jenni 2 Taskinen, Sara 2 Zheng, Nan 1 Bell, Bradley M. 1 Benoît, Hugues 1 Boivin, Ariane 1 Brost, Brian M. 1 Cantoni, Eva 1 Chen, Cathy W. S. 1 Craiu, Radu V. 1 Cui, Yan 1 Dinsdale, Daniel 1 Duchesne, Thierry 1 Feng, Cindy Xin 1 Field, Chris M. 1 Flores-Agreda, Daniel 1 Genton, Marc G. 1 Haddon, Malcolm 1 Harris, Catriona 1 Helgøy, Ingvild M. 1 Herliansyah, Riki 1 Hooten, Mevin B. 1 Hothorn, Ludwig A. 1 Jeong, Jaehong 1 Johnson, Devin S. 1 King, Ruth 1 King, Stuart E. 1 Korhonen, Pekka J. 1 Kristensen, Kasper 1 Kruppa, Jochen 1 Lawler, Ethan 1 Li, Qi 1 Lin, Xiancheng 1 Menezes, Raquel 1 Michelot, Théo 1 Miller, David L. 1 Monteiro, Andreia 1 Rivest, Louis-Paul 1 Salibian-Barrera, Matias 1 Seaton, Andrew E. 1 Silva, Maria Eduarda 1 Skaug, Hans Julius 1 Smith, Stephen J. 1 Thomas, Len 1 Warton, David I. 1 Whoriskey, Kim 1 Wood, Simon N. 1 Xu, Xiaofei 1 Yan, Yuan 1 Yin, Yihao 1 Zhu, Fukang all top 5 Cited in 14 Serials 6 Journal of Agricultural, Biological, and Environmental Statistics 3 Computational Statistics and Data Analysis 2 Test 2 Journal of Applied Statistics 2 The Annals of Applied Statistics 2 Statistics and Computing 1 The Canadian Journal of Statistics 1 Annals of the Institute of Statistical Mathematics 1 Optimization Methods & Software 1 Journal of Statistical Theory and Practice 1 Journal of Computational and Graphical Statistics 1 Sankhyā. Series B 1 Japanese Journal of Statistics and Data Science 1 Chapman & Hall/CRC The R Series all top 5 Cited in 8 Fields 25 Statistics (62-XX) 3 Probability theory and stochastic processes (60-XX) 2 Numerical analysis (65-XX) 2 Game theory, economics, finance, and other social and behavioral sciences (91-XX) 1 Real functions (26-XX) 1 Calculus of variations and optimal control; optimization (49-XX) 1 Geophysics (86-XX) 1 Biology and other natural sciences (92-XX) Citations by Year