ShortRead swMATH ID: 16605 Software Authors: Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman Description: ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. Homepage: http://bioinformatics.oxfordjournals.org/content/25/19/2607.short Dependencies: R Related Software: Bioconductor; R; ggplot2; Rsamtools; TopHat; Trimmomatic; FastQC; Rqc; edgeR; knitr; shiny; BiocParallel; DEseq; HTSeq; profr; GridR; fork; proftools; Rlsf; PBLAS Cited in: 2 Publications Cited by 5 Authors 1 Akalin, Altuna 1 1 Gondro, Cedric 1 Ronen, Jonathan 1 Uyar, Bora Cited in 2 Serials 1 Use R! 1 Chapman & Hall/CRC Computational Biology Series Cited in 2 Fields 2 Biology and other natural sciences (92-XX) 1 Statistics (62-XX) Citations by Year