swMATH ID: 16605
Software Authors: Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman
Description: ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.
Homepage: http://bioinformatics.oxfordjournals.org/content/25/19/2607.short
Dependencies: R
Related Software: Bioconductor; R; ggplot2; Rsamtools; TopHat; Trimmomatic; FastQC; Rqc; edgeR; knitr; shiny; BiocParallel; DEseq; HTSeq; profr; GridR; fork; proftools; Rlsf; PBLAS
Cited in: 2 Publications

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