PISCES swMATH ID: 16873 Software Authors: Guoli Wang, Roland L. Dunbrack Jr Description: PISCES: a protein sequence culling server. Summary: PISCES is a public server for culling sets of protein sequences from the Protein Data Bank (PDB) by sequence identity and structural quality criteria. PISCES can provide lists culled from the entire PDB or from lists of PDB entries or chains provided by the user. The sequence identities are obtained from PSI-BLAST alignments with position-specific substitution matrices derived from the non-redundant protein sequence database. PISCES therefore provides better lists than servers that use BLAST, which is unable to identify many relationships below 40 Homepage: http://bioinformatics.oxfordjournals.org/content/19/12/1589.short Related Software: LIBSVM; BLAST; PSI-BLAST; iLoc-Euk; Cell-PLoc; UniProt; AFP-Pred; Python; LIGPLOT; SMOTE; wxPython; WEKA; LIBLINEAR; R; PyMOL; Hum-PLoc; SVMlight; MIND-BEST; FUGUE; pLoc-mVirus Cited in: 24 Publications all top 5 Cited by 63 Authors 4 Munteanu, Cristian Robert 3 Cai, Yudong 3 Li, Qianzhong 3 Xu, Wenbo 2 Chen, Yingli 2 Dorado, Julian 2 Fernandez-Lozano, Carlos 2 González Díaz, Humberto 2 Li, Yixue 2 Pazos, Alejandro 2 Ruan, Jishou 2 Zhang, Ning 1 Behrouzi, Reza 1 Borges, Fernanda 1 Cai, Yujie 1 Camacho, Rui 1 Cao, Jianping 1 Carugo, Oliviero 1 Chou, Kuochen 1 Cuiñas, Rubén F. 1 de Magalhães, Alexandre Lopes 1 de Sousa, Miguel M. 1 Ding, Yanrui 1 Duan, Guangyou 1 Eisenhaber, Frank 1 Fernández-Blanco, Enrique 1 Fonseca, Nuno A. 1 Fu, Yi 1 Gao, Shan 1 Gestal, Marcos 1 Jovanović, Vesna B. 1 Kou, S. C. 1 Kung, Sunyuan 1 Lee, Jinwoo 1 Li, Tao 1 Li, Weijiang 1 Liang, Yunyun 1 Liao, Xiangru 1 Lu, Lingyi 1 Magalhães, Alexandre L. 1 Mahalingam, Rajasekaran 1 Mak, Man-Wai 1 Marashi, Sayed-Amir 1 Mei, Juan 1 Peng, Hung-Pin 1 Pezeshk, Hamid 1 Qian, Ziliang 1 Seoane, José A. 1 Shi, Tieliu 1 Song, Jiangning 1 Stojanović, Srđan Đ. 1 Tian, Na 1 Wan, Shibiao 1 Wang, Jie 1 Wang, Minglei 1 Wong, Samuel W. K. 1 Yang, An-Suei 1 Yao, Hui 1 Yu, Xiaojing 1 Zarić, Božidarka L. 1 Zhang, Lei 1 Zhang, Shengli 1 Zhao, Ji Cited in 5 Serials 19 Journal of Theoretical Biology 2 Computational Biology and Chemistry 1 The Annals of Applied Statistics 1 Journal of the Korean Society for Industrial and Applied Mathematics 1 Methods in Molecular Biology Cited in 5 Fields 23 Biology and other natural sciences (92-XX) 11 Statistics (62-XX) 5 Computer science (68-XX) 1 Combinatorics (05-XX) 1 Operations research, mathematical programming (90-XX) Citations by Year