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PISCES

swMATH ID: 16873
Software Authors: Guoli Wang, Roland L. Dunbrack Jr
Description: PISCES: a protein sequence culling server. Summary: PISCES is a public server for culling sets of protein sequences from the Protein Data Bank (PDB) by sequence identity and structural quality criteria. PISCES can provide lists culled from the entire PDB or from lists of PDB entries or chains provided by the user. The sequence identities are obtained from PSI-BLAST alignments with position-specific substitution matrices derived from the non-redundant protein sequence database. PISCES therefore provides better lists than servers that use BLAST, which is unable to identify many relationships below 40
Homepage: http://bioinformatics.oxfordjournals.org/content/19/12/1589.short
Related Software: LIBSVM; BLAST; PSI-BLAST; iLoc-Euk; Cell-PLoc; UniProt; AFP-Pred; Python; LIGPLOT; SMOTE; wxPython; WEKA; LIBLINEAR; R; PyMOL; Hum-PLoc; SVMlight; MIND-BEST; FUGUE; pLoc-mVirus
Cited in: 24 Publications

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