Galaxy swMATH ID: 16927 Software Authors: Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, Istvan Albert, James Taylor, Webb Miller, W. James Kent, Anton Nekrutenko Description: Galaxy: A platform for interactive large-scale genome analysis. Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search remote resources, combine data from independent queries, and visualize the results. The heart of Galaxy is a flexible history system that stores the queries from each user; performs operations such as intersections, unions, and subtractions; and links to other computational tools. Galaxy can be accessed at http://g2.bx.psu.edu. Homepage: https://galaxyproject.org/ Related Software: R; Bioconductor; TopHat; edgeR; STAR; BLAT; KEGG; BEDTools; Clustal X; MUSCLE; ClustalW; miRBase; DEseq; DAVID; BioMart; NGS QC Toolkit; FastQC; HTSeq; rmarkdown; Sweave Cited in: 7 Publications all top 5 Cited by 21 Authors 1 Baev, Vesselin 1 Bunnik, Evelien M. 1 Carugo, Oliviero 1 Daskalova, Evelina 1 Davis, Sean L. 1 Eisenhaber, Frank 1 Hasan, Md. Abid 1 Kanatchikov, Igor V. 1 Kong, Yan 1 Le Roch, Karine 1 Liu, Huaping 1 Lonardi, Stefano 1 Mathé, Ewy 1 Minkov, Ivan 1 Pan, Weihua 1 Picardi, Ernesto 1 Polishko, Anton 1 Song, Wei 1 Wang, Jiajia 1 Yin, Xia 1 Zang, Weidong Cited in 4 Serials 3 Methods in Molecular Biology 1 Reports on Mathematical Physics 1 Computational Biology and Chemistry 1 Journal of Theoretical Biology all top 5 Cited in 6 Fields 6 Biology and other natural sciences (92-XX) 2 Statistics (62-XX) 1 General and overarching topics; collections (00-XX) 1 Partial differential equations (35-XX) 1 Computer science (68-XX) 1 Quantum theory (81-XX) Citations by Year