swMATH ID: 16943
Software Authors: Liu T1, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS
Description: Cistrome: an integrative platform for transcriptional regulation studies. The increasing volume of ChIP-chip and ChIP-seq data being generated creates a challenge for standard, integrative and reproducible bioinformatics data analysis platforms. We developed a web-based application called Cistrome, based on the Galaxy open source framework. In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Cistrome is available at http://cistrome.org/ap/.
Homepage: http://cistrome.org/Cistrome/Cistrome_Project.html
Related Software: itsmr; FastQC; ODoSE; Nebula; ITSM2000; R
Cited in: 1 Document

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