SDPBS swMATH ID: 17208 Software Authors: Jiang, Yi; Xie, Yang; Ying, Jinyong; Xie, Dexuan; Yu, Zeyun Description: SDPBS web server for calculation of electrostatics of ionic solvated biomolecules. The Poisson-Boltzmann equation (PBE) is one important implicit solvent continuum model for calculating electrostatics of protein in ionic solvent. We recently developed a PBE solver library, called SDPBS, that incorporates the finite element, finite difference, solution decomposition, domain decomposition, and multigrid methods. To make SDPBS more accessible to the scientific community, we present an SDPBS web server in this paper that allows clients to visualize and manipulate the molecular structure of a biomolecule, and to calculate PBE solutions in a remote and user friendly fashion. The web server is available on the website url{https://lsextrnprod.uwm.edu/electrostatics/}. Homepage: https://lsextrnprod.uwm.edu/electrostatics/ Keywords: Poisson-Boltzmann equation; interactive visualization; finite element method; electrostatic potential; computer graphics Related Software: MIBPB; DelPhi Web Server; AFMPB; FEniCS; PDB2PQR; APBS; tabipb; SyFi; SMPBS; PBEQ-Solver; DOLFIN; Python; PETSc; AQUASOL; TABI; PAFMPB; DelPhi; TMSmesh; TetGen; VMD Cited in: 7 Documents Standard Articles 1 Publication describing the Software, including 1 Publication in zbMATH Year SDPBS web server for calculation of electrostatics of ionic solvated biomolecules. Zbl 1347.92025Jiang, Yi; Xie, Yang; Ying, Jinyong; Xie, Dexuan; Yu, Zeyun 2015 all top 5 Cited by 13 Authors 4 Xie, Dexuan 3 Ying, Jinyong 2 Jiang, Yi 1 Deng, Weishan 1 Li, Jiao 1 Lu, Benzhuo 1 Maday, Yvon 1 Quan, Chaoyu 1 Stamm, Benjamin 1 Xie, Yang 1 Xu, Jin 1 Yu, Zeyun 1 Zhao, Shan all top 5 Cited in 6 Serials 2 Journal of Computational Physics 1 Journal of Computational and Applied Mathematics 1 Applied Mathematical Modelling 1 SIAM Journal on Scientific Computing 1 International Journal of Numerical Analysis and Modeling 1 Molecular Based Mathematical Biology Cited in 5 Fields 5 Numerical analysis (65-XX) 5 Biology and other natural sciences (92-XX) 3 Optics, electromagnetic theory (78-XX) 2 Partial differential equations (35-XX) 1 Computer science (68-XX) Citations by Year