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VarSifter

swMATH ID: 17296
Software Authors: Teer JK, Green ED, Mullikin JC, Biesecker LG
Description: VarSifter: Visualizing and analyzing exome-scale sequence variation data on a desktop computer. Summary: VarSifter is a graphical software tool for desktop computers that allows investigators of varying computational skills to easily and quickly sort, filter, and sift through sequence variation data. A variety of filters and a custom query framework allow filtering based on any combination of sample and annotation information. By simplifying visualization and analyses of exome-scale sequence variation data, this program will help bring the power and promise of massively-parallel DNA sequencing to a broader group of researchers. Availability and Implementation: VarSifter is written in Java, and is freely available in source and binary versions, along with a User Guide, at http://research.nhgri.nih.gov/software/VarSifter/.
Homepage: https://github.com/teerjk/VarSifter
Source Code:  https://github.com/teerjk/VarSifter
Related Software: Galaxy; ROAST; featureCounts; Rsubread; recount; PROPER; GenomeGraphs; Rtracklayer; Gviz; GeneHug-GEPIS; VariantAnnotation; SSAHA; VariantTools; GSNAP; BEDOPS; Genoviz; Cutadapt; BEDTools; NGS-QC; pyDNase; DREME
Cited in: 1 Publication

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